Wall clock time and date at job start Tue Mar 31 2020 18:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99537 * 2 1 4 4 C 1.50697 * 109.46949 * 269.99553 * 3 2 1 5 5 H 1.08004 * 120.00186 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00081 * 180.02562 * 4 3 2 7 7 N 1.31519 * 120.00096 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 120.00103 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.46956 * 89.99765 * 8 6 4 10 10 H 1.48497 * 109.47226 * 210.00189 * 8 6 4 11 11 H 1.48501 * 109.47027 * 329.99834 * 8 6 4 12 12 C 1.34777 * 120.00264 * 179.97438 * 2 1 3 13 13 O 1.21283 * 119.99750 * 180.02562 * 12 2 1 14 14 C 1.50702 * 119.99928 * 0.28128 * 12 2 1 15 15 N 1.46491 * 109.46957 * 179.72354 * 14 12 2 16 16 C 1.34938 * 119.50971 * 89.99898 * 15 14 12 17 17 O 1.21797 * 120.38070 * 359.97438 * 16 15 14 18 18 C 1.41147 * 119.22947 * 179.97438 * 16 15 14 19 19 C 1.38927 * 119.15677 * 359.97438 * 18 16 15 20 20 N 1.33541 * 107.24212 * 179.97438 * 19 18 16 21 21 C 1.30873 * 109.80847 * 0.02562 * 20 19 18 22 22 N 1.34736 * 109.70904 * 359.97438 * 21 20 19 23 23 C 1.46499 * 126.50451 * 179.97438 * 22 21 20 24 24 N 1.38544 * 118.85995 * 0.02562 * 19 18 16 25 25 C 1.46506 * 119.95065 * 179.97438 * 24 19 18 26 26 C 1.34417 * 119.50183 * 269.72343 * 15 14 12 27 27 O 1.21596 * 119.16937 * 0.02562 * 26 15 14 28 28 H 1.08998 * 109.46921 * 269.99744 * 1 2 3 29 29 H 1.08994 * 109.46996 * 30.00327 * 1 2 3 30 30 H 1.09001 * 109.46578 * 150.00190 * 1 2 3 31 31 H 1.09001 * 109.47567 * 29.99407 * 3 2 1 32 32 H 1.09005 * 109.47076 * 149.99913 * 3 2 1 33 33 H 0.96991 * 119.99957 * 180.02562 * 7 6 4 34 34 H 1.09004 * 109.46965 * 299.72211 * 14 12 2 35 35 H 1.08994 * 109.46990 * 59.72065 * 14 12 2 36 36 H 1.07994 * 125.14636 * 180.02562 * 21 20 19 37 37 H 1.08994 * 109.47158 * 270.04217 * 23 22 21 38 38 H 1.08997 * 109.46777 * 30.04558 * 23 22 21 39 39 H 1.09005 * 109.46723 * 150.04212 * 23 22 21 40 40 H 1.08993 * 109.46914 * 90.00180 * 25 24 19 41 41 H 1.09000 * 109.47136 * 210.00092 * 25 24 19 42 42 H 1.08997 * 109.46688 * 329.99566 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1268 2.8775 -1.6728 7 7 3.5549 3.6172 -0.6732 8 14 3.4376 3.4170 -3.4340 9 1 2.3077 4.2605 -3.9000 10 1 4.6982 4.1993 -3.4970 11 1 3.5539 2.2200 -4.3052 12 6 2.1390 -1.1672 0.0005 13 8 3.3518 -1.1671 0.0010 14 6 1.3855 -2.4723 -0.0053 15 7 2.3376 -3.5857 -0.0102 16 6 2.7695 -4.0960 1.1620 17 8 2.3727 -3.6360 2.2176 18 6 3.6863 -5.1691 1.1504 19 6 4.1216 -5.6743 -0.0684 20 7 4.9718 -6.6695 0.1966 21 6 5.0931 -6.8162 1.4914 22 7 4.3196 -5.9134 2.1255 23 6 4.1771 -5.7526 3.5746 24 7 3.6411 -5.1070 -1.2374 25 6 4.0846 -5.6208 -2.5358 26 6 2.7635 -4.0873 -1.1822 27 8 2.3493 -3.6051 -2.2188 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3632 -0.8900 -0.5138 31 1 1.6083 2.0285 0.5137 32 1 3.1499 1.1385 0.5139 33 1 4.0317 4.4431 -0.8505 34 1 0.7588 -2.5340 0.8844 35 1 0.7590 -2.5261 -0.8955 36 1 5.7191 -7.5494 1.9780 37 1 3.3608 -6.3807 3.9313 38 1 5.1042 -6.0480 4.0658 39 1 3.9602 -4.7095 3.8049 40 1 3.4132 -6.4156 -2.8605 41 1 4.0737 -4.8140 -3.2687 42 1 5.0967 -6.0147 -2.4441 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078761469.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:43 Heat of formation + Delta-G solvation = 9.810295 kcal Electronic energy + Delta-G solvation = -29862.830852 eV Core-core repulsion = 25653.262181 eV Total energy + Delta-G solvation = -4209.568671 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.19175 -41.28134 -39.21892 -38.58946 -36.44854 -35.28351 -34.70021 -34.04795 -32.60160 -30.99696 -28.88272 -27.58213 -27.42502 -26.81627 -25.64645 -24.13170 -23.48153 -22.45137 -21.38961 -19.63076 -19.07443 -18.32820 -17.50037 -17.16997 -16.53034 -16.36351 -16.17205 -15.80393 -15.62489 -15.50364 -14.88187 -14.64857 -14.62719 -14.54227 -14.01656 -13.82654 -13.58095 -13.17851 -13.05985 -12.75744 -12.63925 -12.42861 -12.15603 -11.83797 -11.68906 -11.23134 -11.13086 -10.93252 -10.85645 -10.63199 -10.54250 -10.26473 -10.18218 -10.11149 -9.91140 -9.58540 -8.83162 -8.39541 -8.29021 -7.65092 -6.00417 -4.04753 0.73498 1.53359 1.98698 2.30471 2.38381 2.76311 3.33147 3.34738 3.39936 3.40646 3.47724 3.81254 3.99393 4.24851 4.27785 4.45775 4.49246 4.79920 5.00979 5.05608 5.13316 5.18374 5.27148 5.30175 5.33144 5.34373 5.39851 5.57667 5.62197 5.68763 5.89050 5.94888 6.23004 6.30098 6.56625 7.03849 7.11882 7.33383 7.44615 7.46019 7.54205 7.90509 7.96369 8.26855 8.37048 8.91040 9.05955 9.60040 11.07786 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.015455 B = 0.003487 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.236582 B = 8028.916806 C = 8625.404335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.597 5.597 3 C 0.247 3.753 4 C -0.526 4.526 5 H 0.059 0.941 6 C 0.061 3.939 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.273 1.273 12 C 0.498 3.502 13 O -0.533 6.533 14 C 0.095 3.905 15 N -0.530 5.530 16 C 0.602 3.398 17 O -0.513 6.513 18 C -0.147 4.147 19 C 0.319 3.681 20 N -0.501 5.501 21 C 0.259 3.741 22 N -0.413 5.413 23 C 0.070 3.930 24 N -0.511 5.511 25 C 0.092 3.908 26 C 0.714 3.286 27 O -0.526 6.526 28 H 0.048 0.952 29 H 0.078 0.922 30 H 0.057 0.943 31 H 0.035 0.965 32 H 0.043 0.957 33 H 0.263 0.737 34 H 0.124 0.876 35 H 0.127 0.873 36 H 0.229 0.771 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.070 0.930 41 H 0.093 0.907 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.950 -24.258 6.757 25.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.330 5.330 3 C 0.128 3.872 4 C -0.564 4.564 5 H 0.077 0.923 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.198 1.198 12 C 0.283 3.717 13 O -0.410 6.410 14 C -0.030 4.030 15 N -0.272 5.272 16 C 0.396 3.604 17 O -0.389 6.389 18 C -0.264 4.264 19 C 0.087 3.913 20 N -0.225 5.225 21 C -0.024 4.024 22 N -0.094 5.094 23 C -0.071 4.071 24 N -0.239 5.239 25 C -0.049 4.049 26 C 0.416 3.584 27 O -0.397 6.397 28 H 0.067 0.933 29 H 0.097 0.903 30 H 0.076 0.924 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.142 0.858 35 H 0.144 0.856 36 H 0.245 0.755 37 H 0.104 0.896 38 H 0.114 0.886 39 H 0.120 0.880 40 H 0.089 0.911 41 H 0.112 0.888 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.335 -23.903 6.314 24.759 hybrid contribution -0.069 0.806 -0.307 0.866 sum -1.404 -23.097 6.006 23.906 Atomic orbital electron populations 1.21716 0.81151 1.02891 1.00707 1.48083 1.06315 1.07454 1.71109 1.19313 0.92549 0.77734 0.97610 1.21457 1.36437 1.06249 0.92294 0.92302 1.24936 0.95314 0.96389 0.97478 1.69937 1.38493 1.14346 1.30735 0.86489 0.77635 0.78609 0.84696 1.20590 1.21118 1.19792 1.20236 0.88356 0.85051 0.78087 1.90686 1.13616 1.86826 1.49858 1.21719 0.90796 0.83734 1.06707 1.45363 1.43531 1.32813 1.05533 1.15336 0.80160 0.81308 0.83637 1.90857 1.57390 1.61518 1.29128 1.18775 1.12254 1.06252 0.89155 1.18091 0.94935 0.93516 0.84722 1.69626 1.20064 1.18610 1.14235 1.25245 0.95894 0.94467 0.86775 1.44643 1.32304 1.24851 1.07643 1.22317 1.04015 1.06189 0.74621 1.43829 1.42036 1.32033 1.06024 1.21939 1.01023 1.00484 0.81489 1.15363 0.79525 0.79315 0.84158 1.91046 1.58078 1.59607 1.30966 0.93319 0.90309 0.92439 0.94741 0.93898 0.92760 0.85848 0.85567 0.75524 0.89622 0.88586 0.87986 0.91127 0.88800 0.89183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.28 10.25 59.85 0.61 1.90 16 2 N -0.60 -13.37 2.86 -182.95 -0.52 -13.89 16 3 C 0.25 6.73 5.16 -5.20 -0.03 6.71 16 4 C -0.53 -15.50 9.39 -34.44 -0.32 -15.83 16 5 H 0.06 1.75 7.81 -52.48 -0.41 1.34 16 6 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 7 N -0.90 -27.34 13.29 55.43 0.74 -26.60 16 8 Si 0.90 22.63 29.54 -169.99 -5.02 17.60 16 9 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 11 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 12 C 0.50 11.30 7.74 -10.98 -0.08 11.22 16 13 O -0.53 -14.56 16.01 5.55 0.09 -14.47 16 14 C 0.10 1.63 4.10 -5.20 -0.02 1.61 16 15 N -0.53 -9.35 2.05 -125.46 -0.26 -9.61 16 16 C 0.60 10.20 7.43 -15.08 -0.11 10.08 16 17 O -0.51 -9.25 15.56 5.10 0.08 -9.17 16 18 C -0.15 -2.11 6.90 -83.70 -0.58 -2.69 16 19 C 0.32 4.46 7.63 -154.56 -1.18 3.28 16 20 N -0.50 -5.73 11.16 -13.39 -0.15 -5.88 16 21 C 0.26 2.03 12.50 -90.34 -1.13 0.90 16 22 N -0.41 -4.07 3.18 -123.14 -0.39 -4.46 16 23 C 0.07 0.44 10.97 59.85 0.66 1.09 16 24 N -0.51 -7.59 3.06 -128.31 -0.39 -7.98 16 25 C 0.09 1.04 10.39 59.85 0.62 1.66 16 26 C 0.71 12.57 8.11 -87.35 -0.71 11.86 16 27 O -0.53 -10.28 15.26 5.28 0.08 -10.20 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.08 1.30 8.07 -51.93 -0.42 0.88 16 30 H 0.06 0.75 6.43 -51.93 -0.33 0.41 16 31 H 0.03 0.94 8.07 -51.93 -0.42 0.52 16 32 H 0.04 1.32 7.42 -51.93 -0.39 0.94 16 33 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 34 H 0.12 1.79 7.37 -51.93 -0.38 1.40 16 35 H 0.13 1.93 6.59 -51.93 -0.34 1.59 16 36 H 0.23 0.48 8.06 -52.49 -0.42 0.06 16 37 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.10 0.90 7.27 -51.93 -0.38 0.53 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.09 1.13 7.39 -51.93 -0.38 0.75 16 42 H 0.09 0.88 8.01 -51.93 -0.42 0.47 16 LS Contribution 362.66 15.07 5.47 5.47 Total: -1.00 -41.19 362.66 -7.77 -48.96 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: -5.12 Total: -3.25 kcal Atomic # 6 Polarization: 35.86 SS G_CDS: -2.37 Total: 33.49 kcal Atomic # 7 Polarization: -67.45 SS G_CDS: -0.98 Total: -68.42 kcal Atomic # 8 Polarization: -34.09 SS G_CDS: 0.25 Total: -33.84 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -41.19 -7.77 -48.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078761469.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.766 kcal (2) G-P(sol) polarization free energy of solvation -41.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds