Wall clock time and date at job start Tue Mar 31 2020 18:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21268 * 120.00357 * 2 1 4 4 N 1.34783 * 119.99444 * 180.02562 * 2 1 3 5 5 C 1.39294 * 119.99638 * 175.31524 * 4 2 1 6 6 C 1.38775 * 120.15375 * 33.95880 * 5 4 2 7 7 C 1.38102 * 120.14218 * 179.97438 * 6 5 4 8 8 C 1.38429 * 120.44839 * 359.79614 * 7 6 5 9 9 C 1.38144 * 120.29936 * 0.46514 * 8 7 6 10 10 F 1.35100 * 120.07237 * 179.78729 * 9 8 7 11 11 C 1.39937 * 119.85126 * 359.51004 * 9 8 7 12 12 C 1.47372 * 120.22249 * 180.27719 * 11 9 8 13 13 O 1.21610 * 120.00230 * 90.00010 * 12 11 9 14 14 N 1.34782 * 120.00013 * 270.00459 * 12 11 9 15 15 C 1.46963 * 120.59223 * 359.71329 * 14 12 11 16 16 C 1.53817 * 108.39537 * 124.75995 * 15 14 12 17 17 N 1.46964 * 108.57954 * 49.63869 * 16 15 14 18 18 C 1.36939 * 120.59334 * 124.62329 * 17 16 15 19 19 H 1.08002 * 119.99735 * 211.89662 * 18 17 16 20 20 C 1.38805 * 120.00110 * 31.89666 * 18 17 16 21 21 N 1.31618 * 119.99978 * 10.17173 * 20 18 17 22 22 Si 1.86806 * 120.00192 * 190.17303 * 20 18 17 23 23 H 1.48502 * 109.46915 * 89.99898 * 22 20 18 24 24 H 1.48493 * 109.47365 * 210.00010 * 22 20 18 25 25 H 1.48500 * 109.46799 * 329.99997 * 22 20 18 26 26 C 1.46960 * 118.81304 * 304.64716 * 17 16 15 27 27 C 1.46964 * 120.59508 * 179.97438 * 14 12 11 28 28 H 1.08998 * 109.47451 * 269.99946 * 1 2 3 29 29 H 1.08999 * 109.46864 * 30.00053 * 1 2 3 30 30 H 1.08997 * 109.47584 * 149.99670 * 1 2 3 31 31 H 0.96999 * 120.00059 * 355.31524 * 4 2 1 32 32 H 1.07999 * 119.92750 * 359.97438 * 6 5 4 33 33 H 1.08002 * 119.77384 * 180.02562 * 7 6 5 34 34 H 1.08004 * 119.84702 * 180.25162 * 8 7 6 35 35 H 1.08999 * 109.61327 * 244.54310 * 15 14 12 36 36 H 1.08999 * 109.61050 * 5.05597 * 15 14 12 37 37 H 1.08998 * 109.74628 * 289.84916 * 16 15 14 38 38 H 1.09003 * 109.53143 * 169.29955 * 16 15 14 39 39 H 0.97008 * 119.99876 * 179.97438 * 21 20 18 40 40 H 1.08999 * 109.61085 * 295.48126 * 26 17 16 41 41 H 1.08998 * 109.61318 * 174.96701 * 26 17 16 42 42 H 1.09005 * 109.61050 * 354.94723 * 27 14 12 43 43 H 1.09000 * 109.60848 * 115.28651 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 3.5702 -1.1693 -0.0991 6 6 4.3116 -0.1488 0.4795 7 6 5.6892 -0.1513 0.3821 8 6 6.3432 -1.1709 -0.2879 9 6 5.6231 -2.1931 -0.8753 10 9 6.2659 -3.1836 -1.5318 11 6 4.2268 -2.2033 -0.7838 12 6 3.4508 -3.2930 -1.4022 13 8 3.1933 -4.2949 -0.7627 14 7 3.0266 -3.1793 -2.6764 15 6 3.3251 -1.9718 -3.4591 16 6 4.0390 -2.3966 -4.7537 17 7 3.2644 -3.4752 -5.3832 18 6 2.8326 -3.3592 -6.6776 19 1 1.9050 -3.8219 -6.9809 20 6 3.5871 -2.6471 -7.5997 21 7 4.8050 -2.2550 -7.2911 22 14 2.8739 -2.2452 -9.2789 23 1 2.1704 -0.9388 -9.2180 24 1 3.9703 -2.1709 -10.2775 25 1 1.9139 -3.3064 -9.6757 26 6 2.9611 -4.6803 -4.5987 27 6 2.2524 -4.2581 -3.3062 28 1 -0.3634 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8899 -0.5139 31 1 1.6981 -2.0059 0.0677 32 1 3.8101 0.6491 1.0070 33 1 6.2603 0.6457 0.8350 34 1 7.4211 -1.1654 -0.3547 35 1 2.3969 -1.4550 -3.7028 36 1 3.9731 -1.3124 -2.8817 37 1 5.0419 -2.7544 -4.5207 38 1 4.0998 -1.5458 -5.4323 39 1 5.3324 -1.7576 -7.9357 40 1 3.8872 -5.2007 -4.3547 41 1 2.3100 -5.3377 -5.1749 42 1 2.1918 -5.1091 -2.6276 43 1 1.2485 -3.9016 -3.5364 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073851921.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:20 Heat of formation + Delta-G solvation = -50.173957 kcal Electronic energy + Delta-G solvation = -30137.285096 eV Core-core repulsion = 25905.195350 eV Total energy + Delta-G solvation = -4232.089745 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.86193 -41.00155 -39.59156 -38.14562 -36.79332 -35.02471 -33.91715 -31.84400 -31.07921 -30.73333 -30.09147 -28.80255 -27.01164 -24.43866 -23.32554 -23.27928 -22.69796 -20.76986 -20.70697 -19.06394 -18.31994 -17.54900 -17.52251 -16.44672 -16.26684 -15.95151 -15.78639 -15.47213 -15.33383 -14.94874 -14.78910 -14.51737 -14.12131 -13.70938 -13.58609 -13.41003 -13.29267 -13.25576 -12.98285 -12.72941 -12.54208 -12.33033 -12.13829 -11.83752 -11.68031 -11.30392 -10.89848 -10.77882 -10.65854 -10.55851 -10.25598 -10.13057 -10.11546 -9.91817 -9.68618 -8.85030 -8.62280 -8.40159 -8.37265 -6.70081 -5.87281 -3.38531 0.81505 1.02688 2.26697 2.62608 2.74592 3.21997 3.32004 3.38902 3.40208 3.49639 4.17110 4.38988 4.40512 4.52266 4.75621 4.88434 4.93235 5.05478 5.15711 5.17032 5.26393 5.31865 5.52474 5.71005 5.73188 5.80133 5.84371 5.89239 5.93533 6.07605 6.10338 6.15680 6.21954 6.29836 6.37493 6.71243 6.74746 6.85129 7.03045 7.18234 7.46831 7.67570 7.74439 7.76265 8.30839 8.36098 9.10143 9.70543 10.29192 11.19980 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012195 B = 0.004072 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.460991 B = 6874.994298 C = 7386.154105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.516 3.484 3 O -0.522 6.522 4 N -0.670 5.670 5 C 0.204 3.796 6 C -0.138 4.138 7 C -0.061 4.061 8 C -0.170 4.170 9 C 0.153 3.847 10 F -0.123 7.123 11 C -0.178 4.178 12 C 0.557 3.443 13 O -0.548 6.548 14 N -0.579 5.579 15 C 0.081 3.919 16 C 0.160 3.840 17 N -0.590 5.590 18 C -0.258 4.258 19 H 0.067 0.933 20 C 0.007 3.993 21 N -0.903 5.903 22 Si 0.907 3.093 23 H -0.286 1.286 24 H -0.290 1.290 25 H -0.278 1.278 26 C 0.131 3.869 27 C 0.094 3.906 28 H 0.098 0.902 29 H 0.100 0.900 30 H 0.085 0.915 31 H 0.416 0.584 32 H 0.151 0.849 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.025 0.975 38 H 0.103 0.897 39 H 0.256 0.744 40 H 0.025 0.975 41 H 0.068 0.932 42 H 0.083 0.917 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.240 4.698 16.713 17.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.305 3.695 3 O -0.397 6.397 4 N -0.316 5.316 5 C 0.107 3.893 6 C -0.158 4.158 7 C -0.080 4.080 8 C -0.189 4.189 9 C 0.132 3.868 10 F -0.101 7.101 11 C -0.185 4.185 12 C 0.343 3.657 13 O -0.428 6.428 14 N -0.310 5.310 15 C -0.043 4.043 16 C 0.034 3.966 17 N -0.313 5.313 18 C -0.387 4.387 19 H 0.084 0.916 20 C -0.192 4.192 21 N -0.547 5.547 22 Si 0.737 3.263 23 H -0.213 1.213 24 H -0.216 1.216 25 H -0.203 1.203 26 C 0.004 3.996 27 C -0.030 4.030 28 H 0.117 0.883 29 H 0.119 0.881 30 H 0.104 0.896 31 H 0.253 0.747 32 H 0.168 0.832 33 H 0.157 0.843 34 H 0.160 0.840 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.044 0.956 38 H 0.121 0.879 39 H 0.066 0.934 40 H 0.043 0.957 41 H 0.087 0.913 42 H 0.102 0.898 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.916 4.984 16.828 17.982 hybrid contribution -0.276 -0.378 -1.132 1.225 sum -4.192 4.606 15.696 16.887 Atomic orbital electron populations 1.21901 0.90233 1.05797 1.05189 1.21051 0.91069 0.82726 0.74648 1.90719 1.70366 1.31107 1.47493 1.43550 1.04911 1.10724 1.72368 1.17277 0.82980 0.94141 0.94882 1.21292 0.93734 0.99533 1.01269 1.20989 0.93781 0.96985 0.96219 1.21090 1.01139 0.94822 1.01866 1.17336 0.88251 0.87037 0.94135 1.91583 1.81144 1.59245 1.78175 1.19646 0.93094 1.00012 1.05716 1.17924 0.79749 0.86002 0.82032 1.90772 1.58539 1.30696 1.62754 1.48098 1.52305 1.19706 1.10854 1.22809 1.00709 0.85426 0.95325 1.21272 0.91701 0.93988 0.89674 1.43937 1.63746 1.13079 1.10528 1.19190 1.02184 1.32433 0.84913 0.91556 1.25210 0.94842 1.01326 0.97855 1.69945 1.08402 1.41093 1.35277 0.86223 0.78045 0.78398 0.83662 1.21323 1.21593 1.20340 1.21296 0.97325 0.90382 0.90566 1.22303 0.94510 0.89882 0.96302 0.88326 0.88084 0.89609 0.74706 0.83173 0.84258 0.83987 0.91780 0.91374 0.95648 0.87940 0.93367 0.95698 0.91324 0.89842 0.91656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.17 10.31 36.00 0.37 -0.80 16 2 C 0.52 5.70 7.78 -10.98 -0.09 5.62 16 3 O -0.52 -7.41 14.45 5.57 0.08 -7.33 16 4 N -0.67 -7.79 5.03 -9.69 -0.05 -7.84 16 5 C 0.20 2.79 6.33 -83.49 -0.53 2.26 16 6 C -0.14 -1.70 8.69 -39.43 -0.34 -2.04 16 7 C -0.06 -0.65 10.02 -39.56 -0.40 -1.05 16 8 C -0.17 -2.06 10.00 -39.55 -0.40 -2.45 16 9 C 0.15 2.39 7.17 -38.98 -0.28 2.11 16 10 F -0.12 -2.20 16.83 2.25 0.04 -2.16 16 11 C -0.18 -2.83 3.62 -104.76 -0.38 -3.21 16 12 C 0.56 10.01 5.83 -12.54 -0.07 9.94 16 13 O -0.55 -10.94 16.51 5.27 0.09 -10.85 16 14 N -0.58 -10.61 2.94 -173.52 -0.51 -11.12 16 15 C 0.08 1.55 6.53 -3.36 -0.02 1.53 16 16 C 0.16 3.75 5.47 -3.36 -0.02 3.73 16 17 N -0.59 -14.41 2.96 -171.79 -0.51 -14.92 16 18 C -0.26 -6.81 9.57 -15.06 -0.14 -6.96 16 19 H 0.07 1.71 7.85 -52.49 -0.41 1.30 16 20 C 0.01 0.18 5.06 -17.43 -0.09 0.09 16 21 N -0.90 -25.54 11.02 55.49 0.61 -24.92 16 22 Si 0.91 21.08 29.57 -169.99 -5.03 16.06 16 23 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 C 0.13 2.75 6.67 -3.62 -0.02 2.72 16 27 C 0.09 1.68 6.59 -3.62 -0.02 1.66 16 28 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.42 4.37 8.15 -40.82 -0.33 4.04 16 32 H 0.15 1.81 6.12 -52.49 -0.32 1.49 16 33 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 34 H 0.14 1.38 8.06 -52.48 -0.42 0.96 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.07 1.23 6.23 -51.93 -0.32 0.91 16 37 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.10 2.65 6.03 -51.93 -0.31 2.34 16 39 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 40 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.07 1.35 7.93 -51.93 -0.41 0.94 16 42 H 0.08 1.44 6.99 -51.93 -0.36 1.08 16 43 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 361.02 15.07 5.44 5.44 Total: -1.00 -32.89 361.02 -7.68 -40.57 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -5.42 Total: 3.93 kcal Atomic # 6 Polarization: 15.58 SS G_CDS: -2.43 Total: 13.15 kcal Atomic # 7 Polarization: -58.35 SS G_CDS: -0.46 Total: -58.81 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: 0.17 Total: -18.18 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 0.04 Total: -2.16 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.06 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.89 -7.68 -40.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073851921.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.604 kcal (2) G-P(sol) polarization free energy of solvation -32.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds