Wall clock time and date at job start Tue Mar 31 2020 18:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21284 * 119.99822 * 2 1 4 4 N 1.34779 * 119.99914 * 179.97438 * 2 1 3 5 5 C 1.40055 * 119.99895 * 185.22363 * 4 2 1 6 6 C 1.39043 * 119.96129 * 34.26138 * 5 4 2 7 7 C 1.38111 * 120.27019 * 180.02562 * 6 5 4 8 8 C 1.38334 * 120.19616 * 359.97438 * 7 6 5 9 9 F 1.35101 * 120.03996 * 179.97438 * 8 7 6 10 10 C 1.39823 * 119.92152 * 0.02562 * 8 7 6 11 11 C 1.47699 * 120.13157 * 179.97438 * 10 8 7 12 12 O 1.21570 * 120.00149 * 45.43573 * 11 10 8 13 13 N 1.34782 * 119.99811 * 225.43057 * 11 10 8 14 14 C 1.46971 * 120.59062 * 185.27822 * 13 11 10 15 15 C 1.53367 * 108.63401 * 235.20461 * 14 13 11 16 16 N 1.46968 * 108.63662 * 310.57795 * 15 14 13 17 17 C 1.36924 * 120.59527 * 235.20182 * 16 15 14 18 18 H 1.08002 * 120.00026 * 30.30188 * 17 16 15 19 19 C 1.38820 * 120.00181 * 210.57915 * 17 16 15 20 20 N 1.31611 * 119.99686 * 8.59182 * 19 17 16 21 21 Si 1.86800 * 120.00051 * 188.59543 * 19 17 16 22 22 H 1.48509 * 109.47039 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47133 * 119.99658 * 21 19 17 24 24 H 1.48502 * 109.47136 * 239.99995 * 21 19 17 25 25 C 1.46963 * 118.80925 * 55.47957 * 16 15 14 26 26 C 1.46956 * 120.59371 * 5.25951 * 13 11 10 27 27 C 1.38480 * 119.96352 * 214.51442 * 5 4 2 28 28 H 1.08992 * 109.47610 * 270.00469 * 1 2 3 29 29 H 1.09000 * 109.47022 * 30.00820 * 1 2 3 30 30 H 1.09004 * 109.46739 * 149.99835 * 1 2 3 31 31 H 0.97000 * 119.99817 * 5.22920 * 4 2 1 32 32 H 1.08000 * 119.86644 * 0.02562 * 6 5 4 33 33 H 1.07996 * 119.90630 * 179.97438 * 7 6 5 34 34 H 1.09001 * 109.60404 * 115.46470 * 14 13 11 35 35 H 1.08995 * 109.60858 * 354.95203 * 14 13 11 36 36 H 1.08997 * 109.61054 * 190.83440 * 15 14 13 37 37 H 1.09003 * 109.60981 * 70.32522 * 15 14 13 38 38 H 0.97002 * 119.99598 * 180.02562 * 20 19 17 39 39 H 1.09002 * 109.61452 * 64.26388 * 25 16 15 40 40 H 1.08997 * 109.60839 * 184.77956 * 25 16 15 41 41 H 1.09005 * 109.60666 * 244.53482 * 26 13 11 42 42 H 1.08997 * 109.61054 * 5.04836 * 26 13 11 43 43 H 1.08003 * 120.09922 * 359.97438 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5771 -1.1697 0.1110 6 6 4.2140 -0.2069 0.8859 7 6 5.5905 -0.2031 0.9989 8 6 6.3452 -1.1581 0.3416 9 9 7.6915 -1.1511 0.4539 10 6 5.7131 -2.1301 -0.4399 11 6 6.5144 -3.1516 -1.1441 12 8 7.4151 -3.7247 -0.5627 13 7 6.2468 -3.4484 -2.4313 14 6 6.9573 -4.5414 -3.1101 15 6 7.6096 -3.9863 -4.3823 16 7 6.6019 -3.2231 -5.1321 17 6 6.3302 -3.5246 -6.4398 18 1 6.4380 -4.5393 -6.7937 19 6 5.9217 -2.5250 -7.3122 20 7 5.9573 -1.2654 -6.9326 21 14 5.3215 -2.9679 -9.0248 22 1 5.3790 -4.4410 -9.2040 23 1 3.9216 -2.5024 -9.1944 24 1 6.1873 -2.3124 -10.0377 25 6 5.8956 -2.1265 -4.4550 26 6 5.2393 -2.6852 -3.1810 27 6 4.3219 -2.1278 -0.5560 28 1 -0.3634 0.0001 1.0276 29 1 -0.3633 0.8899 -0.5140 30 1 -0.3633 -0.8900 -0.5139 31 1 1.6989 -2.0055 -0.0757 32 1 3.6301 0.5410 1.4017 33 1 6.0792 0.5477 1.6020 34 1 6.2507 -5.3281 -3.3746 35 1 7.7260 -4.9433 -2.4502 36 1 7.9753 -4.8101 -4.9952 37 1 8.4384 -3.3317 -4.1127 38 1 5.6716 -0.5669 -7.5421 39 1 6.6052 -1.3425 -4.1904 40 1 5.1292 -1.7219 -5.1159 41 1 4.4105 -3.3399 -3.4507 42 1 4.8736 -1.8615 -2.5681 43 1 3.8278 -2.8736 -1.1611 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073100098.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:17 Heat of formation + Delta-G solvation = -46.617366 kcal Electronic energy + Delta-G solvation = -29344.100718 eV Core-core repulsion = 25112.165198 eV Total energy + Delta-G solvation = -4231.935520 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.79752 -40.85379 -39.79765 -38.13249 -36.77168 -34.91174 -33.96053 -32.12973 -31.00010 -30.88442 -30.02329 -28.54253 -27.04193 -24.62499 -23.38165 -23.20858 -22.47632 -21.42261 -20.35593 -19.13526 -17.84493 -17.62783 -17.52136 -16.70605 -16.40737 -15.98663 -15.78665 -15.45488 -15.18636 -14.81653 -14.53465 -14.34708 -14.15181 -13.68583 -13.64109 -13.40251 -13.30056 -13.27427 -13.18846 -12.89171 -12.74793 -12.43556 -12.34605 -11.66671 -11.51794 -11.26939 -10.92406 -10.74008 -10.55480 -10.50225 -10.28969 -10.20058 -10.08473 -9.89906 -9.62397 -9.10864 -8.62801 -8.34471 -8.22712 -6.70954 -5.86373 -3.37187 0.73944 0.90618 2.21724 2.64080 2.91778 3.25000 3.30859 3.38744 3.40588 3.58707 4.16297 4.31512 4.40127 4.50257 4.59988 4.79396 4.91782 4.97063 5.03892 5.20788 5.28346 5.31677 5.45534 5.52677 5.75733 5.83098 5.83765 5.86865 5.96111 5.98307 6.06397 6.11484 6.16447 6.33787 6.41074 6.65979 6.77229 6.90000 7.00567 7.21161 7.52285 7.67688 7.75244 7.81117 8.35824 8.42436 9.10829 9.71181 10.28891 11.19943 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010449 B = 0.003905 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2678.911569 B = 7168.212798 C = 8999.560771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.511 3.489 3 O -0.524 6.524 4 N -0.672 5.672 5 C 0.126 3.874 6 C -0.074 4.074 7 C -0.141 4.141 8 C 0.136 3.864 9 F -0.123 7.123 10 C -0.134 4.134 11 C 0.554 3.446 12 O -0.542 6.542 13 N -0.586 5.586 14 C 0.096 3.904 15 C 0.130 3.870 16 N -0.592 5.592 17 C -0.253 4.253 18 H 0.068 0.932 19 C 0.003 3.997 20 N -0.906 5.906 21 Si 0.907 3.093 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.289 1.289 25 C 0.156 3.844 26 C 0.072 3.928 27 C -0.082 4.082 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.084 0.916 31 H 0.414 0.586 32 H 0.145 0.855 33 H 0.145 0.855 34 H 0.065 0.935 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.025 0.975 38 H 0.255 0.745 39 H 0.022 0.978 40 H 0.110 0.890 41 H 0.064 0.936 42 H 0.076 0.924 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.646 -0.132 16.153 19.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.299 3.701 3 O -0.399 6.399 4 N -0.319 5.319 5 C 0.032 3.968 6 C -0.094 4.094 7 C -0.160 4.160 8 C 0.115 3.885 9 F -0.101 7.101 10 C -0.139 4.139 11 C 0.341 3.659 12 O -0.421 6.421 13 N -0.318 5.318 14 C -0.028 4.028 15 C 0.003 3.997 16 N -0.315 5.315 17 C -0.383 4.383 18 H 0.086 0.914 19 C -0.195 4.195 20 N -0.551 5.551 21 Si 0.737 3.263 22 H -0.202 1.202 23 H -0.215 1.215 24 H -0.216 1.216 25 C 0.029 3.971 26 C -0.052 4.052 27 C -0.103 4.103 28 H 0.116 0.884 29 H 0.117 0.883 30 H 0.103 0.897 31 H 0.250 0.750 32 H 0.163 0.837 33 H 0.163 0.837 34 H 0.083 0.917 35 H 0.102 0.898 36 H 0.086 0.914 37 H 0.043 0.957 38 H 0.066 0.934 39 H 0.041 0.959 40 H 0.128 0.872 41 H 0.083 0.917 42 H 0.094 0.906 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -10.803 0.467 16.307 19.566 hybrid contribution -0.358 -0.479 -1.067 1.223 sum -11.161 -0.011 15.240 18.890 Atomic orbital electron populations 1.21890 0.90471 1.05577 1.05103 1.21048 0.90978 0.83031 0.75008 1.90771 1.70512 1.31153 1.47468 1.43630 1.04773 1.10192 1.73288 1.17518 0.83173 0.98050 0.98030 1.21049 0.93669 0.98204 0.96505 1.20972 0.93760 0.99329 1.01960 1.17616 0.77603 0.95644 0.97666 1.91562 1.28616 1.95779 1.94141 1.19802 0.93974 0.98398 1.01735 1.17999 0.83456 0.82415 0.82011 1.90766 1.31196 1.53249 1.66840 1.47987 1.39896 1.34099 1.09784 1.22260 0.96677 0.88344 0.95471 1.21317 0.91439 0.95735 0.91186 1.44007 1.40973 1.37144 1.09401 1.19282 1.41198 0.92928 0.84866 0.91387 1.25186 1.01338 0.95043 0.97944 1.69914 1.50904 0.98646 1.35628 0.86141 0.78097 0.77876 0.84171 1.20199 1.21531 1.21561 1.21392 0.96901 0.89171 0.89603 1.23057 0.90938 0.95160 0.96065 1.20968 0.91679 0.99883 0.97767 0.88422 0.88330 0.89732 0.74998 0.83715 0.83712 0.91668 0.89822 0.91394 0.95724 0.93425 0.95942 0.87226 0.91727 0.90564 0.83877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.77 10.31 36.01 0.37 -0.40 16 2 C 0.51 4.61 7.67 -10.98 -0.08 4.53 16 3 O -0.52 -7.08 14.84 5.55 0.08 -7.00 16 4 N -0.67 -5.44 5.34 -9.88 -0.05 -5.49 16 5 C 0.13 1.42 6.25 -83.71 -0.52 0.89 16 6 C -0.07 -0.87 8.64 -39.33 -0.34 -1.21 16 7 C -0.14 -1.74 10.01 -39.59 -0.40 -2.14 16 8 C 0.14 2.09 7.25 -38.95 -0.28 1.81 16 9 F -0.12 -2.14 16.40 2.25 0.04 -2.10 16 10 C -0.13 -2.11 4.98 -104.93 -0.52 -2.64 16 11 C 0.55 10.37 7.07 -12.39 -0.09 10.28 16 12 O -0.54 -11.60 15.90 5.30 0.08 -11.52 16 13 N -0.59 -10.87 2.95 -173.38 -0.51 -11.38 16 14 C 0.10 1.78 6.60 -3.59 -0.02 1.75 16 15 C 0.13 2.76 6.67 -3.60 -0.02 2.73 16 16 N -0.59 -14.48 2.96 -171.76 -0.51 -14.99 16 17 C -0.25 -6.68 9.60 -15.06 -0.14 -6.83 16 18 H 0.07 1.75 7.84 -52.49 -0.41 1.34 16 19 C 0.00 0.09 5.11 -17.43 -0.09 0.00 16 20 N -0.91 -25.48 10.81 55.49 0.60 -24.88 16 21 Si 0.91 20.96 29.56 -169.99 -5.03 15.93 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 C 0.16 3.61 5.50 -3.36 -0.02 3.59 16 26 C 0.07 1.30 5.31 -3.37 -0.02 1.28 16 27 C -0.08 -1.02 7.33 -38.98 -0.29 -1.31 16 28 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.41 1.90 8.82 -40.82 -0.36 1.54 16 32 H 0.15 1.62 6.47 -52.49 -0.34 1.28 16 33 H 0.15 1.43 8.06 -52.49 -0.42 1.01 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.08 1.52 6.99 -51.93 -0.36 1.15 16 36 H 0.07 1.35 7.93 -51.93 -0.41 0.94 16 37 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 39 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.11 2.79 5.84 -51.93 -0.30 2.49 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.08 1.26 4.86 -51.93 -0.25 1.01 16 43 H 0.14 1.55 7.03 -52.48 -0.37 1.18 16 LS Contribution 357.53 15.07 5.39 5.39 Total: -1.00 -34.55 357.53 -7.70 -42.26 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -5.33 Total: 1.45 kcal Atomic # 6 Polarization: 14.82 SS G_CDS: -2.47 Total: 12.35 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: -0.47 Total: -56.75 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: 0.17 Total: -18.52 kcal Atomic # 9 Polarization: -2.14 SS G_CDS: 0.04 Total: -2.10 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.03 Total: 15.93 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.55 -7.70 -42.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073100098.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.361 kcal (2) G-P(sol) polarization free energy of solvation -34.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds