Wall clock time and date at job start Tue Mar 31 2020 18:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21268 * 120.00357 * 2 1 4 4 N 1.34783 * 119.99444 * 180.02562 * 2 1 3 5 5 C 1.39294 * 119.99638 * 175.31524 * 4 2 1 6 6 C 1.38775 * 120.15375 * 33.95880 * 5 4 2 7 7 C 1.38102 * 120.14218 * 179.97438 * 6 5 4 8 8 C 1.38429 * 120.44839 * 359.79614 * 7 6 5 9 9 C 1.38144 * 120.29936 * 0.46514 * 8 7 6 10 10 F 1.35100 * 120.07237 * 179.78729 * 9 8 7 11 11 C 1.39937 * 119.85126 * 359.51004 * 9 8 7 12 12 C 1.47372 * 120.22249 * 180.27719 * 11 9 8 13 13 O 1.21610 * 120.00230 * 90.00010 * 12 11 9 14 14 N 1.34782 * 120.00013 * 270.00459 * 12 11 9 15 15 C 1.46963 * 120.59223 * 359.71329 * 14 12 11 16 16 C 1.53817 * 108.39537 * 124.75995 * 15 14 12 17 17 N 1.46964 * 108.57954 * 49.63869 * 16 15 14 18 18 C 1.36939 * 120.59334 * 124.62329 * 17 16 15 19 19 H 1.08002 * 119.99735 * 211.89662 * 18 17 16 20 20 C 1.38805 * 120.00110 * 31.89666 * 18 17 16 21 21 N 1.31618 * 119.99978 * 10.17173 * 20 18 17 22 22 Si 1.86806 * 120.00192 * 190.17303 * 20 18 17 23 23 H 1.48502 * 109.46915 * 89.99898 * 22 20 18 24 24 H 1.48493 * 109.47365 * 210.00010 * 22 20 18 25 25 H 1.48500 * 109.46799 * 329.99997 * 22 20 18 26 26 C 1.46960 * 118.81304 * 304.64716 * 17 16 15 27 27 C 1.46964 * 120.59508 * 179.97438 * 14 12 11 28 28 H 1.08998 * 109.47451 * 269.99946 * 1 2 3 29 29 H 1.08999 * 109.46864 * 30.00053 * 1 2 3 30 30 H 1.08997 * 109.47584 * 149.99670 * 1 2 3 31 31 H 0.96999 * 120.00059 * 355.31524 * 4 2 1 32 32 H 1.07999 * 119.92750 * 359.97438 * 6 5 4 33 33 H 1.08002 * 119.77384 * 180.02562 * 7 6 5 34 34 H 1.08004 * 119.84702 * 180.25162 * 8 7 6 35 35 H 1.08999 * 109.61327 * 244.54310 * 15 14 12 36 36 H 1.08999 * 109.61050 * 5.05597 * 15 14 12 37 37 H 1.08998 * 109.74628 * 289.84916 * 16 15 14 38 38 H 1.09003 * 109.53143 * 169.29955 * 16 15 14 39 39 H 0.97008 * 119.99876 * 179.97438 * 21 20 18 40 40 H 1.08999 * 109.61085 * 295.48126 * 26 17 16 41 41 H 1.08998 * 109.61318 * 174.96701 * 26 17 16 42 42 H 1.09005 * 109.61050 * 354.94723 * 27 14 12 43 43 H 1.09000 * 109.60848 * 115.28651 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 3.5702 -1.1693 -0.0991 6 6 4.3116 -0.1488 0.4795 7 6 5.6892 -0.1513 0.3821 8 6 6.3432 -1.1709 -0.2879 9 6 5.6231 -2.1931 -0.8753 10 9 6.2659 -3.1836 -1.5318 11 6 4.2268 -2.2033 -0.7838 12 6 3.4508 -3.2930 -1.4022 13 8 3.1933 -4.2949 -0.7627 14 7 3.0266 -3.1793 -2.6764 15 6 3.3251 -1.9718 -3.4591 16 6 4.0390 -2.3966 -4.7537 17 7 3.2644 -3.4752 -5.3832 18 6 2.8326 -3.3592 -6.6776 19 1 1.9050 -3.8219 -6.9809 20 6 3.5871 -2.6471 -7.5997 21 7 4.8050 -2.2550 -7.2911 22 14 2.8739 -2.2452 -9.2789 23 1 2.1704 -0.9388 -9.2180 24 1 3.9703 -2.1709 -10.2775 25 1 1.9139 -3.3064 -9.6757 26 6 2.9611 -4.6803 -4.5987 27 6 2.2524 -4.2581 -3.3062 28 1 -0.3634 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8899 -0.5139 31 1 1.6981 -2.0059 0.0677 32 1 3.8101 0.6491 1.0070 33 1 6.2603 0.6457 0.8350 34 1 7.4211 -1.1654 -0.3547 35 1 2.3969 -1.4550 -3.7028 36 1 3.9731 -1.3124 -2.8817 37 1 5.0419 -2.7544 -4.5207 38 1 4.0998 -1.5458 -5.4323 39 1 5.3324 -1.7576 -7.9357 40 1 3.8872 -5.2007 -4.3547 41 1 2.3100 -5.3377 -5.1749 42 1 2.1918 -5.1091 -2.6276 43 1 1.2485 -3.9016 -3.5364 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073851921.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:19 Heat of formation + Delta-G solvation = -71.292495 kcal Electronic energy + Delta-G solvation = -30138.200864 eV Core-core repulsion = 25905.195350 eV Total energy + Delta-G solvation = -4233.005514 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.11922 -42.06859 -40.87564 -39.24365 -38.43716 -35.97491 -35.68131 -33.46632 -32.32130 -31.85546 -31.61603 -29.63979 -28.74858 -25.98774 -24.90258 -24.29742 -24.21894 -22.29478 -21.66667 -20.58121 -19.46516 -19.01549 -18.48854 -17.93569 -17.69835 -17.21250 -16.84112 -16.83105 -16.58144 -16.34143 -16.03591 -15.94326 -15.50969 -15.26851 -15.11912 -14.98293 -14.82922 -14.43161 -13.97645 -13.75736 -13.48617 -13.39252 -13.22873 -13.16953 -12.97547 -12.86764 -12.73363 -12.54950 -12.26426 -12.08199 -12.01444 -11.73666 -11.62176 -11.17608 -11.02311 -10.63603 -9.98345 -9.95162 -9.39040 -8.66879 -7.90207 -5.45686 -0.21550 -0.00419 1.22513 1.42288 1.48622 1.48948 1.58162 1.85293 1.86876 2.45225 2.48940 3.09925 3.21012 3.26358 3.52663 3.65548 3.81425 3.89512 4.10754 4.15692 4.20654 4.21793 4.30458 4.45209 4.46012 4.53113 4.61605 4.64803 4.73426 4.74641 4.91036 4.99502 5.01787 5.05813 5.15808 5.19360 5.26955 5.40779 5.54387 5.60798 5.75310 6.16070 6.24657 6.34930 6.86114 6.91033 7.07969 7.73484 8.29319 9.15018 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012195 B = 0.004072 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.460991 B = 6874.994298 C = 7386.154105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.513 3.487 3 O -0.556 6.556 4 N -0.669 5.669 5 C 0.200 3.800 6 C -0.140 4.140 7 C -0.043 4.043 8 C -0.163 4.163 9 C 0.122 3.878 10 F -0.146 7.146 11 C -0.204 4.204 12 C 0.563 3.437 13 O -0.570 6.570 14 N -0.583 5.583 15 C 0.105 3.895 16 C 0.170 3.830 17 N -0.606 5.606 18 C -0.266 4.266 19 H 0.074 0.926 20 C -0.045 4.045 21 N -0.937 5.937 22 Si 0.973 3.027 23 H -0.282 1.282 24 H -0.297 1.297 25 H -0.267 1.267 26 C 0.130 3.870 27 C 0.103 3.897 28 H 0.124 0.876 29 H 0.104 0.896 30 H 0.099 0.901 31 H 0.421 0.579 32 H 0.157 0.843 33 H 0.181 0.819 34 H 0.167 0.833 35 H 0.073 0.927 36 H 0.077 0.923 37 H -0.008 1.008 38 H 0.076 0.924 39 H 0.252 0.748 40 H 0.004 0.996 41 H 0.081 0.919 42 H 0.092 0.908 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.710 5.876 17.895 19.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.305 3.695 3 O -0.433 6.433 4 N -0.314 5.314 5 C 0.103 3.897 6 C -0.160 4.160 7 C -0.061 4.061 8 C -0.182 4.182 9 C 0.102 3.898 10 F -0.125 7.125 11 C -0.210 4.210 12 C 0.351 3.649 13 O -0.451 6.451 14 N -0.313 5.313 15 C -0.020 4.020 16 C 0.043 3.957 17 N -0.329 5.329 18 C -0.396 4.396 19 H 0.091 0.909 20 C -0.241 4.241 21 N -0.582 5.582 22 Si 0.801 3.199 23 H -0.208 1.208 24 H -0.224 1.224 25 H -0.192 1.192 26 C 0.004 3.996 27 C -0.020 4.020 28 H 0.142 0.858 29 H 0.122 0.878 30 H 0.118 0.882 31 H 0.258 0.742 32 H 0.174 0.826 33 H 0.198 0.802 34 H 0.185 0.815 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.010 0.990 38 H 0.094 0.906 39 H 0.061 0.939 40 H 0.022 0.978 41 H 0.099 0.901 42 H 0.111 0.889 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.423 6.135 18.036 19.808 hybrid contribution 0.220 -0.759 -1.420 1.625 sum -5.203 5.377 16.616 18.223 Atomic orbital electron populations 1.21962 0.86714 1.06611 1.07062 1.21851 0.92613 0.81811 0.73271 1.90697 1.71378 1.32127 1.49145 1.43673 1.04239 1.11362 1.72112 1.17452 0.84099 0.93753 0.94418 1.21523 0.94530 0.99053 1.00919 1.21465 0.93375 0.96933 0.94337 1.21411 1.02340 0.93747 1.00717 1.17801 0.88572 0.87872 0.95575 1.91521 1.81538 1.60455 1.78970 1.19561 0.93211 1.00605 1.07635 1.18201 0.78967 0.86165 0.81575 1.90746 1.59311 1.31829 1.63205 1.48102 1.52600 1.19481 1.11143 1.22419 1.00613 0.85737 0.93198 1.20993 0.90768 0.92798 0.91099 1.44176 1.63695 1.14428 1.10623 1.19550 1.02328 1.31883 0.85793 0.90854 1.25973 0.95131 1.01661 1.01314 1.70122 1.09753 1.42129 1.36229 0.85191 0.77129 0.78388 0.79235 1.20842 1.22399 1.19154 1.21390 0.96953 0.89408 0.91848 1.22185 0.94793 0.90307 0.94701 0.85813 0.87767 0.88202 0.74173 0.82594 0.80157 0.81539 0.90843 0.90423 0.98984 0.90556 0.93897 0.97791 0.90075 0.88949 0.89706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 10.31 71.23 0.73 -1.05 16 2 C 0.51 10.39 7.78 87.65 0.68 11.07 16 3 O -0.56 -14.93 14.45 -2.99 -0.04 -14.97 16 4 N -0.67 -14.58 5.03 -302.96 -1.52 -16.10 16 5 C 0.20 5.25 6.33 38.59 0.24 5.49 16 6 C -0.14 -3.17 8.69 22.37 0.19 -2.97 16 7 C -0.04 -0.79 10.02 22.28 0.22 -0.57 16 8 C -0.16 -3.66 10.00 22.29 0.22 -3.44 16 9 C 0.12 3.80 7.17 22.66 0.16 3.97 16 10 F -0.15 -5.40 16.83 44.97 0.76 -4.65 16 11 C -0.20 -6.42 3.62 -19.95 -0.07 -6.49 16 12 C 0.56 20.21 5.83 86.65 0.51 20.72 16 13 O -0.57 -22.72 16.51 -4.06 -0.07 -22.79 16 14 N -0.58 -21.21 2.94 -821.15 -2.42 -23.63 16 15 C 0.10 3.99 6.53 86.57 0.57 4.55 16 16 C 0.17 8.22 5.47 86.57 0.47 8.70 16 17 N -0.61 -30.01 2.96 -697.43 -2.06 -32.08 16 18 C -0.27 -14.09 9.57 84.03 0.80 -13.28 16 19 H 0.07 3.72 7.85 -2.91 -0.02 3.70 16 20 C -0.05 -2.45 5.06 84.86 0.43 -2.02 16 21 N -0.94 -54.44 11.02 21.65 0.24 -54.20 16 22 Si 0.97 43.49 29.57 68.60 2.03 45.52 16 23 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 24 H -0.30 -13.56 7.11 99.48 0.71 -12.85 16 25 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 26 C 0.13 5.48 6.67 86.40 0.58 6.05 16 27 C 0.10 3.63 6.59 86.40 0.57 4.20 16 28 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.42 8.25 8.15 -92.71 -0.76 7.49 16 32 H 0.16 3.42 6.12 -2.91 -0.02 3.40 16 33 H 0.18 1.85 8.06 -2.91 -0.02 1.83 16 34 H 0.17 2.85 8.06 -2.91 -0.02 2.82 16 35 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 36 H 0.08 2.83 6.23 -2.39 -0.01 2.81 16 37 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 38 H 0.08 4.10 6.03 -2.39 -0.01 4.08 16 39 H 0.25 14.20 8.31 -92.70 -0.77 13.43 16 40 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 41 H 0.08 3.15 7.93 -2.39 -0.02 3.13 16 42 H 0.09 3.11 6.99 -2.38 -0.02 3.10 16 43 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 Total: -1.00 -73.09 361.02 3.53 -69.56 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: 0.31 Total: 18.39 kcal Atomic # 6 Polarization: 28.62 SS G_CDS: 6.32 Total: 34.93 kcal Atomic # 7 Polarization: -120.24 SS G_CDS: -5.76 Total: -126.00 kcal Atomic # 8 Polarization: -37.65 SS G_CDS: -0.11 Total: -37.76 kcal Atomic # 9 Polarization: -5.40 SS G_CDS: 0.76 Total: -4.65 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -73.09 3.53 -69.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073851921.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.732 kcal (2) G-P(sol) polarization free energy of solvation -73.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds