Wall clock time and date at job start Tue Mar 31 2020 18:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42899 * 113.99734 * 2 1 4 4 C 1.53000 * 109.46967 * 180.02562 * 3 2 1 5 5 N 1.46902 * 109.47246 * 67.67016 * 4 3 2 6 6 C 1.46900 * 111.00240 * 286.02209 * 5 4 3 7 7 C 1.50694 * 109.47028 * 172.04810 * 6 5 4 8 8 H 1.07993 * 120.00440 * 356.99923 * 7 6 5 9 9 C 1.37885 * 119.99756 * 176.99866 * 7 6 5 10 10 N 1.31518 * 119.99698 * 180.02562 * 9 7 6 11 11 Si 1.86797 * 119.99930 * 359.97438 * 9 7 6 12 12 H 1.48506 * 109.46910 * 90.00539 * 11 9 7 13 13 H 1.48501 * 109.47187 * 210.00085 * 11 9 7 14 14 H 1.48494 * 109.47198 * 330.00335 * 11 9 7 15 15 C 1.46903 * 110.99735 * 162.06705 * 5 4 3 16 16 C 1.50691 * 109.47297 * 293.95304 * 15 5 4 17 17 N 1.30393 * 126.18341 * 89.98009 * 16 15 5 18 18 N 1.28663 * 109.52355 * 179.97438 * 17 16 15 19 19 C 1.31238 * 109.25085 * 0.02562 * 18 17 16 20 20 C 1.47855 * 126.37975 * 180.02562 * 19 18 17 21 21 C 1.39579 * 120.12553 * 180.02562 * 20 19 18 22 22 C 1.37957 * 119.90051 * 179.97438 * 21 20 19 23 23 C 1.38336 * 120.17481 * 0.02562 * 22 21 20 24 24 C 1.38558 * 120.25968 * 359.73508 * 23 22 21 25 25 F 1.35098 * 119.95265 * 180.26478 * 24 23 22 26 26 C 1.38209 * 120.09079 * 0.51556 * 24 23 22 27 27 O 1.34410 * 126.19343 * 270.28563 * 16 15 5 28 28 H 1.08998 * 109.46710 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47087 * 300.00315 * 1 2 3 30 30 H 1.08998 * 109.46621 * 59.99741 * 1 2 3 31 31 H 1.08996 * 109.47531 * 60.00129 * 3 2 1 32 32 H 1.09003 * 109.46866 * 299.99503 * 3 2 1 33 33 H 1.09005 * 109.46733 * 307.67342 * 4 3 2 34 34 H 1.09001 * 109.47649 * 187.67565 * 4 3 2 35 35 H 1.09004 * 109.46863 * 292.05062 * 6 5 4 36 36 H 1.08997 * 109.46667 * 52.04602 * 6 5 4 37 37 H 0.97006 * 119.99477 * 179.97438 * 10 9 7 38 38 H 1.09006 * 109.47027 * 173.95479 * 15 5 4 39 39 H 1.09005 * 109.47168 * 53.96120 * 15 5 4 40 40 H 1.07996 * 120.05581 * 0.02562 * 21 20 19 41 41 H 1.08001 * 119.91370 * 180.02562 * 22 21 20 42 42 H 1.08000 * 119.87026 * 180.02562 * 23 22 21 43 43 H 1.08003 * 120.08752 * 179.77178 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9816 0.6217 -1.2821 6 6 3.6858 -0.8153 -1.3573 7 6 3.9757 -1.3156 -2.7489 8 1 4.2964 -0.6253 -3.5150 9 6 3.8313 -2.6547 -3.0440 10 7 4.0847 -3.0914 -4.2584 11 14 3.2772 -3.8487 -1.7187 12 1 1.7951 -3.9424 -1.7252 13 1 3.8590 -5.1888 -1.9850 14 1 3.7367 -3.3642 -0.3924 15 6 5.4118 0.8770 -1.4998 16 6 5.6390 2.3580 -1.6604 17 7 5.8966 3.2055 -0.7035 18 7 6.0334 4.3849 -1.1990 19 6 5.8658 4.3300 -2.4995 20 6 5.9415 5.4664 -3.4423 21 6 5.7399 5.2586 -4.8077 22 6 5.8110 6.3224 -5.6832 23 6 6.0822 7.5942 -5.2114 24 6 6.2786 7.8093 -3.8568 25 9 6.5378 9.0548 -3.4022 26 6 6.2149 6.7506 -2.9707 27 8 5.6071 3.0452 -2.8150 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 1.6887 1.8464 0.8899 32 1 1.6886 1.8463 -0.8901 33 1 3.8484 0.5297 0.8126 34 1 3.9782 2.1712 0.1366 35 1 4.3080 -1.3522 -0.6411 36 1 2.6347 -0.9825 -1.1225 37 1 3.9835 -4.0336 -4.4659 38 1 5.7402 0.3592 -2.4010 39 1 5.9803 0.5127 -0.6440 40 1 5.5277 4.2666 -5.1783 41 1 5.6546 6.1618 -6.7397 42 1 6.1363 8.4235 -5.9011 43 1 6.3717 6.9177 -1.9152 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072689696.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:50 Heat of formation + Delta-G solvation = -30.007735 kcal Electronic energy + Delta-G solvation = -28232.661885 eV Core-core repulsion = 24001.446613 eV Total energy + Delta-G solvation = -4231.215272 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.99057 -45.34139 -40.08522 -39.56720 -37.86179 -37.37038 -34.75199 -34.03825 -31.99472 -31.63388 -31.28683 -29.38365 -27.51811 -26.66374 -25.64849 -24.19469 -23.77525 -23.16049 -22.97195 -21.74378 -19.37452 -19.03014 -18.59199 -17.87191 -17.48687 -17.45867 -17.30501 -17.07003 -16.69220 -16.58287 -16.37034 -16.05779 -15.88134 -15.39727 -15.06109 -14.83464 -14.44254 -14.33589 -14.05001 -13.76699 -13.73327 -13.55551 -13.36195 -13.12798 -12.94768 -12.87562 -12.67529 -12.46745 -12.42400 -12.24557 -12.16217 -12.05033 -11.77709 -11.48606 -11.19892 -10.76469 -10.42378 -10.04775 -9.72832 -9.25898 -8.23923 -6.25400 -0.77630 0.03234 0.40545 0.98748 1.21245 1.39857 1.40899 1.52119 2.39140 2.46479 2.48699 2.90125 3.01458 3.09884 3.12694 3.23758 3.60762 3.82766 3.87910 3.95781 4.04994 4.13094 4.16847 4.26437 4.28218 4.35723 4.41383 4.54135 4.57756 4.59676 4.64280 4.66837 4.83912 4.86687 4.89041 4.95121 5.02136 5.13233 5.22006 5.23694 5.67950 5.68562 5.89911 6.09877 6.33507 6.55540 6.79448 7.03418 7.37419 8.91908 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014473 B = 0.002789 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.109354 B =10036.971615 C =10926.925099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.407 6.407 3 C 0.072 3.928 4 C 0.046 3.954 5 N -0.534 5.534 6 C 0.168 3.832 7 C -0.515 4.515 8 H 0.043 0.957 9 C 0.016 3.984 10 N -0.945 5.945 11 Si 0.939 3.061 12 H -0.268 1.268 13 H -0.286 1.286 14 H -0.252 1.252 15 C 0.150 3.850 16 C 0.199 3.801 17 N -0.299 5.299 18 N -0.292 5.292 19 C 0.199 3.801 20 C -0.013 4.013 21 C -0.096 4.096 22 C -0.078 4.078 23 C -0.114 4.114 24 C 0.090 3.910 25 F -0.138 7.138 26 C -0.111 4.111 27 O -0.215 6.215 28 H 0.086 0.914 29 H 0.060 0.940 30 H 0.041 0.959 31 H 0.077 0.923 32 H 0.046 0.954 33 H 0.047 0.953 34 H 0.090 0.910 35 H -0.010 1.010 36 H 0.070 0.930 37 H 0.265 0.735 38 H 0.106 0.894 39 H 0.094 0.906 40 H 0.141 0.859 41 H 0.180 0.820 42 H 0.175 0.825 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.317 19.557 1.463 19.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.327 6.327 3 C -0.004 4.004 4 C -0.082 4.082 5 N -0.260 5.260 6 C 0.042 3.958 7 C -0.553 4.553 8 H 0.062 0.938 9 C -0.182 4.182 10 N -0.586 5.586 11 Si 0.763 3.237 12 H -0.193 1.193 13 H -0.212 1.212 14 H -0.176 1.176 15 C 0.021 3.979 16 C -0.011 4.011 17 N -0.147 5.147 18 N -0.140 5.140 19 C -0.009 4.009 20 C -0.015 4.015 21 C -0.116 4.116 22 C -0.095 4.095 23 C -0.133 4.133 24 C 0.071 3.929 25 F -0.116 7.116 26 C -0.132 4.132 27 O -0.093 6.093 28 H 0.104 0.896 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.095 0.905 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.108 0.892 35 H 0.008 0.992 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.124 0.876 39 H 0.111 0.889 40 H 0.159 0.841 41 H 0.197 0.803 42 H 0.193 0.807 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.395 19.953 2.231 20.082 hybrid contribution -0.056 -1.390 -0.047 1.392 sum 0.339 18.563 2.184 18.694 Atomic orbital electron populations 1.22870 0.80275 1.03246 1.00700 1.87955 1.21018 1.28442 1.95249 1.22519 0.92509 0.84750 1.00643 1.22354 0.95047 1.00448 0.90386 1.61861 1.13544 1.17977 1.32577 1.20315 0.98559 0.82171 0.94755 1.21272 1.44855 0.93311 0.95895 0.93842 1.25666 0.95159 1.00019 0.97309 1.70037 1.51269 1.15812 1.21508 0.85834 0.79252 0.78031 0.80561 1.19316 1.21170 1.17552 1.20511 0.91830 0.80699 1.04896 1.28239 0.96607 0.98447 0.77814 1.74367 1.18142 0.95504 1.26651 1.74594 1.18485 1.15228 1.05662 1.25798 0.99291 0.83086 0.92688 1.17004 1.06417 0.87060 0.90974 1.21614 0.97370 1.01866 0.90737 1.21355 0.96349 0.90014 1.01805 1.21791 0.98245 1.00053 0.93213 1.17501 1.03117 0.79181 0.93118 1.91528 1.91651 1.38598 1.89840 1.21039 1.00474 0.90116 1.01543 1.84898 1.67471 1.19708 1.37262 0.89557 0.92155 0.94021 0.90512 0.93554 0.93468 0.89212 0.99189 0.91213 0.92553 0.87554 0.88873 0.84105 0.80307 0.80711 0.83718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.65 11.01 113.37 1.25 1.89 16 2 O -0.41 -13.97 7.72 -148.98 -1.15 -15.12 16 3 C 0.07 2.23 6.23 71.98 0.45 2.68 16 4 C 0.05 1.54 5.39 86.30 0.47 2.01 16 5 N -0.53 -21.63 4.45 -905.35 -4.03 -25.65 16 6 C 0.17 7.83 3.56 85.56 0.30 8.13 16 7 C -0.51 -28.59 8.84 25.60 0.23 -28.37 16 8 H 0.04 2.66 7.40 -2.91 -0.02 2.64 16 9 C 0.02 0.92 5.47 84.66 0.46 1.38 16 10 N -0.95 -57.57 13.96 21.45 0.30 -57.27 16 11 Si 0.94 43.69 27.53 68.60 1.89 45.58 16 12 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 13 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 14 H -0.25 -11.09 6.46 99.48 0.64 -10.45 16 15 C 0.15 5.61 5.43 85.55 0.46 6.08 16 16 C 0.20 7.13 7.15 88.32 0.63 7.76 16 17 N -0.30 -10.56 11.08 -165.33 -1.83 -12.39 16 18 N -0.29 -9.87 11.92 -166.30 -1.98 -11.85 16 19 C 0.20 6.19 7.99 87.33 0.70 6.88 16 20 C -0.01 -0.30 5.87 -20.10 -0.12 -0.42 16 21 C -0.10 -1.79 9.72 22.53 0.22 -1.58 16 22 C -0.08 -0.91 10.03 22.23 0.22 -0.69 16 23 C -0.11 -1.32 10.02 22.37 0.22 -1.10 16 24 C 0.09 1.54 7.29 22.34 0.16 1.70 16 25 F -0.14 -2.52 17.26 44.97 0.78 -1.74 16 26 C -0.11 -2.34 9.68 22.57 0.22 -2.12 16 27 O -0.21 -7.51 10.67 -8.43 -0.09 -7.60 16 28 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.04 1.04 8.14 -2.39 -0.02 1.03 16 31 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.05 1.57 8.03 -2.38 -0.02 1.55 16 34 H 0.09 2.93 6.03 -2.39 -0.01 2.91 16 35 H -0.01 -0.45 6.98 -2.38 -0.02 -0.47 16 36 H 0.07 3.33 4.65 -2.39 -0.01 3.32 16 37 H 0.27 15.17 8.31 -92.70 -0.77 14.40 16 38 H 0.11 4.41 6.55 -2.38 -0.02 4.39 16 39 H 0.09 3.16 8.12 -2.38 -0.02 3.14 16 40 H 0.14 2.69 7.93 -2.91 -0.02 2.67 16 41 H 0.18 0.90 8.06 -2.91 -0.02 0.87 16 42 H 0.18 0.92 8.06 -2.91 -0.02 0.89 16 43 H 0.14 3.13 7.86 -2.91 -0.02 3.11 16 Total: -1.00 -69.67 367.63 0.74 -68.92 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: 0.98 Total: 12.86 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: 5.88 Total: 4.25 kcal Atomic # 7 Polarization: -99.62 SS G_CDS: -7.54 Total: -107.16 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -1.24 Total: -22.72 kcal Atomic # 9 Polarization: -2.52 SS G_CDS: 0.78 Total: -1.74 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 1.89 Total: 45.58 kcal Total: -69.67 0.74 -68.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072689696.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.915 kcal (2) G-P(sol) polarization free energy of solvation -69.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds