Wall clock time and date at job start Tue Mar 31 2020 18:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46624 * 2 1 4 4 C 1.50702 * 109.46918 * 240.00522 * 2 1 3 5 5 H 1.08002 * 119.99446 * 239.99482 * 4 2 1 6 6 C 1.37871 * 120.00072 * 60.00109 * 4 2 1 7 7 N 1.31516 * 119.99826 * 179.72119 * 6 4 2 8 8 Si 1.86800 * 120.00406 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46758 * 269.72576 * 8 6 4 10 10 H 1.48499 * 109.47026 * 29.72423 * 8 6 4 11 11 H 1.48496 * 109.47474 * 149.72459 * 8 6 4 12 12 N 1.46495 * 109.47194 * 120.00052 * 2 1 3 13 13 C 1.34776 * 120.00388 * 275.00617 * 12 2 1 14 14 O 1.21281 * 119.99842 * 359.97438 * 13 12 2 15 15 C 1.50698 * 120.00287 * 180.02562 * 13 12 2 16 16 N 1.46503 * 109.47241 * 179.97438 * 15 13 12 17 17 C 1.34928 * 119.50071 * 89.99916 * 16 15 13 18 18 O 1.21799 * 120.39219 * 0.02562 * 17 16 15 19 19 C 1.41155 * 119.22228 * 179.97438 * 17 16 15 20 20 C 1.38922 * 119.15723 * 0.02562 * 19 17 16 21 21 N 1.33551 * 107.24283 * 179.97438 * 20 19 17 22 22 C 1.30868 * 109.80279 * 0.02562 * 21 20 19 23 23 N 1.34734 * 109.71184 * 359.97438 * 22 21 20 24 24 C 1.46506 * 126.50270 * 179.97438 * 23 22 21 25 25 N 1.38546 * 118.86097 * 359.97438 * 20 19 17 26 26 C 1.46496 * 119.95214 * 179.97438 * 25 20 19 27 27 C 1.34411 * 119.50263 * 269.72586 * 16 15 13 28 28 O 1.21603 * 119.16970 * 359.97438 * 27 16 15 29 29 H 1.09001 * 109.46592 * 179.97438 * 1 2 3 30 30 H 1.08990 * 109.47127 * 299.99571 * 1 2 3 31 31 H 1.08994 * 109.46846 * 59.99893 * 1 2 3 32 32 H 0.96999 * 120.00128 * 180.27192 * 7 6 4 33 33 H 0.97008 * 120.00075 * 94.99858 * 12 2 1 34 34 H 1.09000 * 109.47224 * 299.99957 * 15 13 12 35 35 H 1.09007 * 109.47091 * 59.99436 * 15 13 12 36 36 H 1.08003 * 125.14378 * 180.02562 * 22 21 20 37 37 H 1.09004 * 109.47074 * 270.04753 * 24 23 22 38 38 H 1.08997 * 109.47203 * 30.04259 * 24 23 22 39 39 H 1.08994 * 109.46774 * 150.04444 * 24 23 22 40 40 H 1.09005 * 109.47228 * 89.99708 * 26 25 20 41 41 H 1.08998 * 109.47640 * 209.99620 * 26 25 20 42 42 H 1.09003 * 109.46916 * 329.99820 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4827 7 7 2.1422 -0.8559 -3.5566 8 14 0.6248 1.2792 -2.6541 9 1 -0.8024 0.8723 -2.7065 10 1 0.8421 2.1735 -1.4886 11 1 0.9805 1.9990 -3.9033 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0184 2.3571 14 8 1.8590 1.1585 2.4116 15 6 2.6500 -0.7286 3.5874 16 7 2.6996 0.2128 4.7089 17 6 1.6193 0.3560 5.5044 18 8 0.6092 -0.2915 5.2945 19 6 1.6737 1.2643 6.5836 20 6 2.8388 1.9893 6.7999 21 7 2.6302 2.7648 7.8670 22 6 1.4202 2.5709 8.3262 23 7 0.7881 1.6535 7.5684 24 6 -0.5793 1.1616 7.7548 25 7 3.9140 1.7972 5.9475 26 6 5.1541 2.5496 6.1532 27 6 3.8225 0.9167 4.9330 28 8 4.7784 0.7574 4.1984 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8899 31 1 -0.3633 0.5138 -0.8899 32 1 1.9111 -0.5221 -4.4375 33 1 2.2491 -1.6318 1.1526 34 1 1.9778 -1.5510 3.8324 35 1 3.6494 -1.1204 3.3978 36 1 0.9926 3.0712 9.1825 37 1 -0.5663 0.2927 8.4128 38 1 -1.1900 1.9463 8.2013 39 1 -0.9988 0.8799 6.7891 40 1 5.8133 1.9892 6.8163 41 1 5.6489 2.7038 5.1944 42 1 4.9227 3.5155 6.6022 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064345976.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:16 Heat of formation + Delta-G solvation = -21.403800 kcal Electronic energy + Delta-G solvation = -29665.931768 eV Core-core repulsion = 25455.009552 eV Total energy + Delta-G solvation = -4210.922216 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.19396 -42.40925 -40.70985 -40.14235 -37.61472 -37.04281 -36.34903 -34.85010 -34.48130 -32.53498 -31.56400 -29.28160 -28.24176 -27.87682 -27.25722 -25.25375 -24.57978 -23.16996 -22.29561 -21.48465 -20.64715 -19.74149 -19.35496 -18.58807 -18.38256 -17.64812 -17.51535 -17.03905 -16.90214 -16.67164 -16.61315 -16.09351 -16.01260 -15.61538 -15.38548 -15.04967 -14.91662 -14.75381 -14.46740 -14.18225 -13.85654 -13.80969 -13.67979 -13.48463 -13.31899 -13.05750 -12.83900 -12.41880 -12.19137 -11.84367 -11.79879 -11.75399 -11.59820 -11.33766 -11.31199 -10.91254 -10.85945 -10.59049 -10.00461 -9.29608 -8.40808 -6.46734 -0.25027 0.42816 0.73878 1.23611 1.32177 1.41634 1.45903 1.54261 1.56107 1.67471 2.11656 2.23248 2.46262 2.90608 2.94904 3.31726 3.65774 3.67079 3.82344 3.96063 4.07083 4.09370 4.17212 4.39254 4.39675 4.44587 4.48863 4.50824 4.64442 4.67794 4.74641 4.78203 4.92312 4.93169 5.21296 5.25885 5.36603 5.54183 5.85354 5.98136 6.08673 6.20724 6.40935 6.53800 6.66316 6.74537 7.13070 7.29912 8.74408 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.018061 B = 0.003229 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.952450 B = 8668.736491 C = 9312.661426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.243 3.757 3 H 0.018 0.982 4 C -0.534 4.534 5 H 0.062 0.938 6 C 0.032 3.968 7 N -0.931 5.931 8 Si 0.937 3.063 9 H -0.257 1.257 10 H -0.269 1.269 11 H -0.289 1.289 12 N -0.691 5.691 13 C 0.495 3.505 14 O -0.590 6.590 15 C 0.101 3.899 16 N -0.537 5.537 17 C 0.593 3.407 18 O -0.536 6.536 19 C -0.182 4.182 20 C 0.312 3.688 21 N -0.519 5.519 22 C 0.294 3.706 23 N -0.414 5.414 24 C 0.066 3.934 25 N -0.511 5.511 26 C 0.088 3.912 27 C 0.707 3.293 28 O -0.556 6.556 29 H 0.069 0.931 30 H 0.039 0.961 31 H 0.042 0.958 32 H 0.271 0.729 33 H 0.412 0.588 34 H 0.155 0.845 35 H 0.150 0.850 36 H 0.290 0.710 37 H 0.102 0.898 38 H 0.140 0.860 39 H 0.070 0.930 40 H 0.091 0.909 41 H 0.083 0.917 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.975 4.974 31.343 31.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.139 3.861 3 H 0.036 0.964 4 C -0.572 4.572 5 H 0.080 0.920 6 C -0.168 4.168 7 N -0.569 5.569 8 Si 0.764 3.236 9 H -0.182 1.182 10 H -0.194 1.194 11 H -0.216 1.216 12 N -0.341 5.341 13 C 0.280 3.720 14 O -0.471 6.471 15 C -0.023 4.023 16 N -0.279 5.279 17 C 0.390 3.610 18 O -0.414 6.414 19 C -0.299 4.299 20 C 0.080 3.920 21 N -0.244 5.244 22 C 0.012 3.988 23 N -0.095 5.095 24 C -0.074 4.074 25 N -0.238 5.238 26 C -0.052 4.052 27 C 0.410 3.590 28 O -0.431 6.431 29 H 0.088 0.912 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.249 0.751 34 H 0.172 0.828 35 H 0.168 0.832 36 H 0.305 0.695 37 H 0.120 0.880 38 H 0.159 0.841 39 H 0.089 0.911 40 H 0.109 0.891 41 H 0.102 0.898 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.743 5.782 30.925 31.580 hybrid contribution -0.727 -0.374 -1.339 1.569 sum -3.470 5.408 29.586 30.276 Atomic orbital electron populations 1.22321 0.97683 1.01888 0.99181 1.18779 0.91263 0.93025 0.83073 0.96410 1.21226 1.32479 1.13782 0.89693 0.92031 1.25512 0.96805 0.99190 0.95341 1.69963 1.46462 1.41864 0.98643 0.86036 0.80007 0.80421 0.77094 1.18239 1.19406 1.21644 1.45876 1.64982 1.14576 1.08668 1.21206 0.77642 0.87382 0.85754 1.90640 1.52840 1.17907 1.85735 1.21669 1.07736 0.91271 0.81662 1.45450 1.13043 1.40435 1.28958 1.15728 0.82361 0.81848 0.81113 1.90840 1.29680 1.47765 1.73107 1.18729 0.95485 1.12577 1.03129 1.18319 0.86050 0.95134 0.92526 1.69710 1.18670 1.25598 1.10403 1.26549 0.86053 0.89144 0.97101 1.44972 1.13635 1.30939 1.19908 1.22580 0.76599 1.03527 1.04667 1.43936 1.15083 1.39247 1.25564 1.22154 0.82168 0.96753 1.04103 1.15542 0.83061 0.79380 0.81061 1.91014 1.36822 1.68029 1.47204 0.91194 0.94171 0.93955 0.91934 0.75127 0.82761 0.83208 0.69542 0.87979 0.84137 0.91063 0.89075 0.89834 0.87562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.99 8.96 71.99 0.64 -6.35 16 2 C 0.24 12.15 2.15 44.25 0.10 12.25 16 3 H 0.02 1.01 6.63 -2.39 -0.02 1.00 16 4 C -0.53 -29.89 9.31 25.60 0.24 -29.66 16 5 H 0.06 3.62 7.98 -2.91 -0.02 3.60 16 6 C 0.03 1.82 5.45 84.65 0.46 2.29 16 7 N -0.93 -56.58 13.96 21.45 0.30 -56.28 16 8 Si 0.94 46.05 24.37 68.60 1.67 47.72 16 9 H -0.26 -11.77 6.88 99.48 0.68 -11.08 16 10 H -0.27 -13.41 6.52 99.48 0.65 -12.76 16 11 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 12 N -0.69 -28.70 5.07 -446.09 -2.26 -30.96 16 13 C 0.49 20.25 7.86 87.66 0.69 20.94 16 14 O -0.59 -29.23 16.09 -3.03 -0.05 -29.27 16 15 C 0.10 3.11 5.55 85.63 0.47 3.59 16 16 N -0.54 -17.45 2.05 -787.37 -1.61 -19.06 16 17 C 0.59 18.69 7.43 84.93 0.63 19.32 16 18 O -0.54 -18.25 15.56 -4.66 -0.07 -18.32 16 19 C -0.18 -4.66 6.90 39.04 0.27 -4.39 16 20 C 0.31 7.65 7.63 132.82 1.01 8.67 16 21 N -0.52 -9.43 11.16 -196.26 -2.19 -11.62 16 22 C 0.29 2.85 12.50 180.25 2.25 5.10 16 23 N -0.41 -6.27 3.18 -543.49 -1.73 -8.00 16 24 C 0.07 0.54 10.97 127.77 1.40 1.94 16 25 N -0.51 -13.73 3.06 -678.20 -2.07 -15.80 16 26 C 0.09 1.73 10.39 127.77 1.33 3.06 16 27 C 0.71 23.10 8.11 179.21 1.45 24.56 16 28 O -0.56 -20.44 15.26 -4.04 -0.06 -20.50 16 29 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 30 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.04 1.96 3.28 -2.39 -0.01 1.96 16 32 H 0.27 15.45 8.31 -92.71 -0.77 14.67 16 33 H 0.41 14.47 8.54 -92.70 -0.79 13.67 16 34 H 0.15 3.87 7.40 -2.39 -0.02 3.85 16 35 H 0.15 3.99 7.33 -2.38 -0.02 3.97 16 36 H 0.29 -1.18 8.06 -2.91 -0.02 -1.21 16 37 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.14 -0.13 8.14 -2.39 -0.02 -0.15 16 39 H 0.07 1.08 7.27 -2.39 -0.02 1.07 16 40 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 41 H 0.08 1.81 7.39 -2.39 -0.02 1.79 16 42 H 0.11 1.71 8.01 -2.39 -0.02 1.69 16 Total: -1.00 -88.45 354.37 3.10 -85.36 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 0.22 Total: 15.42 kcal Atomic # 6 Polarization: 50.36 SS G_CDS: 10.95 Total: 61.32 kcal Atomic # 7 Polarization: -132.16 SS G_CDS: -9.56 Total: -141.72 kcal Atomic # 8 Polarization: -67.91 SS G_CDS: -0.18 Total: -68.09 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 1.67 Total: 47.72 kcal Total: -88.45 3.10 -85.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064345976.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.952 kcal (2) G-P(sol) polarization free energy of solvation -88.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds