Wall clock time and date at job start Tue Mar 31 2020 18:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21284 * 119.99822 * 2 1 4 4 N 1.34779 * 119.99914 * 179.97438 * 2 1 3 5 5 C 1.40055 * 119.99895 * 185.22363 * 4 2 1 6 6 C 1.39043 * 119.96129 * 34.26138 * 5 4 2 7 7 C 1.38111 * 120.27019 * 180.02562 * 6 5 4 8 8 C 1.38334 * 120.19616 * 359.97438 * 7 6 5 9 9 F 1.35101 * 120.03996 * 179.97438 * 8 7 6 10 10 C 1.39823 * 119.92152 * 0.02562 * 8 7 6 11 11 C 1.47699 * 120.13157 * 179.97438 * 10 8 7 12 12 O 1.21570 * 120.00149 * 45.43573 * 11 10 8 13 13 N 1.34782 * 119.99811 * 225.43057 * 11 10 8 14 14 C 1.46971 * 120.59062 * 185.27822 * 13 11 10 15 15 C 1.53367 * 108.63401 * 235.20461 * 14 13 11 16 16 N 1.46968 * 108.63662 * 310.57795 * 15 14 13 17 17 C 1.36924 * 120.59527 * 235.20182 * 16 15 14 18 18 H 1.08002 * 120.00026 * 30.30188 * 17 16 15 19 19 C 1.38820 * 120.00181 * 210.57915 * 17 16 15 20 20 N 1.31611 * 119.99686 * 8.59182 * 19 17 16 21 21 Si 1.86800 * 120.00051 * 188.59543 * 19 17 16 22 22 H 1.48509 * 109.47039 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47133 * 119.99658 * 21 19 17 24 24 H 1.48502 * 109.47136 * 239.99995 * 21 19 17 25 25 C 1.46963 * 118.80925 * 55.47957 * 16 15 14 26 26 C 1.46956 * 120.59371 * 5.25951 * 13 11 10 27 27 C 1.38480 * 119.96352 * 214.51442 * 5 4 2 28 28 H 1.08992 * 109.47610 * 270.00469 * 1 2 3 29 29 H 1.09000 * 109.47022 * 30.00820 * 1 2 3 30 30 H 1.09004 * 109.46739 * 149.99835 * 1 2 3 31 31 H 0.97000 * 119.99817 * 5.22920 * 4 2 1 32 32 H 1.08000 * 119.86644 * 0.02562 * 6 5 4 33 33 H 1.07996 * 119.90630 * 179.97438 * 7 6 5 34 34 H 1.09001 * 109.60404 * 115.46470 * 14 13 11 35 35 H 1.08995 * 109.60858 * 354.95203 * 14 13 11 36 36 H 1.08997 * 109.61054 * 190.83440 * 15 14 13 37 37 H 1.09003 * 109.60981 * 70.32522 * 15 14 13 38 38 H 0.97002 * 119.99598 * 180.02562 * 20 19 17 39 39 H 1.09002 * 109.61452 * 64.26388 * 25 16 15 40 40 H 1.08997 * 109.60839 * 184.77956 * 25 16 15 41 41 H 1.09005 * 109.60666 * 244.53482 * 26 13 11 42 42 H 1.08997 * 109.61054 * 5.04836 * 26 13 11 43 43 H 1.08003 * 120.09922 * 359.97438 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5771 -1.1697 0.1110 6 6 4.2140 -0.2069 0.8859 7 6 5.5905 -0.2031 0.9989 8 6 6.3452 -1.1581 0.3416 9 9 7.6915 -1.1511 0.4539 10 6 5.7131 -2.1301 -0.4399 11 6 6.5144 -3.1516 -1.1441 12 8 7.4151 -3.7247 -0.5627 13 7 6.2468 -3.4484 -2.4313 14 6 6.9573 -4.5414 -3.1101 15 6 7.6096 -3.9863 -4.3823 16 7 6.6019 -3.2231 -5.1321 17 6 6.3302 -3.5246 -6.4398 18 1 6.4380 -4.5393 -6.7937 19 6 5.9217 -2.5250 -7.3122 20 7 5.9573 -1.2654 -6.9326 21 14 5.3215 -2.9679 -9.0248 22 1 5.3790 -4.4410 -9.2040 23 1 3.9216 -2.5024 -9.1944 24 1 6.1873 -2.3124 -10.0377 25 6 5.8956 -2.1265 -4.4550 26 6 5.2393 -2.6852 -3.1810 27 6 4.3219 -2.1278 -0.5560 28 1 -0.3634 0.0001 1.0276 29 1 -0.3633 0.8899 -0.5140 30 1 -0.3633 -0.8900 -0.5139 31 1 1.6989 -2.0055 -0.0757 32 1 3.6301 0.5410 1.4017 33 1 6.0792 0.5477 1.6020 34 1 6.2507 -5.3281 -3.3746 35 1 7.7260 -4.9433 -2.4502 36 1 7.9753 -4.8101 -4.9952 37 1 8.4384 -3.3317 -4.1127 38 1 5.6716 -0.5669 -7.5421 39 1 6.6052 -1.3425 -4.1904 40 1 5.1292 -1.7219 -5.1159 41 1 4.4105 -3.3399 -3.4507 42 1 4.8736 -1.8615 -2.5681 43 1 3.8278 -2.8736 -1.1611 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073100098.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:16 Heat of formation + Delta-G solvation = -69.801153 kcal Electronic energy + Delta-G solvation = -29345.106042 eV Core-core repulsion = 25112.165198 eV Total energy + Delta-G solvation = -4232.940844 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.02954 -41.83698 -41.04957 -39.21155 -38.44028 -35.79330 -35.69297 -33.63732 -32.47351 -31.67555 -31.62044 -29.31479 -28.76675 -26.11794 -24.92227 -24.59613 -23.64016 -22.64756 -21.59726 -20.52639 -19.24282 -18.67403 -18.53320 -18.10313 -17.53385 -17.40859 -16.99732 -16.81063 -16.50775 -16.21395 -15.95176 -15.48007 -15.35098 -15.22683 -15.15666 -14.92000 -14.70740 -14.49908 -14.13506 -14.00115 -13.74795 -13.34347 -13.25783 -13.09694 -12.95624 -12.76134 -12.60887 -12.47409 -12.22351 -12.04702 -11.96303 -11.71588 -11.42620 -11.18884 -10.97109 -10.64046 -10.20227 -9.92172 -9.21974 -8.66301 -7.87753 -5.43030 -0.35918 -0.07767 1.39265 1.48390 1.50802 1.57109 1.60842 1.83035 2.09134 2.46133 2.51211 3.08008 3.22216 3.28182 3.55256 3.57666 3.82466 3.90595 4.02843 4.17546 4.20357 4.29941 4.33751 4.49319 4.53333 4.57823 4.63908 4.71613 4.73113 4.77170 4.83044 4.95179 4.99740 5.03716 5.12805 5.19845 5.24962 5.47626 5.60509 5.63670 5.70573 6.30217 6.36547 6.39497 6.94997 7.09976 7.10020 7.75528 8.30236 9.16400 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010449 B = 0.003905 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2678.911569 B = 7168.212798 C = 8999.560771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.507 3.493 3 O -0.574 6.574 4 N -0.659 5.659 5 C 0.136 3.864 6 C -0.073 4.073 7 C -0.131 4.131 8 C 0.106 3.894 9 F -0.143 7.143 10 C -0.155 4.155 11 C 0.554 3.446 12 O -0.575 6.575 13 N -0.590 5.590 14 C 0.105 3.895 15 C 0.130 3.870 16 N -0.608 5.608 17 C -0.262 4.262 18 H 0.074 0.926 19 C -0.047 4.047 20 N -0.939 5.939 21 Si 0.974 3.026 22 H -0.264 1.264 23 H -0.286 1.286 24 H -0.297 1.297 25 C 0.161 3.839 26 C 0.092 3.908 27 C -0.077 4.077 28 H 0.119 0.881 29 H 0.094 0.906 30 H 0.112 0.888 31 H 0.433 0.567 32 H 0.154 0.846 33 H 0.167 0.833 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.002 0.998 38 H 0.252 0.748 39 H -0.014 1.014 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.095 0.905 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.579 -1.128 16.713 22.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.298 3.702 3 O -0.452 6.452 4 N -0.307 5.307 5 C 0.041 3.959 6 C -0.093 4.093 7 C -0.150 4.150 8 C 0.085 3.915 9 F -0.122 7.122 10 C -0.160 4.160 11 C 0.343 3.657 12 O -0.456 6.456 13 N -0.320 5.320 14 C -0.018 4.018 15 C 0.003 3.997 16 N -0.332 5.332 17 C -0.392 4.392 18 H 0.092 0.908 19 C -0.242 4.242 20 N -0.585 5.585 21 Si 0.801 3.199 22 H -0.188 1.188 23 H -0.213 1.213 24 H -0.224 1.224 25 C 0.035 3.965 26 C -0.032 4.032 27 C -0.098 4.098 28 H 0.138 0.862 29 H 0.113 0.887 30 H 0.131 0.869 31 H 0.273 0.727 32 H 0.172 0.828 33 H 0.185 0.815 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.098 0.902 37 H 0.020 0.980 38 H 0.061 0.939 39 H 0.004 0.996 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.113 0.887 43 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -13.772 -0.582 16.883 21.795 hybrid contribution 0.550 -0.126 -1.195 1.322 sum -13.222 -0.709 15.688 20.529 Atomic orbital electron populations 1.21939 0.86582 1.06776 1.06848 1.21937 0.92709 0.82174 0.73348 1.90758 1.71774 1.32907 1.49768 1.43657 1.03367 1.11296 1.72410 1.17601 0.84791 0.96870 0.96607 1.21264 0.93439 0.98305 0.96295 1.21183 0.93961 0.98684 1.01135 1.17964 0.77067 0.97165 0.99326 1.91503 1.30157 1.96037 1.94480 1.19707 0.95118 0.98382 1.02766 1.18428 0.83077 0.82334 0.81845 1.90736 1.32749 1.54537 1.67545 1.48035 1.39968 1.34079 1.09955 1.22129 0.97159 0.88606 0.93920 1.21392 0.90509 0.95334 0.92423 1.44263 1.42009 1.37426 1.09473 1.19629 1.40523 0.93240 0.85798 0.90791 1.25934 1.01943 0.94889 1.01457 1.70098 1.52181 0.99553 1.36685 0.85112 0.77177 0.78088 0.79475 1.18819 1.21279 1.22424 1.21187 0.95507 0.88482 0.91331 1.22814 0.90613 0.96029 0.93725 1.21062 0.90304 1.00519 0.97896 0.86235 0.88732 0.86920 0.72659 0.82799 0.81544 0.89662 0.89518 0.90244 0.97972 0.93907 0.99603 0.89489 0.89542 0.88707 0.81911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.87 10.31 71.24 0.73 -0.13 16 2 C 0.51 7.74 7.67 87.66 0.67 8.42 16 3 O -0.57 -14.58 14.84 -3.04 -0.05 -14.62 16 4 N -0.66 -8.51 5.34 -303.57 -1.62 -10.13 16 5 C 0.14 2.74 6.25 38.08 0.24 2.97 16 6 C -0.07 -1.58 8.64 22.43 0.19 -1.39 16 7 C -0.13 -3.10 10.01 22.26 0.22 -2.88 16 8 C 0.11 3.27 7.25 22.68 0.16 3.43 16 9 F -0.14 -5.18 16.40 44.97 0.74 -4.44 16 10 C -0.16 -4.80 4.98 -20.07 -0.10 -4.90 16 11 C 0.55 20.69 7.07 86.74 0.61 21.30 16 12 O -0.57 -24.95 15.90 -3.94 -0.06 -25.01 16 13 N -0.59 -21.48 2.95 -820.72 -2.42 -23.90 16 14 C 0.11 3.81 6.60 86.41 0.57 4.38 16 15 C 0.13 5.52 6.67 86.41 0.58 6.10 16 16 N -0.61 -29.95 2.96 -697.34 -2.07 -32.02 16 17 C -0.26 -13.78 9.60 84.04 0.81 -12.98 16 18 H 0.07 3.74 7.84 -2.91 -0.02 3.71 16 19 C -0.05 -2.52 5.11 84.87 0.43 -2.09 16 20 N -0.94 -53.87 10.81 21.65 0.23 -53.64 16 21 Si 0.97 42.96 29.56 68.60 2.03 44.99 16 22 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 23 H -0.29 -12.43 7.11 99.48 0.71 -11.73 16 24 H -0.30 -13.42 7.11 99.48 0.71 -12.71 16 25 C 0.16 7.62 5.50 86.57 0.48 8.09 16 26 C 0.09 3.23 5.31 86.57 0.46 3.69 16 27 C -0.08 -1.76 7.33 22.66 0.17 -1.59 16 28 H 0.12 0.19 8.14 -2.39 -0.02 0.17 16 29 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.11 0.00 8.14 -2.38 -0.02 -0.02 16 31 H 0.43 2.18 8.82 -92.71 -0.82 1.36 16 32 H 0.15 3.14 6.47 -2.91 -0.02 3.12 16 33 H 0.17 3.10 8.06 -2.91 -0.02 3.07 16 34 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 35 H 0.09 3.11 6.99 -2.39 -0.02 3.09 16 36 H 0.08 3.14 7.93 -2.39 -0.02 3.12 16 37 H 0.00 0.10 8.14 -2.39 -0.02 0.09 16 38 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 39 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 40 H 0.09 4.53 5.84 -2.39 -0.01 4.51 16 41 H 0.09 2.72 8.14 -2.38 -0.02 2.71 16 42 H 0.09 3.00 4.86 -2.39 -0.01 2.99 16 43 H 0.16 3.00 7.03 -2.91 -0.02 2.98 16 Total: -1.00 -77.58 357.53 3.26 -74.31 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 0.25 Total: 12.03 kcal Atomic # 6 Polarization: 26.19 SS G_CDS: 6.23 Total: 32.42 kcal Atomic # 7 Polarization: -113.82 SS G_CDS: -5.87 Total: -119.69 kcal Atomic # 8 Polarization: -39.53 SS G_CDS: -0.11 Total: -39.64 kcal Atomic # 9 Polarization: -5.18 SS G_CDS: 0.74 Total: -4.44 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -77.58 3.26 -74.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073100098.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.513 kcal (2) G-P(sol) polarization free energy of solvation -77.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds