Wall clock time and date at job start Tue Mar 31 2020 18:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42899 * 113.99734 * 2 1 4 4 C 1.53000 * 109.46967 * 180.02562 * 3 2 1 5 5 N 1.46902 * 109.47246 * 67.67016 * 4 3 2 6 6 C 1.46900 * 111.00240 * 286.02209 * 5 4 3 7 7 C 1.50694 * 109.47028 * 172.04810 * 6 5 4 8 8 H 1.07993 * 120.00440 * 356.99923 * 7 6 5 9 9 C 1.37885 * 119.99756 * 176.99866 * 7 6 5 10 10 N 1.31518 * 119.99698 * 180.02562 * 9 7 6 11 11 Si 1.86797 * 119.99930 * 359.97438 * 9 7 6 12 12 H 1.48506 * 109.46910 * 90.00539 * 11 9 7 13 13 H 1.48501 * 109.47187 * 210.00085 * 11 9 7 14 14 H 1.48494 * 109.47198 * 330.00335 * 11 9 7 15 15 C 1.46903 * 110.99735 * 162.06705 * 5 4 3 16 16 C 1.50691 * 109.47297 * 293.95304 * 15 5 4 17 17 N 1.30393 * 126.18341 * 89.98009 * 16 15 5 18 18 N 1.28663 * 109.52355 * 179.97438 * 17 16 15 19 19 C 1.31238 * 109.25085 * 0.02562 * 18 17 16 20 20 C 1.47855 * 126.37975 * 180.02562 * 19 18 17 21 21 C 1.39579 * 120.12553 * 180.02562 * 20 19 18 22 22 C 1.37957 * 119.90051 * 179.97438 * 21 20 19 23 23 C 1.38336 * 120.17481 * 0.02562 * 22 21 20 24 24 C 1.38558 * 120.25968 * 359.73508 * 23 22 21 25 25 F 1.35098 * 119.95265 * 180.26478 * 24 23 22 26 26 C 1.38209 * 120.09079 * 0.51556 * 24 23 22 27 27 O 1.34410 * 126.19343 * 270.28563 * 16 15 5 28 28 H 1.08998 * 109.46710 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47087 * 300.00315 * 1 2 3 30 30 H 1.08998 * 109.46621 * 59.99741 * 1 2 3 31 31 H 1.08996 * 109.47531 * 60.00129 * 3 2 1 32 32 H 1.09003 * 109.46866 * 299.99503 * 3 2 1 33 33 H 1.09005 * 109.46733 * 307.67342 * 4 3 2 34 34 H 1.09001 * 109.47649 * 187.67565 * 4 3 2 35 35 H 1.09004 * 109.46863 * 292.05062 * 6 5 4 36 36 H 1.08997 * 109.46667 * 52.04602 * 6 5 4 37 37 H 0.97006 * 119.99477 * 179.97438 * 10 9 7 38 38 H 1.09006 * 109.47027 * 173.95479 * 15 5 4 39 39 H 1.09005 * 109.47168 * 53.96120 * 15 5 4 40 40 H 1.07996 * 120.05581 * 0.02562 * 21 20 19 41 41 H 1.08001 * 119.91370 * 180.02562 * 22 21 20 42 42 H 1.08000 * 119.87026 * 180.02562 * 23 22 21 43 43 H 1.08003 * 120.08752 * 179.77178 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9816 0.6217 -1.2821 6 6 3.6858 -0.8153 -1.3573 7 6 3.9757 -1.3156 -2.7489 8 1 4.2964 -0.6253 -3.5150 9 6 3.8313 -2.6547 -3.0440 10 7 4.0847 -3.0914 -4.2584 11 14 3.2772 -3.8487 -1.7187 12 1 1.7951 -3.9424 -1.7252 13 1 3.8590 -5.1888 -1.9850 14 1 3.7367 -3.3642 -0.3924 15 6 5.4118 0.8770 -1.4998 16 6 5.6390 2.3580 -1.6604 17 7 5.8966 3.2055 -0.7035 18 7 6.0334 4.3849 -1.1990 19 6 5.8658 4.3300 -2.4995 20 6 5.9415 5.4664 -3.4423 21 6 5.7399 5.2586 -4.8077 22 6 5.8110 6.3224 -5.6832 23 6 6.0822 7.5942 -5.2114 24 6 6.2786 7.8093 -3.8568 25 9 6.5378 9.0548 -3.4022 26 6 6.2149 6.7506 -2.9707 27 8 5.6071 3.0452 -2.8150 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 1.6887 1.8464 0.8899 32 1 1.6886 1.8463 -0.8901 33 1 3.8484 0.5297 0.8126 34 1 3.9782 2.1712 0.1366 35 1 4.3080 -1.3522 -0.6411 36 1 2.6347 -0.9825 -1.1225 37 1 3.9835 -4.0336 -4.4659 38 1 5.7402 0.3592 -2.4010 39 1 5.9803 0.5127 -0.6440 40 1 5.5277 4.2666 -5.1783 41 1 5.6546 6.1618 -6.7397 42 1 6.1363 8.4235 -5.9011 43 1 6.3717 6.9177 -1.9152 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072689696.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:51 Heat of formation + Delta-G solvation = -5.990534 kcal Electronic energy + Delta-G solvation = -28231.620421 eV Core-core repulsion = 24001.446613 eV Total energy + Delta-G solvation = -4230.173808 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.22960 -44.04375 -39.30123 -38.17543 -36.44210 -36.05676 -33.14488 -32.52752 -31.05573 -30.64046 -29.74408 -27.82958 -26.29465 -25.22387 -24.56836 -23.15773 -22.20012 -22.05343 -21.86532 -20.14726 -18.44871 -17.32517 -17.01999 -16.64635 -16.59039 -16.49370 -16.12962 -15.92308 -15.87140 -15.28210 -14.91101 -14.81871 -14.40512 -14.15733 -13.75957 -13.60971 -13.52581 -12.90186 -12.75799 -12.44360 -12.30443 -12.29067 -12.06930 -11.87055 -11.76316 -11.61293 -11.45314 -11.22257 -10.91036 -10.82466 -10.56591 -10.45712 -10.34658 -9.85833 -9.43755 -9.26909 -9.11645 -8.74972 -8.54998 -7.66796 -6.08347 -4.05823 0.17945 0.77562 1.54446 2.20299 2.43273 3.25726 3.30321 3.37254 3.42372 3.66162 3.88051 4.11165 4.27718 4.41740 4.43104 4.55653 4.65919 4.70956 4.86189 5.17477 5.20721 5.25806 5.34532 5.42767 5.50113 5.55034 5.56871 5.62416 5.64735 5.65661 5.69546 5.79678 5.87138 5.89111 5.97357 6.00560 6.14466 6.22006 6.38809 6.87957 6.95459 7.45336 7.63733 7.72891 7.84672 8.33399 8.57365 8.97206 9.53527 11.04238 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014473 B = 0.002789 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.109354 B =10036.971615 C =10926.925099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.375 6.375 3 C 0.071 3.929 4 C 0.043 3.957 5 N -0.520 5.520 6 C 0.153 3.847 7 C -0.517 4.517 8 H 0.079 0.921 9 C 0.072 3.928 10 N -0.900 5.900 11 Si 0.875 3.125 12 H -0.275 1.275 13 H -0.289 1.289 14 H -0.265 1.265 15 C 0.143 3.857 16 C 0.211 3.789 17 N -0.297 5.297 18 N -0.269 5.269 19 C 0.182 3.818 20 C 0.017 3.983 21 C -0.094 4.094 22 C -0.089 4.089 23 C -0.135 4.135 24 C 0.098 3.902 25 F -0.134 7.134 26 C -0.109 4.109 27 O -0.203 6.203 28 H 0.081 0.919 29 H 0.033 0.967 30 H 0.040 0.960 31 H 0.045 0.955 32 H 0.055 0.945 33 H 0.044 0.956 34 H 0.084 0.916 35 H -0.008 1.008 36 H 0.072 0.928 37 H 0.264 0.736 38 H 0.128 0.872 39 H 0.079 0.921 40 H 0.144 0.856 41 H 0.144 0.856 42 H 0.142 0.858 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.023 18.008 1.203 18.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.294 6.294 3 C -0.006 4.006 4 C -0.086 4.086 5 N -0.246 5.246 6 C 0.029 3.971 7 C -0.555 4.555 8 H 0.097 0.903 9 C -0.130 4.130 10 N -0.539 5.539 11 Si 0.702 3.298 12 H -0.201 1.201 13 H -0.215 1.215 14 H -0.189 1.189 15 C 0.013 3.987 16 C 0.001 3.999 17 N -0.145 5.145 18 N -0.118 5.118 19 C -0.026 4.026 20 C 0.015 3.985 21 C -0.114 4.114 22 C -0.107 4.107 23 C -0.155 4.155 24 C 0.079 3.921 25 F -0.113 7.113 26 C -0.129 4.129 27 O -0.080 6.080 28 H 0.100 0.900 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.102 0.898 35 H 0.010 0.990 36 H 0.089 0.911 37 H 0.073 0.927 38 H 0.146 0.854 39 H 0.097 0.903 40 H 0.162 0.838 41 H 0.162 0.838 42 H 0.159 0.841 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 1.100 18.367 1.945 18.502 hybrid contribution -0.302 -1.135 0.179 1.188 sum 0.798 17.233 2.124 17.381 Atomic orbital electron populations 1.22690 0.82194 1.02420 0.99321 1.88050 1.18831 1.27528 1.95012 1.22484 0.93567 0.84994 0.99544 1.22308 0.93912 1.00448 0.91904 1.62003 1.12280 1.19893 1.30445 1.20616 0.98771 0.80277 0.97462 1.21059 1.45955 0.93721 0.94778 0.90269 1.24848 0.94885 0.98083 0.95216 1.69899 1.49408 1.15281 1.19284 0.86859 0.79469 0.80495 0.82975 1.20090 1.21474 1.18939 1.20701 0.92530 0.80061 1.05367 1.28584 0.95026 0.98788 0.77499 1.74437 1.18441 0.95182 1.26479 1.74625 1.16575 1.15658 1.04900 1.25116 1.01880 0.83113 0.92494 1.16885 1.03277 0.87726 0.90573 1.21463 0.97720 1.00932 0.91271 1.20981 0.98079 0.91039 1.00587 1.21385 1.01215 0.99057 0.93799 1.17382 1.02615 0.79708 0.92391 1.91532 1.91553 1.38550 1.89646 1.21070 1.00357 0.90081 1.01390 1.84906 1.67058 1.18866 1.37218 0.90017 0.94845 0.94128 0.93678 0.92706 0.93809 0.89824 0.99046 0.91101 0.92664 0.85383 0.90337 0.83820 0.83808 0.84056 0.83073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.38 -6.73 7.72 -35.23 -0.27 -7.00 16 3 C 0.07 1.15 6.23 37.16 0.23 1.38 16 4 C 0.04 0.74 5.39 -3.82 -0.02 0.72 16 5 N -0.52 -10.43 4.45 -237.51 -1.06 -11.49 16 6 C 0.15 3.57 3.56 -4.98 -0.02 3.55 16 7 C -0.52 -13.95 8.84 -34.44 -0.30 -14.26 16 8 H 0.08 2.31 7.40 -52.49 -0.39 1.92 16 9 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 10 N -0.90 -26.69 13.96 55.43 0.77 -25.92 16 11 Si 0.87 21.16 27.53 -169.99 -4.68 16.48 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.26 -6.22 6.46 56.52 0.36 -5.86 16 15 C 0.14 2.59 5.43 -4.98 -0.03 2.57 16 16 C 0.21 3.67 7.15 -12.89 -0.09 3.58 16 17 N -0.30 -5.19 11.08 32.58 0.36 -4.83 16 18 N -0.27 -4.47 11.92 32.07 0.38 -4.09 16 19 C 0.18 2.77 7.99 -13.87 -0.11 2.66 16 20 C 0.02 0.21 5.87 -104.99 -0.62 -0.41 16 21 C -0.09 -0.94 9.72 -39.18 -0.38 -1.32 16 22 C -0.09 -0.67 10.03 -39.65 -0.40 -1.07 16 23 C -0.14 -1.03 10.02 -39.43 -0.40 -1.42 16 24 C 0.10 0.93 7.29 -39.47 -0.29 0.65 16 25 F -0.13 -1.35 17.26 2.25 0.04 -1.31 16 26 C -0.11 -1.17 9.68 -39.12 -0.38 -1.55 16 27 O -0.20 -3.43 10.67 4.05 0.04 -3.38 16 28 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.04 0.76 8.03 -51.93 -0.42 0.34 16 34 H 0.08 1.39 6.03 -51.93 -0.31 1.08 16 35 H -0.01 -0.19 6.98 -51.93 -0.36 -0.56 16 36 H 0.07 1.71 4.65 -51.93 -0.24 1.47 16 37 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 38 H 0.13 2.49 6.55 -51.93 -0.34 2.15 16 39 H 0.08 1.31 8.12 -51.93 -0.42 0.89 16 40 H 0.14 1.41 7.93 -52.49 -0.42 0.99 16 41 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 42 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 43 H 0.15 1.61 7.86 -52.48 -0.41 1.19 16 LS Contribution 367.63 15.07 5.54 5.54 Total: -1.00 -31.48 367.63 -6.10 -37.58 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -5.44 Total: -0.12 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: -1.78 Total: -1.48 kcal Atomic # 7 Polarization: -46.78 SS G_CDS: 0.46 Total: -46.32 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: -0.23 Total: -10.38 kcal Atomic # 9 Polarization: -1.35 SS G_CDS: 0.04 Total: -1.31 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.68 Total: 16.48 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.48 -6.10 -37.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072689696.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.590 kcal (2) G-P(sol) polarization free energy of solvation -31.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds