Wall clock time and date at job start Tue Mar 31 2020 18:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47152 * 2 1 4 4 C 1.50702 * 109.46902 * 120.00378 * 2 1 3 5 5 H 1.07988 * 120.00409 * 119.99827 * 4 2 1 6 6 C 1.37887 * 119.99512 * 299.99737 * 4 2 1 7 7 N 1.31515 * 120.00183 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99518 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47111 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46761 * 120.00016 * 8 6 4 11 11 H 1.48499 * 109.46859 * 239.99785 * 8 6 4 12 12 N 1.46500 * 109.46893 * 239.99797 * 2 1 3 13 13 C 1.46494 * 120.00340 * 300.00148 * 12 2 1 14 14 C 1.34778 * 119.99491 * 120.00735 * 12 2 1 15 15 O 1.21589 * 120.00478 * 359.97438 * 14 12 2 16 16 N 1.34777 * 119.99782 * 180.02562 * 14 12 2 17 17 C 1.40247 * 120.00140 * 185.61942 * 16 14 12 18 18 C 1.38809 * 120.00413 * 24.79029 * 17 16 14 19 19 C 1.38053 * 120.00211 * 179.97438 * 18 17 16 20 20 C 1.38894 * 120.07230 * 359.97201 * 19 18 17 21 21 C 1.38837 * 119.99286 * 0.02562 * 20 19 18 22 22 C 1.38237 * 119.97082 * 359.97438 * 21 20 19 23 23 F 1.35099 * 120.01262 * 179.97438 * 22 21 20 24 24 N 1.40005 * 119.89955 * 179.97438 * 20 19 18 25 25 C 1.34574 * 120.43909 * 18.57461 * 24 20 19 26 26 O 1.21287 * 119.62163 * 180.75121 * 25 24 20 27 27 C 1.50496 * 120.76022 * 0.75045 * 25 24 20 28 28 C 1.50681 * 120.10373 * 179.97438 * 19 18 17 29 29 H 1.09001 * 109.47381 * 299.99846 * 1 2 3 30 30 H 1.09006 * 109.46913 * 60.00159 * 1 2 3 31 31 H 1.08995 * 109.47580 * 179.97438 * 1 2 3 32 32 H 0.96996 * 119.99617 * 180.02562 * 7 6 4 33 33 H 1.09003 * 109.47171 * 270.00072 * 13 12 2 34 34 H 1.09002 * 109.47273 * 30.00363 * 13 12 2 35 35 H 1.09005 * 109.47157 * 150.00269 * 13 12 2 36 36 H 0.97001 * 120.00186 * 5.60841 * 16 14 12 37 37 H 1.07998 * 119.99986 * 359.71977 * 18 17 16 38 38 H 1.08004 * 120.00781 * 180.02562 * 21 20 19 39 39 H 0.96998 * 119.77742 * 198.52342 * 24 20 19 40 40 H 1.09005 * 109.39661 * 204.66244 * 27 25 24 41 41 H 1.08997 * 109.32986 * 84.89291 * 27 25 24 42 42 H 1.09009 * 109.46015 * 266.02890 * 28 19 18 43 43 H 1.09001 * 109.46119 * 26.00072 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6531 -1.5885 1.1314 6 6 1.6991 -0.2394 2.4828 7 7 0.9427 0.8297 2.6034 8 14 2.3223 -1.1197 4.0080 9 1 3.1482 -2.2857 3.6038 10 1 3.1471 -0.1859 4.8161 11 1 1.1676 -1.5867 4.8165 12 7 2.0183 -0.6907 -1.1962 13 6 1.6644 -2.0932 -1.4280 14 6 2.7932 -0.0357 -2.0832 15 8 3.0867 1.1285 -1.8910 16 7 3.2420 -0.6708 -3.1840 17 6 4.1428 -0.0286 -4.0460 18 6 4.9599 0.9856 -3.5658 19 6 5.8470 1.6174 -4.4142 20 6 5.9234 1.2391 -5.7485 21 6 5.1068 0.2249 -6.2302 22 6 4.2183 -0.4083 -5.3813 23 9 3.4230 -1.3949 -5.8493 24 7 6.8239 1.8827 -6.6058 25 6 7.8587 2.5833 -6.1065 26 8 8.6220 3.1464 -6.8624 27 6 8.0798 2.6762 -4.6207 28 6 6.7347 2.7190 -3.8956 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 0.7087 1.1612 3.4844 33 1 2.4157 -2.7377 -0.9717 34 1 0.6903 -2.3002 -0.9847 35 1 1.6238 -2.2852 -2.5002 36 1 2.9422 -1.5723 -3.3799 37 1 4.8989 1.2832 -2.5294 38 1 5.1664 -0.0697 -7.2676 39 1 6.7015 1.8226 -7.5662 40 1 8.6422 3.5821 -4.3944 41 1 8.6443 1.8064 -4.2849 42 1 6.2579 3.6832 -4.0725 43 1 6.8941 2.5836 -2.8258 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120431955.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:06 Heat of formation + Delta-G solvation = -73.914337 kcal Electronic energy + Delta-G solvation = -28844.327402 eV Core-core repulsion = 24611.208197 eV Total energy + Delta-G solvation = -4233.119205 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.02254 -41.19239 -40.12037 -38.56096 -36.22766 -35.20964 -34.13746 -33.84770 -32.71360 -30.02634 -29.62901 -28.19223 -26.30055 -25.27583 -24.76165 -23.60286 -22.98042 -21.37728 -19.72465 -19.41924 -18.55311 -17.56652 -17.47296 -16.98484 -16.44833 -16.19584 -15.96512 -15.80414 -15.43720 -15.17176 -14.89325 -14.45910 -14.28568 -14.01778 -13.81953 -13.53625 -13.26647 -13.10196 -12.77575 -12.70906 -12.64762 -11.99506 -11.92769 -11.67131 -11.60851 -11.33933 -11.22055 -11.12057 -10.87005 -10.75593 -10.30934 -10.27703 -10.23313 -9.71394 -9.45981 -9.20326 -8.84596 -8.50141 -7.89922 -7.52422 -6.13888 -4.22020 0.87043 1.02566 2.26764 2.73447 2.94257 3.21804 3.30319 3.32183 3.33661 3.77964 3.97585 4.21985 4.25063 4.37950 4.43964 4.50552 4.70726 4.92966 4.97187 5.13689 5.17614 5.41883 5.47909 5.50959 5.59073 5.68661 5.80323 5.89905 5.96545 6.11904 6.16855 6.36338 6.49247 6.60899 6.72271 6.78304 6.89464 6.98593 7.03936 7.34865 7.60903 7.69908 7.72618 7.96871 8.11982 8.47982 8.77966 9.02312 9.44991 10.91415 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.016142 B = 0.002916 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.185822 B = 9599.787450 C =10728.964461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.272 3.728 3 H 0.067 0.933 4 C -0.527 4.527 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.599 5.599 13 C 0.085 3.915 14 C 0.698 3.302 15 O -0.576 6.576 16 N -0.688 5.688 17 C 0.144 3.856 18 C -0.072 4.072 19 C -0.105 4.105 20 C 0.150 3.850 21 C -0.162 4.162 22 C 0.081 3.919 23 F -0.136 7.136 24 N -0.659 5.659 25 C 0.524 3.476 26 O -0.534 6.534 27 C -0.138 4.138 28 C -0.077 4.077 29 H 0.096 0.904 30 H 0.012 0.988 31 H 0.030 0.970 32 H 0.263 0.737 33 H 0.052 0.948 34 H 0.080 0.920 35 H 0.045 0.955 36 H 0.407 0.593 37 H 0.171 0.829 38 H 0.141 0.859 39 H 0.410 0.590 40 H 0.110 0.890 41 H 0.105 0.895 42 H 0.087 0.913 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.800 -2.748 -15.130 17.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.172 3.828 3 H 0.085 0.915 4 C -0.565 4.565 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.333 5.333 13 C -0.059 4.059 14 C 0.400 3.600 15 O -0.454 6.454 16 N -0.337 5.337 17 C 0.045 3.955 18 C -0.093 4.093 19 C -0.108 4.108 20 C 0.053 3.947 21 C -0.184 4.184 22 C 0.058 3.942 23 F -0.115 7.115 24 N -0.304 5.304 25 C 0.313 3.687 26 O -0.410 6.410 27 C -0.178 4.178 28 C -0.114 4.114 29 H 0.114 0.886 30 H 0.031 0.969 31 H 0.049 0.951 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.098 0.902 35 H 0.064 0.936 36 H 0.244 0.756 37 H 0.188 0.812 38 H 0.159 0.841 39 H 0.247 0.753 40 H 0.128 0.872 41 H 0.123 0.877 42 H 0.105 0.895 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 8.306 -1.497 -14.940 17.159 hybrid contribution -0.324 -1.446 0.154 1.490 sum 7.981 -2.943 -14.786 17.059 Atomic orbital electron populations 1.22130 0.98158 0.99448 1.01018 1.18952 0.90740 0.94341 0.78781 0.91545 1.21347 1.31928 1.13086 0.90177 0.92185 1.24886 0.94907 0.94966 0.98968 1.69882 1.36271 1.22576 1.23768 0.86430 0.78614 0.79579 0.82702 1.19831 1.20870 1.20938 1.47659 1.50578 1.11606 1.23480 1.21548 1.02385 0.83352 0.98640 1.15937 0.79799 0.84851 0.79430 1.90820 1.62665 1.15170 1.76789 1.42936 1.46949 1.19086 1.24698 1.17547 0.93167 0.97341 0.87491 1.21262 0.91565 0.94143 1.02368 1.19462 0.99856 0.99800 0.91701 1.17172 0.93153 0.94286 0.90056 1.20295 0.99370 0.98175 1.00555 1.16924 0.95248 0.91832 0.90219 1.91475 1.72027 1.59227 1.88748 1.43543 1.26336 1.50618 1.09911 1.20809 0.79182 0.76694 0.92061 1.90774 1.44510 1.44761 1.60997 1.21713 0.99644 1.06143 0.90265 1.20434 0.92267 0.97327 1.01341 0.88588 0.96875 0.95061 0.92656 0.92934 0.90179 0.93633 0.75588 0.81202 0.84087 0.75272 0.87188 0.87711 0.89479 0.88349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 8.95 37.16 0.33 -3.07 16 2 C 0.27 6.57 2.64 -69.08 -0.18 6.39 16 3 H 0.07 1.86 6.90 -51.93 -0.36 1.50 16 4 C -0.53 -13.56 8.37 -34.44 -0.29 -13.85 16 5 H 0.06 1.53 7.65 -52.49 -0.40 1.13 16 6 C 0.07 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -24.16 11.32 55.43 0.63 -23.53 16 8 Si 0.90 20.30 29.54 -169.99 -5.02 15.28 16 9 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 12 N -0.60 -12.00 2.75 -181.01 -0.50 -12.49 16 13 C 0.08 1.31 9.49 59.84 0.57 1.88 16 14 C 0.70 13.60 8.09 -86.92 -0.70 12.90 16 15 O -0.58 -12.93 12.83 5.29 0.07 -12.87 16 16 N -0.69 -10.47 5.20 -14.12 -0.07 -10.55 16 17 C 0.14 2.03 6.44 -83.50 -0.54 1.49 16 18 C -0.07 -1.01 8.36 -39.44 -0.33 -1.34 16 19 C -0.10 -1.19 5.66 -104.46 -0.59 -1.78 16 20 C 0.15 1.55 6.51 -83.66 -0.54 1.01 16 21 C -0.16 -1.63 9.89 -39.36 -0.39 -2.02 16 22 C 0.08 0.98 7.30 -39.29 -0.29 0.69 16 23 F -0.14 -1.63 16.81 2.25 0.04 -1.59 16 24 N -0.66 -6.19 5.37 -9.96 -0.05 -6.25 16 25 C 0.52 5.63 7.72 -11.18 -0.09 5.54 16 26 O -0.53 -7.49 17.91 5.55 0.10 -7.39 16 27 C -0.14 -1.15 6.07 -28.05 -0.17 -1.32 16 28 C -0.08 -0.70 5.99 -27.96 -0.17 -0.87 16 29 H 0.10 2.42 6.07 -51.93 -0.32 2.10 16 30 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.03 0.65 6.66 -51.93 -0.35 0.31 16 32 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.08 1.26 6.43 -51.93 -0.33 0.92 16 35 H 0.05 0.55 6.29 -51.93 -0.33 0.22 16 36 H 0.41 5.21 6.14 -40.82 -0.25 4.96 16 37 H 0.17 2.78 5.77 -52.49 -0.30 2.47 16 38 H 0.14 1.06 8.06 -52.48 -0.42 0.64 16 39 H 0.41 3.13 8.83 -40.82 -0.36 2.77 16 40 H 0.11 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.09 0.78 8.14 -51.92 -0.42 0.36 16 43 H 0.10 0.83 8.06 -51.93 -0.42 0.41 16 LS Contribution 355.70 15.07 5.36 5.36 Total: -1.00 -31.24 355.70 -8.01 -39.25 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -5.08 Total: 7.52 kcal Atomic # 6 Polarization: 10.74 SS G_CDS: -3.47 Total: 7.27 kcal Atomic # 7 Polarization: -52.82 SS G_CDS: 0.00 Total: -52.82 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: 0.17 Total: -20.26 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.04 Total: -1.59 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.24 -8.01 -39.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120431955.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.667 kcal (2) G-P(sol) polarization free energy of solvation -31.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds