Wall clock time and date at job start Tue Mar 31 2020 18:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46624 * 2 1 4 4 C 1.50702 * 109.46918 * 240.00522 * 2 1 3 5 5 H 1.08002 * 119.99446 * 239.99482 * 4 2 1 6 6 C 1.37871 * 120.00072 * 60.00109 * 4 2 1 7 7 N 1.31516 * 119.99826 * 179.72119 * 6 4 2 8 8 Si 1.86800 * 120.00406 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46758 * 269.72576 * 8 6 4 10 10 H 1.48499 * 109.47026 * 29.72423 * 8 6 4 11 11 H 1.48496 * 109.47474 * 149.72459 * 8 6 4 12 12 N 1.46495 * 109.47194 * 120.00052 * 2 1 3 13 13 C 1.34776 * 120.00388 * 275.00617 * 12 2 1 14 14 O 1.21281 * 119.99842 * 359.97438 * 13 12 2 15 15 C 1.50698 * 120.00287 * 180.02562 * 13 12 2 16 16 N 1.46503 * 109.47241 * 179.97438 * 15 13 12 17 17 C 1.34928 * 119.50071 * 89.99916 * 16 15 13 18 18 O 1.21799 * 120.39219 * 0.02562 * 17 16 15 19 19 C 1.41155 * 119.22228 * 179.97438 * 17 16 15 20 20 C 1.38922 * 119.15723 * 0.02562 * 19 17 16 21 21 N 1.33551 * 107.24283 * 179.97438 * 20 19 17 22 22 C 1.30868 * 109.80279 * 0.02562 * 21 20 19 23 23 N 1.34734 * 109.71184 * 359.97438 * 22 21 20 24 24 C 1.46506 * 126.50270 * 179.97438 * 23 22 21 25 25 N 1.38546 * 118.86097 * 359.97438 * 20 19 17 26 26 C 1.46496 * 119.95214 * 179.97438 * 25 20 19 27 27 C 1.34411 * 119.50263 * 269.72586 * 16 15 13 28 28 O 1.21603 * 119.16970 * 359.97438 * 27 16 15 29 29 H 1.09001 * 109.46592 * 179.97438 * 1 2 3 30 30 H 1.08990 * 109.47127 * 299.99571 * 1 2 3 31 31 H 1.08994 * 109.46846 * 59.99893 * 1 2 3 32 32 H 0.96999 * 120.00128 * 180.27192 * 7 6 4 33 33 H 0.97008 * 120.00075 * 94.99858 * 12 2 1 34 34 H 1.09000 * 109.47224 * 299.99957 * 15 13 12 35 35 H 1.09007 * 109.47091 * 59.99436 * 15 13 12 36 36 H 1.08003 * 125.14378 * 180.02562 * 22 21 20 37 37 H 1.09004 * 109.47074 * 270.04753 * 24 23 22 38 38 H 1.08997 * 109.47203 * 30.04259 * 24 23 22 39 39 H 1.08994 * 109.46774 * 150.04444 * 24 23 22 40 40 H 1.09005 * 109.47228 * 89.99708 * 26 25 20 41 41 H 1.08998 * 109.47640 * 209.99620 * 26 25 20 42 42 H 1.09003 * 109.46916 * 329.99820 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4827 7 7 2.1422 -0.8559 -3.5566 8 14 0.6248 1.2792 -2.6541 9 1 -0.8024 0.8723 -2.7065 10 1 0.8421 2.1735 -1.4886 11 1 0.9805 1.9990 -3.9033 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0184 2.3571 14 8 1.8590 1.1585 2.4116 15 6 2.6500 -0.7286 3.5874 16 7 2.6996 0.2128 4.7089 17 6 1.6193 0.3560 5.5044 18 8 0.6092 -0.2915 5.2945 19 6 1.6737 1.2643 6.5836 20 6 2.8388 1.9893 6.7999 21 7 2.6302 2.7648 7.8670 22 6 1.4202 2.5709 8.3262 23 7 0.7881 1.6535 7.5684 24 6 -0.5793 1.1616 7.7548 25 7 3.9140 1.7972 5.9475 26 6 5.1541 2.5496 6.1532 27 6 3.8225 0.9167 4.9330 28 8 4.7784 0.7574 4.1984 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8899 31 1 -0.3633 0.5138 -0.8899 32 1 1.9111 -0.5221 -4.4375 33 1 2.2491 -1.6318 1.1526 34 1 1.9778 -1.5510 3.8324 35 1 3.6494 -1.1204 3.3978 36 1 0.9926 3.0712 9.1825 37 1 -0.5663 0.2927 8.4128 38 1 -1.1900 1.9463 8.2013 39 1 -0.9988 0.8799 6.7891 40 1 5.8133 1.9892 6.8163 41 1 5.6489 2.7038 5.1944 42 1 4.9227 3.5155 6.6022 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064345976.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:17 Heat of formation + Delta-G solvation = 7.381768 kcal Electronic energy + Delta-G solvation = -29664.683532 eV Core-core repulsion = 25455.009552 eV Total energy + Delta-G solvation = -4209.673980 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.28543 -41.38047 -39.32646 -38.72477 -36.55821 -35.46815 -34.80896 -34.13208 -32.42403 -31.19735 -30.07424 -28.09057 -27.61008 -26.93988 -25.16496 -24.20218 -23.51810 -21.58801 -21.30186 -19.73075 -19.71057 -18.65827 -17.89501 -17.42662 -16.94648 -16.36750 -16.11017 -15.89692 -15.65542 -15.62512 -15.20114 -14.76790 -14.70759 -14.46723 -14.04136 -13.95020 -13.65798 -13.25475 -13.14910 -12.97542 -12.96682 -12.52465 -12.17676 -12.15596 -11.75530 -11.28686 -11.20334 -11.02020 -10.80211 -10.72707 -10.38402 -10.31166 -10.16959 -10.00927 -9.66988 -9.21377 -9.06215 -8.74143 -8.38360 -8.17553 -6.18720 -4.21046 0.64518 1.43323 1.88258 2.21780 2.29657 2.65593 3.14994 3.25354 3.28140 3.37142 3.42473 3.72336 3.95213 4.16201 4.19732 4.33964 4.37572 4.73174 4.91956 5.05400 5.09567 5.11372 5.16471 5.19339 5.24685 5.28352 5.41187 5.49387 5.53482 5.79711 6.20199 6.33214 6.39623 6.47983 6.58017 6.87222 7.01377 7.19087 7.24210 7.28195 7.34280 7.52929 7.79665 8.13454 8.51199 8.76306 8.88559 9.41985 10.93455 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.018061 B = 0.003229 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.952450 B = 8668.736491 C = 9312.661426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.238 3.762 3 H 0.048 0.952 4 C -0.534 4.534 5 H 0.082 0.918 6 C 0.079 3.921 7 N -0.892 5.892 8 Si 0.885 3.115 9 H -0.276 1.276 10 H -0.263 1.263 11 H -0.294 1.294 12 N -0.694 5.694 13 C 0.497 3.503 14 O -0.548 6.548 15 C 0.093 3.907 16 N -0.529 5.529 17 C 0.601 3.399 18 O -0.512 6.512 19 C -0.148 4.148 20 C 0.318 3.682 21 N -0.501 5.501 22 C 0.260 3.740 23 N -0.413 5.413 24 C 0.070 3.930 25 N -0.511 5.511 26 C 0.092 3.908 27 C 0.714 3.286 28 O -0.527 6.527 29 H 0.054 0.946 30 H 0.035 0.965 31 H 0.047 0.953 32 H 0.267 0.733 33 H 0.397 0.603 34 H 0.128 0.872 35 H 0.131 0.869 36 H 0.229 0.771 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.071 0.929 41 H 0.093 0.907 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.600 3.925 28.183 28.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.135 3.865 3 H 0.066 0.934 4 C -0.572 4.572 5 H 0.100 0.900 6 C -0.125 4.125 7 N -0.529 5.529 8 Si 0.715 3.285 9 H -0.203 1.203 10 H -0.188 1.188 11 H -0.221 1.221 12 N -0.343 5.343 13 C 0.280 3.720 14 O -0.426 6.426 15 C -0.032 4.032 16 N -0.272 5.272 17 C 0.395 3.605 18 O -0.387 6.387 19 C -0.265 4.265 20 C 0.087 3.913 21 N -0.225 5.225 22 C -0.023 4.023 23 N -0.094 5.094 24 C -0.072 4.072 25 N -0.239 5.239 26 C -0.050 4.050 27 C 0.416 3.584 28 O -0.398 6.398 29 H 0.073 0.927 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.231 0.769 34 H 0.146 0.854 35 H 0.148 0.852 36 H 0.245 0.755 37 H 0.104 0.896 38 H 0.114 0.886 39 H 0.120 0.880 40 H 0.089 0.911 41 H 0.112 0.888 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.353 4.756 27.717 28.155 hybrid contribution -1.184 -0.087 -0.504 1.290 sum -2.537 4.669 27.214 27.728 Atomic orbital electron populations 1.22440 0.99228 1.00929 0.99243 1.19122 0.90146 0.94684 0.82570 0.93392 1.21035 1.33211 1.14497 0.88449 0.90020 1.24815 0.95505 0.96649 0.95517 1.69866 1.44860 1.40158 0.98023 0.86883 0.80530 0.83680 0.77435 1.20301 1.18758 1.22113 1.46061 1.64949 1.13895 1.09402 1.20436 0.78856 0.87804 0.84891 1.90670 1.51123 1.15889 1.84955 1.21657 1.06330 0.91376 0.83788 1.45328 1.12651 1.40287 1.28963 1.15343 0.82911 0.81595 0.80640 1.90871 1.29122 1.46504 1.72208 1.18771 0.93814 1.11880 1.02017 1.18094 0.86516 0.94683 0.92023 1.69636 1.16661 1.25336 1.10866 1.25259 0.87624 0.91739 0.97686 1.44655 1.12974 1.30889 1.20895 1.22326 0.77956 1.01170 1.05720 1.43824 1.13891 1.40037 1.26155 1.21947 0.82946 0.95980 1.04088 1.15364 0.83370 0.79004 0.80624 1.91049 1.35974 1.66858 1.45927 0.92688 0.94621 0.93474 0.92286 0.76902 0.85437 0.85165 0.75492 0.89553 0.88561 0.88001 0.91053 0.88803 0.89172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.73 8.96 37.16 0.33 -3.40 16 2 C 0.24 5.89 2.15 -69.08 -0.15 5.74 16 3 H 0.05 1.32 6.63 -51.93 -0.34 0.98 16 4 C -0.53 -14.74 9.31 -34.44 -0.32 -15.06 16 5 H 0.08 2.35 7.98 -52.49 -0.42 1.93 16 6 C 0.08 2.25 5.45 -17.82 -0.10 2.15 16 7 N -0.89 -26.80 13.96 55.43 0.77 -26.02 16 8 Si 0.88 22.32 24.37 -169.99 -4.14 18.17 16 9 H -0.28 -6.72 6.88 56.52 0.39 -6.33 16 10 H -0.26 -6.66 6.52 56.52 0.37 -6.29 16 11 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 12 N -0.69 -14.32 5.07 -54.93 -0.28 -14.60 16 13 C 0.50 10.06 7.86 -10.99 -0.09 9.98 16 14 O -0.55 -13.27 16.09 5.56 0.09 -13.18 16 15 C 0.09 1.44 5.55 -5.19 -0.03 1.41 16 16 N -0.53 -8.53 2.05 -125.45 -0.26 -8.79 16 17 C 0.60 9.44 7.43 -15.08 -0.11 9.33 16 18 O -0.51 -8.65 15.56 5.10 0.08 -8.57 16 19 C -0.15 -1.96 6.90 -83.71 -0.58 -2.53 16 20 C 0.32 4.10 7.63 -154.55 -1.18 2.92 16 21 N -0.50 -5.27 11.16 -13.38 -0.15 -5.42 16 22 C 0.26 1.82 12.50 -90.35 -1.13 0.70 16 23 N -0.41 -3.70 3.18 -123.14 -0.39 -4.09 16 24 C 0.07 0.38 10.97 59.85 0.66 1.04 16 25 N -0.51 -6.94 3.06 -128.31 -0.39 -7.33 16 26 C 0.09 0.93 10.39 59.84 0.62 1.55 16 27 C 0.71 11.50 8.11 -87.36 -0.71 10.79 16 28 O -0.53 -9.45 15.26 5.27 0.08 -9.37 16 29 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.05 1.12 3.28 -51.93 -0.17 0.95 16 32 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 33 H 0.40 6.98 8.54 -40.82 -0.35 6.63 16 34 H 0.13 1.65 7.40 -51.93 -0.38 1.26 16 35 H 0.13 1.75 7.33 -51.93 -0.38 1.37 16 36 H 0.23 0.31 8.06 -52.48 -0.42 -0.11 16 37 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.10 0.19 8.14 -51.93 -0.42 -0.24 16 39 H 0.10 0.82 7.27 -51.93 -0.38 0.45 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.09 1.00 7.39 -51.93 -0.38 0.62 16 42 H 0.09 0.78 8.01 -51.93 -0.42 0.37 16 LS Contribution 354.37 15.07 5.34 5.34 Total: -1.00 -39.18 354.37 -6.97 -46.14 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -4.94 Total: 3.08 kcal Atomic # 6 Polarization: 27.41 SS G_CDS: -2.78 Total: 24.63 kcal Atomic # 7 Polarization: -65.57 SS G_CDS: -0.69 Total: -66.26 kcal Atomic # 8 Polarization: -31.36 SS G_CDS: 0.25 Total: -31.11 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.14 Total: 18.17 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -39.18 -6.97 -46.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064345976.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.525 kcal (2) G-P(sol) polarization free energy of solvation -39.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds