Wall clock time and date at job start Tue Mar 31 2020 18:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36057 * 116.99945 * 2 1 4 4 C 1.38637 * 119.98767 * 359.72083 * 3 2 1 5 5 C 1.38137 * 120.04633 * 180.27581 * 4 3 2 6 6 C 1.38868 * 120.01756 * 0.02562 * 5 4 3 7 7 N 1.39935 * 120.00992 * 180.02562 * 6 5 4 8 8 C 1.46495 * 120.00094 * 359.97438 * 7 6 5 9 9 C 1.50699 * 109.47055 * 179.97438 * 8 7 6 10 10 O 1.21287 * 119.99917 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00099 * 179.97438 * 9 8 7 12 12 C 1.46502 * 120.00117 * 180.02562 * 11 9 8 13 13 C 1.50695 * 109.47502 * 89.99951 * 12 11 9 14 14 H 1.08005 * 120.00023 * 359.97438 * 13 12 11 15 15 C 1.37881 * 120.00412 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00201 * 179.97438 * 15 13 12 17 17 Si 1.86793 * 119.99601 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.47197 * 90.00045 * 17 15 13 19 19 H 1.48507 * 109.47247 * 210.00138 * 17 15 13 20 20 H 1.48500 * 109.47371 * 330.00145 * 17 15 13 21 21 C 1.46506 * 119.99999 * 359.97438 * 11 9 8 22 22 C 1.53002 * 109.46508 * 90.00394 * 21 11 9 23 23 C 1.47205 * 109.46803 * 180.02562 * 22 21 11 24 24 N 9.61879 * 75.33361 * 8.67214 * 2 1 3 25 25 C 1.38837 * 119.97814 * 0.02562 * 6 5 4 26 26 C 1.38290 * 119.95893 * 359.97438 * 25 6 5 27 27 F 1.35100 * 120.01519 * 179.97438 * 26 25 6 28 28 H 1.08994 * 109.47302 * 299.99785 * 1 2 3 29 29 H 1.08999 * 109.47353 * 60.00491 * 1 2 3 30 30 H 1.09004 * 109.46884 * 179.97438 * 1 2 3 31 31 H 1.08003 * 119.97630 * 0.25808 * 4 3 2 32 32 H 1.07998 * 119.99152 * 179.97438 * 5 4 3 33 33 H 0.97002 * 119.99800 * 179.97438 * 7 6 5 34 34 H 1.09005 * 109.46732 * 299.99267 * 8 7 6 35 35 H 1.08993 * 109.47151 * 59.99628 * 8 7 6 36 36 H 1.09002 * 109.46661 * 209.99800 * 12 11 9 37 37 H 1.08998 * 109.46780 * 329.99435 * 12 11 9 38 38 H 0.96997 * 120.00216 * 179.97438 * 16 15 13 39 39 H 1.09002 * 109.46924 * 210.00081 * 21 11 9 40 40 H 1.08998 * 109.47118 * 330.00594 * 21 11 9 41 41 H 1.09004 * 109.47056 * 299.99970 * 22 21 11 42 42 H 1.08998 * 109.47268 * 60.00291 * 22 21 11 43 43 H 1.08002 * 120.02364 * 180.02562 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0467 1.2123 0.0000 4 6 1.2913 2.3748 -0.0059 5 6 1.9172 3.6062 -0.0116 6 6 3.3039 3.6808 -0.0121 7 7 3.9377 4.9283 -0.0174 8 6 3.1385 6.1560 -0.0230 9 6 4.0551 7.3521 -0.0274 10 8 5.2577 7.1946 -0.0254 11 7 3.5386 8.5970 -0.0334 12 6 4.4297 9.7598 -0.0382 13 6 4.7362 10.1520 -1.4605 14 1 4.3101 9.5910 -2.2792 15 6 5.5613 11.2265 -1.7169 16 7 5.8291 11.5685 -2.9582 17 14 6.2987 12.1965 -0.3011 18 1 7.6051 11.6015 0.0791 19 1 6.5001 13.6071 -0.7192 20 1 5.3772 12.1519 0.8625 21 6 2.0860 8.7873 -0.0362 22 6 1.5784 8.8598 1.4053 23 6 0.1187 9.0504 1.4025 24 7 -1.0064 9.1990 1.4031 25 6 4.0612 2.5171 -0.0073 26 6 3.4336 1.2848 -0.0015 27 9 4.1694 0.1517 0.0026 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2128 2.3176 -0.0062 32 1 1.3279 4.5113 -0.0166 33 1 4.9064 4.9802 -0.0173 34 1 2.5100 6.1762 -0.9134 35 1 2.5094 6.1840 0.8666 36 1 3.9439 10.5919 0.4715 37 1 5.3568 9.5092 0.4775 38 1 6.4093 12.3246 -3.1386 39 1 1.8421 9.7148 -0.5544 40 1 1.6108 7.9499 -0.5471 41 1 1.8224 7.9323 1.9235 42 1 2.0535 9.6972 1.9162 43 1 5.1397 2.5742 -0.0073 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125099975.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:35 Heat of formation + Delta-G solvation = -74.670241 kcal Electronic energy + Delta-G solvation = -27756.587945 eV Core-core repulsion = 23523.435961 eV Total energy + Delta-G solvation = -4233.151984 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.80772 -41.17835 -40.68575 -38.90742 -37.99695 -36.79311 -35.59892 -34.75868 -32.35017 -31.78263 -30.91730 -29.71879 -28.14986 -27.04532 -25.22548 -24.32933 -23.58061 -22.45823 -20.16952 -19.37872 -19.16106 -18.70081 -18.37399 -17.97767 -17.63581 -17.12548 -17.04845 -16.53239 -16.23041 -15.97401 -15.95064 -15.74529 -15.71007 -15.33214 -15.06967 -14.85067 -14.50834 -14.43589 -14.05731 -13.76230 -13.66306 -13.52480 -13.40229 -13.24840 -13.15511 -12.94761 -12.71767 -12.64458 -12.38939 -12.20856 -11.98180 -11.95937 -11.83552 -11.67947 -10.77356 -10.74813 -10.50336 -9.82731 -9.49967 -8.27115 -8.15834 -6.31845 0.17718 0.50470 1.39780 1.43845 1.50668 1.66336 1.77634 1.91870 2.05461 2.37089 2.38173 2.58320 2.70111 3.07820 3.16125 3.37441 3.64757 3.80510 4.05072 4.11519 4.13111 4.21349 4.35144 4.42273 4.44872 4.48512 4.51792 4.65876 4.70524 4.79863 4.85006 4.89895 5.00766 5.03189 5.13972 5.22008 5.29417 5.52621 5.55175 5.61177 6.18865 6.29306 6.46623 6.59909 6.68344 6.72172 6.74249 7.24782 7.37647 8.89629 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013002 B = 0.002665 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.995502 B =10503.847224 C =12125.913981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.342 6.342 3 C 0.021 3.979 4 C -0.122 4.122 5 C -0.165 4.165 6 C 0.214 3.786 7 N -0.737 5.737 8 C 0.110 3.890 9 C 0.500 3.500 10 O -0.581 6.581 11 N -0.588 5.588 12 C 0.221 3.779 13 C -0.532 4.532 14 H 0.031 0.969 15 C 0.008 3.992 16 N -0.950 5.950 17 Si 0.943 3.057 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.224 1.224 21 C 0.107 3.893 22 C -0.039 4.039 23 C 0.245 3.755 24 N -0.491 5.491 25 C -0.205 4.205 26 C 0.090 3.910 27 F -0.148 7.148 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.113 0.887 31 H 0.167 0.833 32 H 0.161 0.839 33 H 0.405 0.595 34 H 0.109 0.891 35 H 0.130 0.870 36 H 0.063 0.937 37 H 0.026 0.974 38 H 0.265 0.735 39 H 0.086 0.914 40 H 0.110 0.890 41 H 0.142 0.858 42 H 0.128 0.872 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.458 -16.519 11.220 24.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.257 6.257 3 C -0.025 4.025 4 C -0.141 4.141 5 C -0.187 4.187 6 C 0.110 3.890 7 N -0.370 5.370 8 C -0.017 4.017 9 C 0.288 3.712 10 O -0.460 6.460 11 N -0.318 5.318 12 C 0.099 3.901 13 C -0.571 4.571 14 H 0.049 0.951 15 C -0.190 4.190 16 N -0.590 5.590 17 Si 0.766 3.234 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.147 1.147 21 C -0.018 4.018 22 C -0.080 4.080 23 C -0.072 4.072 24 N -0.169 5.169 25 C -0.229 4.229 26 C 0.070 3.930 27 F -0.127 7.127 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.131 0.869 31 H 0.184 0.816 32 H 0.179 0.821 33 H 0.242 0.758 34 H 0.127 0.873 35 H 0.148 0.852 36 H 0.081 0.919 37 H 0.044 0.956 38 H 0.074 0.926 39 H 0.104 0.896 40 H 0.128 0.872 41 H 0.160 0.840 42 H 0.145 0.855 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -14.461 -16.292 11.125 24.461 hybrid contribution 1.787 0.571 -0.325 1.904 sum -12.674 -15.721 10.800 22.901 Atomic orbital electron populations 1.23335 0.76283 1.05414 1.02486 1.86082 1.23567 1.26074 1.89950 1.18896 0.90338 0.86542 1.06769 1.21182 1.01237 0.89938 1.01696 1.20867 0.91669 0.99158 1.07017 1.17463 0.92125 0.84350 0.95037 1.44486 1.09156 1.01300 1.82026 1.21349 0.93049 0.81362 1.05918 1.21055 0.89001 0.85304 0.75836 1.90681 1.17908 1.85855 1.51595 1.47757 1.07298 1.05497 1.71253 1.19443 0.90816 0.84795 0.95030 1.21618 1.29241 1.13316 0.92878 0.95085 1.25855 0.96369 0.98524 0.98248 1.70060 1.38503 1.29081 1.21392 0.85793 0.79818 0.77353 0.80448 1.20603 1.21246 1.14659 1.21648 0.78717 1.05707 0.95687 1.19875 0.80391 1.08293 0.99395 1.29123 0.94895 0.91440 0.91765 1.81241 1.14769 1.10977 1.09942 1.20384 1.00986 0.89433 1.12114 1.16887 0.86621 0.82071 1.07413 1.91438 1.77227 1.49706 1.94338 0.91272 0.91482 0.86881 0.81577 0.82132 0.75775 0.87295 0.85218 0.91901 0.95556 0.92596 0.89562 0.87199 0.84018 0.85452 0.84268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.31 16 2 O -0.34 -7.12 10.36 -94.19 -0.98 -8.09 16 3 C 0.02 0.46 6.69 22.52 0.15 0.61 16 4 C -0.12 -1.85 9.03 22.34 0.20 -1.65 16 5 C -0.16 -2.51 9.31 22.40 0.21 -2.30 16 6 C 0.21 4.32 6.65 38.14 0.25 4.57 16 7 N -0.74 -15.98 5.71 -343.02 -1.96 -17.94 16 8 C 0.11 1.99 3.95 85.63 0.34 2.33 16 9 C 0.50 14.80 7.74 87.66 0.68 15.48 16 10 O -0.58 -23.49 15.25 -3.05 -0.05 -23.54 16 11 N -0.59 -17.04 2.46 -826.14 -2.03 -19.07 16 12 C 0.22 8.70 4.23 85.63 0.36 9.06 16 13 C -0.53 -27.82 9.94 25.60 0.25 -27.57 16 14 H 0.03 1.84 8.06 -2.91 -0.02 1.82 16 15 C 0.01 0.42 5.47 84.66 0.46 0.88 16 16 N -0.95 -57.43 13.96 21.45 0.30 -57.13 16 17 Si 0.94 40.64 27.47 68.60 1.88 42.52 16 18 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 19 H -0.29 -12.34 7.11 99.48 0.71 -11.64 16 20 H -0.22 -8.10 6.54 99.48 0.65 -7.45 16 21 C 0.11 1.93 5.17 86.38 0.45 2.38 16 22 C -0.04 -0.43 6.03 28.79 0.17 -0.25 16 23 C 0.25 3.98 15.43 89.46 1.38 5.36 16 24 N -0.49 -11.46 18.53 19.99 0.37 -11.09 16 25 C -0.21 -4.69 9.87 22.43 0.22 -4.47 16 26 C 0.09 2.24 7.31 22.44 0.16 2.41 16 27 F -0.15 -4.15 17.11 44.97 0.77 -3.38 16 28 H 0.07 0.50 7.67 -2.39 -0.02 0.48 16 29 H 0.07 0.52 7.65 -2.39 -0.02 0.50 16 30 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.17 1.44 6.29 -2.91 -0.02 1.42 16 32 H 0.16 1.46 6.73 -2.91 -0.02 1.44 16 33 H 0.41 10.49 7.45 -92.71 -0.69 9.80 16 34 H 0.11 1.60 7.21 -2.38 -0.02 1.59 16 35 H 0.13 1.24 6.99 -2.39 -0.02 1.22 16 36 H 0.06 2.15 7.13 -2.39 -0.02 2.13 16 37 H 0.03 1.13 6.85 -2.39 -0.02 1.11 16 38 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 39 H 0.09 1.86 8.07 -2.39 -0.02 1.84 16 40 H 0.11 1.36 6.44 -2.39 -0.02 1.34 16 41 H 0.14 0.71 7.22 -2.39 -0.02 0.69 16 42 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.14 3.06 8.06 -2.91 -0.02 3.04 16 Total: -1.00 -80.57 374.62 5.04 -75.53 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: 0.32 Total: 14.06 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: 6.41 Total: 8.14 kcal Atomic # 7 Polarization: -101.91 SS G_CDS: -3.32 Total: -105.23 kcal Atomic # 8 Polarization: -30.61 SS G_CDS: -1.02 Total: -31.63 kcal Atomic # 9 Polarization: -4.15 SS G_CDS: 0.77 Total: -3.38 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 1.88 Total: 42.52 kcal Total: -80.57 5.04 -75.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125099975.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.856 kcal (2) G-P(sol) polarization free energy of solvation -80.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds