Wall clock time and date at job start Tue Mar 31 2020 18:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42895 * 113.99915 * 2 1 4 4 C 1.53003 * 109.47131 * 179.97438 * 3 2 1 5 5 N 1.46907 * 109.46704 * 67.06532 * 4 3 2 6 6 C 1.46889 * 111.00127 * 290.01504 * 5 4 3 7 7 C 1.50698 * 109.47463 * 299.70198 * 6 5 4 8 8 H 1.08001 * 119.99640 * 354.96611 * 7 6 5 9 9 C 1.37878 * 120.00564 * 174.96028 * 7 6 5 10 10 N 1.31509 * 120.00600 * 179.97438 * 9 7 6 11 11 Si 1.86801 * 119.99689 * 0.02562 * 9 7 6 12 12 H 1.48501 * 109.47226 * 89.99565 * 11 9 7 13 13 H 1.48492 * 109.47296 * 209.99705 * 11 9 7 14 14 H 1.48504 * 109.47411 * 330.00036 * 11 9 7 15 15 C 1.46904 * 110.99669 * 53.97201 * 5 4 3 16 16 C 1.50699 * 109.47489 * 66.04917 * 15 5 4 17 17 N 1.30973 * 126.44037 * 89.99648 * 16 15 5 18 18 C 1.35225 * 105.58101 * 180.02562 * 17 16 15 19 19 C 1.48379 * 126.41812 * 179.97438 * 18 17 16 20 20 C 1.39360 * 120.09175 * 359.72407 * 19 18 17 21 21 C 1.37955 * 119.89898 * 179.71960 * 20 19 18 22 22 C 1.38562 * 120.09862 * 0.57422 * 21 20 19 23 23 F 1.35104 * 119.90761 * 179.69756 * 22 21 20 24 24 C 1.38564 * 120.18839 * 359.67975 * 22 21 20 25 25 C 1.37953 * 120.09443 * 0.04425 * 24 22 21 26 26 N 1.30779 * 107.16637 * 0.02562 * 18 17 16 27 27 O 1.21296 * 110.09704 * 359.97438 * 26 18 17 28 28 H 1.08992 * 109.47565 * 299.99970 * 1 2 3 29 29 H 1.09002 * 109.47136 * 59.99915 * 1 2 3 30 30 H 1.09005 * 109.47443 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46953 * 60.00271 * 3 2 1 32 32 H 1.09000 * 109.47577 * 300.00261 * 3 2 1 33 33 H 1.08995 * 109.47350 * 307.06808 * 4 3 2 34 34 H 1.09007 * 109.47202 * 187.05866 * 4 3 2 35 35 H 1.09004 * 109.47221 * 59.70256 * 6 5 4 36 36 H 1.09000 * 109.47303 * 179.69794 * 6 5 4 37 37 H 0.96995 * 120.00435 * 180.02562 * 10 9 7 38 38 H 1.08999 * 109.47353 * 306.03999 * 15 5 4 39 39 H 1.09004 * 109.46885 * 186.04730 * 15 5 4 40 40 H 1.07992 * 120.04513 * 359.97438 * 20 19 18 41 41 H 1.08007 * 119.94748 * 180.25492 * 21 20 19 42 42 H 1.08001 * 119.95282 * 180.02562 * 24 22 21 43 43 H 1.07999 * 120.04968 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9813 0.6077 -1.2747 6 6 3.6014 -0.8077 -1.3736 7 6 4.2434 -1.5800 -0.2501 8 1 4.9350 -1.0876 0.4174 9 6 3.9479 -2.9152 -0.0742 10 7 4.5086 -3.5893 0.9060 11 14 2.7521 -3.7671 -1.2290 12 1 3.4971 -4.3391 -2.3793 13 1 2.0523 -4.8563 -0.5017 14 1 1.7562 -2.7832 -1.7245 15 6 3.4556 1.3748 -2.4119 16 6 4.0623 2.7542 -2.4109 17 7 5.1678 3.1183 -3.0114 18 6 5.3147 4.4340 -2.7354 19 6 6.4208 5.3115 -3.1915 20 6 7.4451 4.7918 -3.9807 21 6 8.4685 5.6126 -4.4073 22 6 8.4853 6.9492 -4.0424 23 9 9.4927 7.7482 -4.4574 24 6 7.4716 7.4689 -3.2535 25 6 6.4414 6.6565 -2.8272 26 7 4.2998 4.7877 -1.9904 27 8 3.5735 3.8359 -1.7962 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6885 1.8463 0.8900 32 1 1.6885 1.8464 -0.8899 33 1 3.8484 0.5386 0.8208 34 1 3.9781 2.1727 0.1269 35 1 2.5174 -0.8987 -1.3040 36 1 3.9389 -1.2086 -2.3294 37 1 4.3009 -4.5287 1.0295 38 1 2.3719 1.4543 -2.3266 39 1 3.7104 0.8665 -3.3419 40 1 7.4355 3.7490 -4.2612 41 1 9.2606 5.2115 -5.0224 42 1 7.4883 8.5113 -2.9717 43 1 5.6515 7.0624 -2.2126 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072690638.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:44 Heat of formation + Delta-G solvation = 7.786755 kcal Electronic energy + Delta-G solvation = -28372.845133 eV Core-core repulsion = 24143.268753 eV Total energy + Delta-G solvation = -4229.576380 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.01642 -46.63308 -40.14970 -39.92214 -37.60198 -36.82845 -34.78455 -33.90430 -32.32436 -31.42427 -30.96179 -29.98129 -27.45532 -26.67125 -25.74316 -24.67057 -24.09649 -23.52536 -22.39126 -21.23232 -19.28254 -19.13658 -18.80727 -18.48914 -17.58641 -17.42508 -17.34236 -17.05573 -16.69145 -16.54491 -16.07290 -15.72605 -15.60498 -15.33980 -14.95162 -14.65858 -14.42773 -14.30901 -14.05147 -14.01611 -13.78578 -13.47327 -13.19785 -13.01144 -12.90175 -12.75348 -12.53539 -12.47359 -12.34717 -12.25401 -11.98338 -11.84267 -11.72393 -11.40879 -11.24984 -10.67487 -10.37383 -10.26155 -9.65935 -8.99938 -8.13701 -6.13357 -0.56689 0.12122 0.17820 1.26053 1.44281 1.46187 1.57409 1.67386 2.36434 2.47926 2.52810 2.81405 2.94883 3.10261 3.23482 3.27810 3.63559 3.77332 3.83468 4.03594 4.10519 4.12137 4.25514 4.35091 4.36240 4.48838 4.51104 4.57125 4.63431 4.67049 4.71446 4.84372 4.85089 4.90758 4.97212 4.98675 5.10889 5.24572 5.27177 5.44584 5.66496 5.68729 5.95467 6.22266 6.43172 6.65419 6.89670 7.01230 7.47891 9.03383 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.018393 B = 0.002570 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.966879 B =10892.167058 C =11837.577770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.393 6.393 3 C 0.029 3.971 4 C 0.060 3.940 5 N -0.534 5.534 6 C 0.165 3.835 7 C -0.491 4.491 8 H 0.030 0.970 9 C 0.008 3.992 10 N -0.959 5.959 11 Si 0.942 3.058 12 H -0.273 1.273 13 H -0.293 1.293 14 H -0.234 1.234 15 C 0.135 3.865 16 C 0.215 3.785 17 N -0.481 5.481 18 C 0.204 3.796 19 C -0.051 4.051 20 C -0.050 4.050 21 C -0.151 4.151 22 C 0.110 3.890 23 F -0.137 7.137 24 C -0.148 4.148 25 C -0.056 4.056 26 N -0.389 5.389 27 O 0.078 5.922 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.046 0.954 36 H 0.026 0.974 37 H 0.261 0.739 38 H 0.097 0.903 39 H 0.129 0.871 40 H 0.146 0.854 41 H 0.165 0.835 42 H 0.168 0.832 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.770 21.030 -11.043 23.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.312 6.312 3 C -0.049 4.049 4 C -0.068 4.068 5 N -0.259 5.259 6 C 0.039 3.961 7 C -0.530 4.530 8 H 0.049 0.951 9 C -0.188 4.188 10 N -0.601 5.601 11 Si 0.766 3.234 12 H -0.198 1.198 13 H -0.220 1.220 14 H -0.157 1.157 15 C 0.005 3.995 16 C -0.006 4.006 17 N -0.215 5.215 18 C -0.066 4.066 19 C -0.053 4.053 20 C -0.070 4.070 21 C -0.169 4.169 22 C 0.090 3.910 23 F -0.116 7.116 24 C -0.167 4.167 25 C -0.076 4.076 26 N -0.097 5.097 27 O 0.019 5.981 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.064 0.936 36 H 0.044 0.956 37 H 0.070 0.930 38 H 0.114 0.886 39 H 0.147 0.853 40 H 0.163 0.837 41 H 0.182 0.818 42 H 0.185 0.815 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -1.886 21.496 -10.945 24.196 hybrid contribution -1.034 -0.747 0.223 1.295 sum -2.921 20.749 -10.722 23.538 Atomic orbital electron populations 1.22903 0.81065 1.02868 1.00875 1.88269 1.20253 1.27622 1.95081 1.23284 0.94735 0.85401 1.01506 1.22177 0.92120 0.99211 0.93302 1.62007 1.59366 1.03832 1.00671 1.20258 0.96975 0.83036 0.95814 1.21094 1.24456 0.94587 1.12861 0.95134 1.25715 0.97950 0.98159 0.96961 1.70064 1.46610 1.09565 1.33858 0.85796 0.80227 0.78519 0.78869 1.19837 1.21984 1.15703 1.20805 0.98248 0.82110 0.98313 1.28866 0.89345 0.93489 0.88903 1.72012 1.15618 1.09376 1.24450 1.24193 0.96140 0.89525 0.96710 1.17589 0.92836 0.92334 1.02517 1.21166 0.91190 1.00969 0.93677 1.21308 1.00849 0.91761 1.02984 1.18034 0.86601 0.88980 0.97349 1.91524 1.58369 1.73279 1.88405 1.21276 0.93466 1.02505 0.99445 1.21120 0.98235 0.90974 0.97273 1.74804 1.05563 1.09919 1.19430 1.85253 1.42530 1.14463 1.55842 0.93180 0.92539 0.90324 0.91838 0.91286 0.91380 0.90407 0.93615 0.95641 0.92995 0.88564 0.85298 0.83658 0.81786 0.81467 0.83520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 11.01 113.37 1.25 1.73 16 2 O -0.39 -13.63 7.58 -148.98 -1.13 -14.76 16 3 C 0.03 0.83 5.69 71.98 0.41 1.24 16 4 C 0.06 2.14 5.46 86.30 0.47 2.61 16 5 N -0.53 -20.02 4.74 -905.35 -4.29 -24.31 16 6 C 0.16 7.24 3.38 85.56 0.29 7.53 16 7 C -0.49 -27.45 8.77 25.60 0.22 -27.23 16 8 H 0.03 1.94 7.23 -2.91 -0.02 1.92 16 9 C 0.01 0.45 5.47 84.66 0.46 0.92 16 10 N -0.96 -60.23 13.96 21.45 0.30 -59.93 16 11 Si 0.94 43.13 27.57 68.60 1.89 45.02 16 12 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 13 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 14 H -0.23 -9.57 6.40 99.48 0.64 -8.93 16 15 C 0.13 3.75 5.23 85.56 0.45 4.20 16 16 C 0.22 6.13 7.07 88.36 0.62 6.75 16 17 N -0.48 -14.64 11.26 -302.47 -3.40 -18.05 16 18 C 0.20 5.75 7.80 137.28 1.07 6.82 16 19 C -0.05 -1.18 5.88 -20.04 -0.12 -1.30 16 20 C -0.05 -1.02 9.70 22.47 0.22 -0.81 16 21 C -0.15 -2.49 10.01 22.28 0.22 -2.27 16 22 C 0.11 1.85 7.30 22.43 0.16 2.01 16 23 F -0.14 -2.38 17.26 44.97 0.78 -1.61 16 24 C -0.15 -2.26 10.01 22.28 0.22 -2.04 16 25 C -0.06 -1.05 9.69 22.47 0.22 -0.83 16 26 N -0.39 -10.99 11.86 -59.09 -0.70 -11.69 16 27 O 0.08 2.13 10.90 74.61 0.81 2.95 16 28 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 31 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.07 1.64 5.80 -2.39 -0.01 1.62 16 33 H 0.07 3.01 6.33 -2.39 -0.02 3.00 16 34 H 0.08 2.53 7.16 -2.38 -0.02 2.51 16 35 H 0.05 1.97 3.99 -2.39 -0.01 1.96 16 36 H 0.03 1.10 7.73 -2.39 -0.02 1.09 16 37 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 38 H 0.10 2.22 5.71 -2.39 -0.01 2.20 16 39 H 0.13 3.31 8.01 -2.38 -0.02 3.29 16 40 H 0.15 3.01 7.87 -2.91 -0.02 2.99 16 41 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 42 H 0.17 1.64 8.06 -2.91 -0.02 1.62 16 43 H 0.15 2.50 7.87 -2.91 -0.02 2.48 16 Total: -1.00 -70.53 362.90 1.41 -69.12 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: 0.98 Total: 13.90 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: 6.18 Total: -0.65 kcal Atomic # 7 Polarization: -105.88 SS G_CDS: -8.10 Total: -113.98 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: -0.32 Total: -11.81 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.78 Total: -1.61 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 1.89 Total: 45.02 kcal Total: -70.53 1.41 -69.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072690638.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.906 kcal (2) G-P(sol) polarization free energy of solvation -70.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds