Wall clock time and date at job start Tue Mar 31 2020 18:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99537 * 2 1 4 4 C 1.50697 * 109.46949 * 269.99553 * 3 2 1 5 5 H 1.08004 * 120.00186 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00081 * 180.02562 * 4 3 2 7 7 N 1.31519 * 120.00096 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 120.00103 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.46956 * 89.99765 * 8 6 4 10 10 H 1.48497 * 109.47226 * 210.00189 * 8 6 4 11 11 H 1.48501 * 109.47027 * 329.99834 * 8 6 4 12 12 C 1.34777 * 120.00264 * 179.97438 * 2 1 3 13 13 O 1.21283 * 119.99750 * 180.02562 * 12 2 1 14 14 C 1.50702 * 119.99928 * 0.28128 * 12 2 1 15 15 N 1.46491 * 109.46957 * 179.72354 * 14 12 2 16 16 C 1.34938 * 119.50971 * 89.99898 * 15 14 12 17 17 O 1.21797 * 120.38070 * 359.97438 * 16 15 14 18 18 C 1.41147 * 119.22947 * 179.97438 * 16 15 14 19 19 C 1.38927 * 119.15677 * 359.97438 * 18 16 15 20 20 N 1.33541 * 107.24212 * 179.97438 * 19 18 16 21 21 C 1.30873 * 109.80847 * 0.02562 * 20 19 18 22 22 N 1.34736 * 109.70904 * 359.97438 * 21 20 19 23 23 C 1.46499 * 126.50451 * 179.97438 * 22 21 20 24 24 N 1.38544 * 118.85995 * 0.02562 * 19 18 16 25 25 C 1.46506 * 119.95065 * 179.97438 * 24 19 18 26 26 C 1.34417 * 119.50183 * 269.72343 * 15 14 12 27 27 O 1.21596 * 119.16937 * 0.02562 * 26 15 14 28 28 H 1.08998 * 109.46921 * 269.99744 * 1 2 3 29 29 H 1.08994 * 109.46996 * 30.00327 * 1 2 3 30 30 H 1.09001 * 109.46578 * 150.00190 * 1 2 3 31 31 H 1.09001 * 109.47567 * 29.99407 * 3 2 1 32 32 H 1.09005 * 109.47076 * 149.99913 * 3 2 1 33 33 H 0.96991 * 119.99957 * 180.02562 * 7 6 4 34 34 H 1.09004 * 109.46965 * 299.72211 * 14 12 2 35 35 H 1.08994 * 109.46990 * 59.72065 * 14 12 2 36 36 H 1.07994 * 125.14636 * 180.02562 * 21 20 19 37 37 H 1.08994 * 109.47158 * 270.04217 * 23 22 21 38 38 H 1.08997 * 109.46777 * 30.04558 * 23 22 21 39 39 H 1.09005 * 109.46723 * 150.04212 * 23 22 21 40 40 H 1.08993 * 109.46914 * 90.00180 * 25 24 19 41 41 H 1.09000 * 109.47136 * 210.00092 * 25 24 19 42 42 H 1.08997 * 109.46688 * 329.99566 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1268 2.8775 -1.6728 7 7 3.5549 3.6172 -0.6732 8 14 3.4376 3.4170 -3.4340 9 1 2.3077 4.2605 -3.9000 10 1 4.6982 4.1993 -3.4970 11 1 3.5539 2.2200 -4.3052 12 6 2.1390 -1.1672 0.0005 13 8 3.3518 -1.1671 0.0010 14 6 1.3855 -2.4723 -0.0053 15 7 2.3376 -3.5857 -0.0102 16 6 2.7695 -4.0960 1.1620 17 8 2.3727 -3.6360 2.2176 18 6 3.6863 -5.1691 1.1504 19 6 4.1216 -5.6743 -0.0684 20 7 4.9718 -6.6695 0.1966 21 6 5.0931 -6.8162 1.4914 22 7 4.3196 -5.9134 2.1255 23 6 4.1771 -5.7526 3.5746 24 7 3.6411 -5.1070 -1.2374 25 6 4.0846 -5.6208 -2.5358 26 6 2.7635 -4.0873 -1.1822 27 8 2.3493 -3.6051 -2.2188 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3632 -0.8900 -0.5138 31 1 1.6083 2.0285 0.5137 32 1 3.1499 1.1385 0.5139 33 1 4.0317 4.4431 -0.8505 34 1 0.7588 -2.5340 0.8844 35 1 0.7590 -2.5261 -0.8955 36 1 5.7191 -7.5494 1.9780 37 1 3.3608 -6.3807 3.9313 38 1 5.1042 -6.0480 4.0658 39 1 3.9602 -4.7095 3.8049 40 1 3.4132 -6.4156 -2.8605 41 1 4.0737 -4.8140 -3.2687 42 1 5.0967 -6.0147 -2.4441 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078761469.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:43 Heat of formation + Delta-G solvation = -19.089399 kcal Electronic energy + Delta-G solvation = -29864.084037 eV Core-core repulsion = 25653.262181 eV Total energy + Delta-G solvation = -4210.821856 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.19419 -42.41269 -40.68585 -40.11921 -37.59991 -36.82748 -36.36856 -34.86295 -34.77910 -32.16422 -30.48868 -29.00337 -28.24565 -27.90761 -27.29351 -25.47873 -24.78411 -24.13723 -22.31388 -20.70541 -20.58668 -19.49238 -18.84699 -18.71724 -18.40281 -17.71178 -17.34236 -17.01954 -16.90846 -16.62437 -16.58901 -16.29403 -15.95951 -15.63728 -15.37186 -14.97685 -14.60791 -14.49779 -14.33024 -13.86760 -13.84102 -13.68893 -13.52714 -13.33585 -13.26256 -13.16417 -12.83595 -12.58505 -12.40221 -12.25687 -11.84567 -11.76633 -11.75795 -11.67336 -11.31780 -10.83414 -10.67618 -10.52109 -9.53087 -9.29764 -8.26507 -6.41279 -0.25267 0.42849 0.73781 1.33045 1.36623 1.45189 1.47690 1.55502 1.62546 1.68537 2.10988 2.32829 2.44801 2.90538 3.02930 3.31850 3.51685 3.65639 3.81387 3.92875 3.99523 4.04363 4.15544 4.39466 4.39963 4.44131 4.49572 4.67312 4.69186 4.73639 4.77907 4.90689 4.93095 4.96061 5.15563 5.21008 5.49447 5.75882 5.85566 5.98492 6.00995 6.20515 6.40461 6.56111 6.67855 6.70684 7.17954 7.33143 8.80989 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.015455 B = 0.003487 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.236582 B = 8028.916806 C = 8625.404335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.603 5.603 3 C 0.262 3.738 4 C -0.545 4.545 5 H 0.051 0.949 6 C 0.009 3.991 7 N -0.927 5.927 8 Si 0.968 3.032 9 H -0.258 1.258 10 H -0.278 1.278 11 H -0.277 1.277 12 C 0.487 3.513 13 O -0.593 6.593 14 C 0.107 3.893 15 N -0.538 5.538 16 C 0.593 3.407 17 O -0.538 6.538 18 C -0.183 4.183 19 C 0.312 3.688 20 N -0.519 5.519 21 C 0.295 3.705 22 N -0.414 5.414 23 C 0.066 3.934 24 N -0.511 5.511 25 C 0.088 3.912 26 C 0.707 3.293 27 O -0.557 6.557 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.094 0.906 31 H 0.031 0.969 32 H -0.006 1.006 33 H 0.268 0.732 34 H 0.153 0.847 35 H 0.148 0.852 36 H 0.291 0.709 37 H 0.104 0.896 38 H 0.141 0.859 39 H 0.069 0.931 40 H 0.093 0.907 41 H 0.080 0.920 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.953 -26.833 6.838 27.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.334 5.334 3 C 0.141 3.859 4 C -0.584 4.584 5 H 0.069 0.931 6 C -0.190 4.190 7 N -0.567 5.567 8 Si 0.792 3.208 9 H -0.183 1.183 10 H -0.203 1.203 11 H -0.202 1.202 12 C 0.274 3.726 13 O -0.474 6.474 14 C -0.017 4.017 15 N -0.280 5.280 16 C 0.389 3.611 17 O -0.416 6.416 18 C -0.300 4.300 19 C 0.080 3.920 20 N -0.243 5.243 21 C 0.012 3.988 22 N -0.095 5.095 23 C -0.074 4.074 24 N -0.238 5.238 25 C -0.052 4.052 26 C 0.409 3.591 27 O -0.431 6.431 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.113 0.887 31 H 0.049 0.951 32 H 0.012 0.988 33 H 0.077 0.923 34 H 0.171 0.829 35 H 0.166 0.834 36 H 0.306 0.694 37 H 0.122 0.878 38 H 0.159 0.841 39 H 0.088 0.912 40 H 0.112 0.888 41 H 0.099 0.901 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.381 -26.512 6.427 27.315 hybrid contribution 0.014 1.503 -0.224 1.520 sum -1.367 -25.009 6.203 25.803 Atomic orbital electron populations 1.22084 0.77166 1.04589 1.03214 1.48118 1.08816 1.05925 1.70577 1.18784 0.91018 0.79982 0.96154 1.21684 1.37153 1.06655 0.92893 0.93110 1.25861 0.94711 0.96318 1.02139 1.70049 1.38819 1.14789 1.33028 0.85409 0.78343 0.78127 0.78903 1.18296 1.20341 1.20227 1.21213 0.88065 0.86717 0.76588 1.90639 1.16398 1.87892 1.52464 1.21697 0.90297 0.80703 1.09023 1.45496 1.43772 1.32684 1.06072 1.15749 0.80438 0.81839 0.83054 1.90824 1.58604 1.62624 1.29532 1.18719 1.13358 1.06939 0.90948 1.18322 0.95413 0.94142 0.84129 1.69704 1.20078 1.18213 1.16336 1.26571 0.93462 0.93078 0.85662 1.44968 1.31773 1.24341 1.08381 1.22583 1.07185 1.04734 0.72860 1.43936 1.41055 1.31264 1.07586 1.22155 1.02494 1.00554 0.79950 1.15553 0.79944 0.79840 0.83751 1.91003 1.59499 1.60889 1.31729 0.90335 0.90682 0.88712 0.95091 0.98794 0.92290 0.82928 0.83425 0.69397 0.87803 0.84090 0.91239 0.88819 0.90077 0.87552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.23 10.25 127.77 1.31 3.53 16 2 N -0.60 -27.74 2.86 -851.12 -2.43 -30.18 16 3 C 0.26 14.99 5.16 85.63 0.44 15.43 16 4 C -0.55 -33.23 9.39 25.60 0.24 -32.99 16 5 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 6 C 0.01 0.53 5.46 84.66 0.46 0.99 16 7 N -0.93 -57.95 13.29 21.45 0.28 -57.67 16 8 Si 0.97 46.97 29.54 68.60 2.03 48.99 16 9 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 10 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 11 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 12 C 0.49 22.90 7.74 87.66 0.68 23.58 16 13 O -0.59 -34.36 16.01 -3.04 -0.05 -34.41 16 14 C 0.11 3.70 4.10 85.64 0.35 4.05 16 15 N -0.54 -19.44 2.05 -787.39 -1.61 -21.05 16 16 C 0.59 20.54 7.43 84.93 0.63 21.17 16 17 O -0.54 -19.92 15.56 -4.66 -0.07 -19.99 16 18 C -0.18 -5.15 6.90 39.04 0.27 -4.88 16 19 C 0.31 8.46 7.63 132.83 1.01 9.47 16 20 N -0.52 -10.49 11.16 -196.27 -2.19 -12.68 16 21 C 0.29 3.41 12.50 180.25 2.25 5.66 16 22 N -0.41 -7.16 3.18 -543.51 -1.73 -8.88 16 23 C 0.07 0.66 10.97 127.77 1.40 2.06 16 24 N -0.51 -15.21 3.06 -678.19 -2.07 -17.29 16 25 C 0.09 1.96 10.39 127.77 1.33 3.28 16 26 C 0.71 25.50 8.11 179.21 1.45 26.95 16 27 O -0.56 -22.41 15.26 -4.02 -0.06 -22.47 16 28 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.07 2.42 8.07 -2.39 -0.02 2.40 16 30 H 0.09 2.26 6.43 -2.39 -0.02 2.24 16 31 H 0.03 1.76 8.07 -2.39 -0.02 1.74 16 32 H -0.01 -0.40 7.42 -2.38 -0.02 -0.42 16 33 H 0.27 15.63 8.31 -92.72 -0.77 14.86 16 34 H 0.15 4.29 7.37 -2.38 -0.02 4.27 16 35 H 0.15 4.40 6.59 -2.39 -0.02 4.39 16 36 H 0.29 -0.75 8.06 -2.91 -0.02 -0.77 16 37 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.14 0.11 8.14 -2.39 -0.02 0.09 16 39 H 0.07 1.21 7.27 -2.38 -0.02 1.20 16 40 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.08 2.00 7.39 -2.39 -0.02 1.98 16 42 H 0.11 1.97 8.01 -2.39 -0.02 1.95 16 Total: -1.00 -97.14 362.66 5.00 -92.15 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: 1.07 Total: 5.14 kcal Atomic # 6 Polarization: 66.49 SS G_CDS: 11.83 Total: 78.32 kcal Atomic # 7 Polarization: -137.99 SS G_CDS: -9.75 Total: -147.74 kcal Atomic # 8 Polarization: -76.68 SS G_CDS: -0.18 Total: -76.87 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 2.03 Total: 48.99 kcal Total: -97.14 5.00 -92.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078761469.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.060 kcal (2) G-P(sol) polarization free energy of solvation -97.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds