Wall clock time and date at job start Tue Mar 31 2020 18:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50704 * 120.00462 * 2 1 4 4 N 1.46495 * 109.47277 * 235.00500 * 3 2 1 5 5 C 1.46498 * 119.99984 * 94.68667 * 4 3 2 6 6 C 1.50704 * 109.47207 * 89.99460 * 5 4 3 7 7 H 1.08002 * 119.99674 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99885 * 180.02562 * 6 5 4 9 9 N 1.31518 * 120.00408 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99941 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47316 * 89.99923 * 10 8 6 12 12 H 1.48498 * 109.47315 * 210.00119 * 10 8 6 13 13 H 1.48507 * 109.47036 * 330.00059 * 10 8 6 14 14 C 1.34776 * 120.00062 * 274.68323 * 4 3 2 15 15 O 1.21592 * 119.99913 * 185.26720 * 14 4 3 16 16 C 1.47518 * 119.99843 * 5.25953 * 14 4 3 17 17 C 1.36604 * 125.77105 * 185.66093 * 16 14 4 18 18 N 1.34811 * 106.83940 * 179.90264 * 17 16 14 19 19 C 1.46501 * 126.59291 * 180.15162 * 18 17 16 20 20 C 1.52995 * 109.47076 * 125.26831 * 19 18 17 21 21 H 1.08998 * 110.46633 * 303.81646 * 20 19 18 22 22 C 1.54094 * 110.52140 * 181.04039 * 20 19 18 23 23 N 1.47087 * 103.77985 * 241.36812 * 22 20 19 24 24 C 1.34007 * 108.88027 * 359.97438 * 23 22 20 25 25 O 1.21510 * 123.07104 * 180.02562 * 24 23 22 26 26 O 1.33779 * 113.85560 * 359.97438 * 24 23 22 27 27 N 1.40209 * 106.81126 * 0.35079 * 18 17 16 28 28 N 1.28753 * 108.36890 * 359.78027 * 27 18 17 29 29 H 1.07997 * 120.00133 * 179.97438 * 1 2 3 30 30 H 1.08001 * 119.99518 * 359.71717 * 1 2 3 31 31 H 1.08002 * 119.99770 * 180.02562 * 2 1 3 32 32 H 1.08999 * 109.46788 * 355.00701 * 3 2 1 33 33 H 1.09000 * 109.46927 * 115.00044 * 3 2 1 34 34 H 1.08992 * 109.47334 * 209.99817 * 5 4 3 35 35 H 1.09000 * 109.47213 * 330.00141 * 5 4 3 36 36 H 0.96996 * 120.00440 * 180.02562 * 9 8 6 37 37 H 1.08003 * 126.57721 * 0.03305 * 17 16 14 38 38 H 1.09001 * 109.46852 * 245.26753 * 19 18 17 39 39 H 1.09003 * 109.47097 * 5.26408 * 19 18 17 40 40 H 1.08998 * 110.56508 * 359.94436 * 22 20 19 41 41 H 1.09001 * 110.56534 * 122.79431 * 22 20 19 42 42 H 0.96998 * 125.56249 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3319 -1.1314 5 6 2.5935 1.9578 -2.3940 6 6 2.9717 3.4165 -2.3737 7 1 3.4616 3.8352 -1.5070 8 6 2.6923 4.2164 -3.4614 9 7 2.0952 3.7066 -4.5165 10 14 3.1617 6.0242 -3.4364 11 1 4.5329 6.1873 -3.9826 12 1 2.2030 6.7961 -4.2672 13 1 3.1223 6.5266 -2.0395 14 6 4.2178 0.7807 -1.0108 15 8 5.0239 0.8865 -1.9149 16 6 4.5794 0.0494 0.2182 17 6 5.8131 -0.4589 0.5112 18 7 5.7167 -1.0449 1.7214 19 6 6.7903 -1.7243 2.4508 20 6 6.9300 -1.1077 3.8440 21 1 7.1019 -0.0339 3.7700 22 6 8.0716 -1.7881 4.6239 23 7 7.3967 -2.3765 5.7908 24 6 6.0879 -2.0974 5.7211 25 8 5.2866 -2.4619 6.5587 26 8 5.7442 -1.3799 4.6456 27 7 4.3902 -0.8831 2.1458 28 7 3.7495 -0.2348 1.2365 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5399 0.9354 0.0046 31 1 1.8500 -0.9353 -0.0004 32 1 1.3587 2.1316 -0.0894 33 1 2.6214 1.4025 0.9314 34 1 3.1007 1.4625 -3.2219 35 1 1.5149 1.8640 -2.5203 36 1 1.8990 4.2692 -5.2819 37 1 6.6967 -0.4004 -0.1072 38 1 6.5519 -2.7838 2.5446 39 1 7.7281 -1.6097 1.9070 40 1 8.5382 -2.5656 4.0191 41 1 8.8110 -1.0522 4.9400 42 1 7.8285 -2.8837 6.4959 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001450192812.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:20 Heat of formation + Delta-G solvation = 38.990014 kcal Electronic energy + Delta-G solvation = -28557.462548 eV Core-core repulsion = 24349.159205 eV Total energy + Delta-G solvation = -4208.303344 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.34231 -41.86294 -38.72365 -37.79540 -35.64693 -35.30139 -34.98993 -33.09198 -31.93423 -31.38719 -30.53387 -27.71016 -26.74812 -25.40125 -23.80250 -23.69191 -22.85103 -21.92018 -21.82731 -19.84700 -19.05208 -18.77297 -17.66396 -17.26365 -16.89809 -16.45130 -16.06074 -15.90121 -15.63847 -15.18392 -14.95633 -14.62273 -14.50884 -14.33336 -14.11774 -14.06161 -13.69049 -13.27206 -13.01974 -12.79078 -12.67448 -12.15595 -11.90539 -11.62150 -11.41329 -11.22269 -11.10619 -10.97243 -10.83068 -10.66384 -10.55157 -10.34878 -10.14550 -9.99825 -9.58584 -9.18922 -9.11493 -8.84482 -8.38826 -7.63085 -5.99811 -4.04133 1.15719 1.77083 2.05285 2.20091 2.29421 2.77787 2.87911 3.31136 3.34538 3.39954 3.43054 3.52214 3.85039 3.90382 4.02604 4.22087 4.37413 4.39679 4.46395 4.48672 4.73545 4.87102 4.92704 5.12835 5.29889 5.34401 5.51631 5.71544 5.82907 6.07358 6.20904 6.25743 6.35800 6.52278 6.76233 7.08653 7.12185 7.25438 7.46861 7.60310 7.61782 7.95735 8.07389 8.27157 8.42917 8.90306 9.06696 9.60280 11.08310 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.017582 B = 0.002636 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.193131 B =10620.702719 C =11301.194504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.135 4.135 3 C 0.139 3.861 4 N -0.575 5.575 5 C 0.247 3.753 6 C -0.523 4.523 7 H 0.058 0.942 8 C 0.061 3.939 9 N -0.895 5.895 10 Si 0.898 3.102 11 H -0.280 1.280 12 H -0.286 1.286 13 H -0.274 1.274 14 C 0.586 3.414 15 O -0.539 6.539 16 C -0.083 4.083 17 C 0.080 3.920 18 N -0.376 5.376 19 C 0.119 3.881 20 C 0.055 3.945 21 H 0.126 0.874 22 C 0.075 3.925 23 N -0.739 5.739 24 C 0.641 3.359 25 O -0.517 6.517 26 O -0.297 6.297 27 N -0.051 5.051 28 N -0.198 5.198 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.102 0.898 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.044 0.956 35 H 0.037 0.963 36 H 0.263 0.737 37 H 0.204 0.796 38 H 0.107 0.893 39 H 0.130 0.870 40 H 0.099 0.901 41 H 0.103 0.897 42 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.150 -13.477 17.450 26.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.154 4.154 3 C 0.015 3.985 4 N -0.304 5.304 5 C 0.129 3.871 6 C -0.562 4.562 7 H 0.076 0.924 8 C -0.141 4.141 9 N -0.534 5.534 10 Si 0.726 3.274 11 H -0.206 1.206 12 H -0.212 1.212 13 H -0.199 1.199 14 C 0.370 3.630 15 O -0.416 6.416 16 C -0.221 4.221 17 C -0.074 4.074 18 N -0.162 5.162 19 C -0.003 4.003 20 C -0.002 4.002 21 H 0.144 0.856 22 C -0.051 4.051 23 N -0.414 5.414 24 C 0.393 3.607 25 O -0.400 6.400 26 O -0.206 6.206 27 N -0.031 5.031 28 N -0.072 5.072 29 H 0.108 0.892 30 H 0.114 0.886 31 H 0.120 0.880 32 H 0.101 0.899 33 H 0.107 0.893 34 H 0.062 0.938 35 H 0.055 0.945 36 H 0.072 0.928 37 H 0.220 0.780 38 H 0.125 0.875 39 H 0.148 0.852 40 H 0.117 0.883 41 H 0.121 0.879 42 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges 13.746 -13.635 18.101 26.505 hybrid contribution 1.441 0.826 -0.478 1.728 sum 15.187 -12.809 17.623 26.557 Atomic orbital electron populations 1.23714 0.95859 1.01309 1.03072 1.23248 0.95684 0.99036 0.97482 1.20741 0.92794 0.95070 0.89902 1.48080 1.12397 1.54313 1.15586 1.19359 0.95963 0.92542 0.79270 1.21425 1.38964 0.93927 1.01917 0.92360 1.24923 0.95112 0.98830 0.95221 1.69935 1.41784 1.36133 1.05560 0.86502 0.78297 0.84675 0.77959 1.20610 1.21197 1.19920 1.16795 0.83008 0.79183 0.84013 1.90779 1.49196 1.61283 1.40302 1.21977 0.91301 1.09936 0.98862 1.23348 1.01182 0.95312 0.87598 1.50261 1.11160 1.40548 1.14258 1.22281 0.89456 0.97924 0.90644 1.24161 0.82909 1.02805 0.90364 0.85587 1.22742 0.95132 0.99425 0.87778 1.45996 1.07877 1.59671 1.27830 1.18697 0.82798 0.77550 0.81617 1.91108 1.53613 1.55899 1.39396 1.87596 1.32053 1.67016 1.33927 1.82230 0.84661 1.17919 1.18275 1.74989 1.25360 1.07480 0.99379 0.89170 0.88609 0.87986 0.89876 0.89308 0.93834 0.94535 0.92753 0.77958 0.87510 0.85182 0.88271 0.87914 0.71977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.16 14.32 29.01 0.42 -2.74 16 2 C -0.14 -2.34 8.67 -36.02 -0.31 -2.66 16 3 C 0.14 2.64 5.43 -5.19 -0.03 2.61 16 4 N -0.57 -12.87 2.45 -177.68 -0.44 -13.31 16 5 C 0.25 6.57 5.10 -5.19 -0.03 6.55 16 6 C -0.52 -14.93 9.39 -34.44 -0.32 -15.26 16 7 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 8 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 9 N -0.89 -26.65 13.29 55.43 0.74 -25.91 16 10 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 14 C 0.59 12.54 7.62 -12.48 -0.10 12.45 16 15 O -0.54 -13.09 16.50 5.28 0.09 -13.00 16 16 C -0.08 -1.38 6.59 -83.55 -0.55 -1.93 16 17 C 0.08 0.94 11.28 -16.83 -0.19 0.75 16 18 N -0.38 -3.80 3.69 -61.06 -0.23 -4.03 16 19 C 0.12 0.50 6.11 -4.04 -0.02 0.47 16 20 C 0.06 0.25 4.07 -26.16 -0.11 0.14 16 21 H 0.13 0.48 8.14 -51.93 -0.42 0.06 16 22 C 0.08 0.07 7.71 -3.15 -0.02 0.05 16 23 N -0.74 -3.28 6.40 -64.73 -0.41 -3.69 16 24 C 0.64 6.50 9.16 53.71 0.49 6.99 16 25 O -0.52 -7.73 18.04 -19.12 -0.34 -8.07 16 26 O -0.30 -3.05 10.04 -37.85 -0.38 -3.43 16 27 N -0.05 -0.75 12.95 60.35 0.78 0.03 16 28 N -0.20 -3.27 7.34 32.85 0.24 -3.03 16 29 H 0.09 1.25 8.06 -52.49 -0.42 0.83 16 30 H 0.10 1.45 7.84 -52.49 -0.41 1.04 16 31 H 0.10 1.80 7.20 -52.49 -0.38 1.42 16 32 H 0.08 1.60 7.69 -51.93 -0.40 1.20 16 33 H 0.09 1.64 5.84 -51.93 -0.30 1.33 16 34 H 0.04 1.28 7.50 -51.93 -0.39 0.89 16 35 H 0.04 0.99 8.07 -51.93 -0.42 0.57 16 36 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.20 1.71 8.06 -52.48 -0.42 1.29 16 38 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.13 -0.05 8.08 -51.93 -0.42 -0.47 16 40 H 0.10 -0.18 7.73 -51.93 -0.40 -0.58 16 41 H 0.10 -0.11 8.14 -51.93 -0.42 -0.53 16 42 H 0.44 1.05 8.96 -40.82 -0.37 0.68 16 LS Contribution 368.03 15.07 5.55 5.55 Total: -1.00 -40.50 368.03 -5.45 -45.94 By element: Atomic # 1 Polarization: 2.13 SS G_CDS: -5.15 Total: -3.01 kcal Atomic # 6 Polarization: 9.95 SS G_CDS: -0.87 Total: 9.08 kcal Atomic # 7 Polarization: -50.62 SS G_CDS: 0.68 Total: -49.94 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.64 Total: -24.50 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -40.50 -5.45 -45.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001450192812.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.933 kcal (2) G-P(sol) polarization free energy of solvation -40.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds