Wall clock time and date at job start Tue Mar 31 2020 18:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.46968 * 2 1 4 4 C 1.46503 * 119.99900 * 269.99517 * 3 2 1 5 5 C 1.52998 * 109.47407 * 270.00196 * 4 3 2 6 6 C 1.47196 * 109.47379 * 180.02562 * 5 4 3 7 7 N 5.65203 * 117.52761 * 307.63803 * 2 1 3 8 8 C 1.34769 * 119.99994 * 89.99873 * 3 2 1 9 9 O 1.21285 * 120.00106 * 179.97438 * 8 3 2 10 10 C 1.50696 * 120.00261 * 0.02562 * 8 3 2 11 11 N 1.46507 * 109.47376 * 180.02562 * 10 8 3 12 12 C 1.39929 * 119.99805 * 179.97438 * 11 10 8 13 13 C 1.38713 * 120.08073 * 0.02562 * 12 11 10 14 14 C 1.38220 * 120.01474 * 179.97438 * 13 12 11 15 15 C 1.38522 * 120.17625 * 0.02562 * 14 13 12 16 16 F 1.35098 * 119.92139 * 179.97438 * 15 14 13 17 17 C 1.38364 * 120.16003 * 359.97438 * 15 14 13 18 18 C 1.38720 * 119.97940 * 359.97438 * 17 15 14 19 19 O 1.35794 * 120.08317 * 180.29569 * 18 17 15 20 20 C 1.34801 * 117.00313 * 354.40795 * 19 18 17 21 21 H 1.07999 * 119.99778 * 5.07674 * 20 19 18 22 22 C 1.38629 * 119.99953 * 185.06987 * 20 19 18 23 23 N 1.31578 * 120.00246 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99841 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.46986 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47096 * 120.00320 * 24 22 20 27 27 H 1.48499 * 109.46790 * 239.99949 * 24 22 20 28 28 H 1.09000 * 109.46618 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.46876 * 300.00383 * 1 2 3 30 30 H 1.08997 * 109.46980 * 60.00220 * 1 2 3 31 31 H 1.08999 * 109.47413 * 239.99975 * 2 1 3 32 32 H 1.08997 * 109.46980 * 119.99779 * 2 1 3 33 33 H 1.09001 * 109.46898 * 30.00162 * 4 3 2 34 34 H 1.08999 * 109.46812 * 150.00220 * 4 3 2 35 35 H 1.09001 * 109.46879 * 300.00386 * 5 4 3 36 36 H 1.09005 * 109.46825 * 59.99882 * 5 4 3 37 37 H 1.09001 * 109.47753 * 59.99604 * 10 8 3 38 38 H 1.09003 * 109.46874 * 299.99807 * 10 8 3 39 39 H 0.96996 * 119.99575 * 359.97438 * 11 10 8 40 40 H 1.07995 * 119.99180 * 359.97438 * 13 12 11 41 41 H 1.08000 * 119.90951 * 180.02562 * 14 13 12 42 42 H 1.07997 * 120.00821 * 180.02562 * 17 15 14 43 43 H 0.97003 * 120.00089 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2626 2.0718 -1.2688 5 6 3.7076 1.8314 -1.7104 6 6 3.9531 2.5258 -2.9849 7 7 4.1423 3.0608 -3.9690 8 6 2.2429 2.0166 1.1671 9 8 2.6476 3.1599 1.1672 10 6 1.9923 1.3061 2.4722 11 7 2.3089 2.2039 3.5858 12 6 2.1532 1.7642 4.9051 13 6 1.6998 0.4784 5.1604 14 6 1.5470 0.0453 6.4641 15 6 1.8452 0.8924 7.5187 16 9 1.6935 0.4639 8.7909 17 6 2.2980 2.1764 7.2723 18 6 2.4547 2.6176 5.9665 19 8 2.9047 3.8753 5.7223 20 6 3.0707 4.6837 6.7882 21 1 2.9272 4.2973 7.7864 22 6 3.4257 6.0109 6.6029 23 7 3.6002 6.4817 5.3867 24 14 3.6564 7.1309 8.0800 25 1 3.4028 6.3647 9.3265 26 1 5.0466 7.6526 8.0932 27 1 2.7026 8.2658 7.9944 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.5818 1.6877 -2.0284 34 1 2.0956 3.1411 -1.1384 35 1 4.3883 2.2156 -0.9507 36 1 3.8745 0.7622 -1.8407 37 1 2.6228 0.4188 2.5299 38 1 0.9444 1.0115 2.5302 39 1 2.6264 3.1031 3.4085 40 1 1.4661 -0.1844 4.3404 41 1 1.1942 -0.9563 6.6609 42 1 2.5301 2.8347 8.0964 43 1 3.8482 7.4105 5.2571 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134213333.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:08 Heat of formation + Delta-G solvation = -45.831167 kcal Electronic energy + Delta-G solvation = -28046.918845 eV Core-core repulsion = 23815.017417 eV Total energy + Delta-G solvation = -4231.901428 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.07302 -40.38498 -39.12747 -37.28210 -36.57290 -36.25871 -34.52756 -32.81594 -32.28410 -30.25916 -29.30521 -29.07963 -26.33438 -25.38791 -24.36922 -23.54532 -21.85413 -21.06044 -19.27859 -18.18627 -18.10586 -18.00760 -17.09445 -16.68000 -15.88905 -15.75986 -15.51214 -15.18221 -15.06485 -14.85531 -14.36111 -14.30473 -14.20251 -14.13307 -13.70088 -13.64041 -13.32827 -13.21587 -13.03987 -12.88460 -12.83122 -12.66498 -12.19661 -12.13280 -12.01794 -11.92614 -11.55478 -11.42518 -11.33750 -11.27945 -10.87180 -10.56257 -10.40064 -9.96707 -9.57208 -9.35056 -9.11419 -8.85009 -7.76850 -6.50883 -6.44820 -4.01643 2.08249 2.20415 2.26799 2.45589 2.50984 2.67313 3.13450 3.15635 3.21146 3.73453 3.91271 3.98798 4.26395 4.43710 4.51443 4.56749 4.64631 4.84069 4.94354 4.95217 5.00915 5.09165 5.22464 5.26794 5.31878 5.33479 5.39542 5.43736 5.54422 5.55879 5.80307 5.84025 6.06158 6.12297 6.36573 6.53101 6.77790 6.97541 6.99181 7.08907 7.25436 7.26439 7.57532 7.88766 7.95037 8.01220 8.40592 8.99624 9.64990 10.71586 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.009666 B = 0.003208 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2895.961247 B = 8726.588744 C =11288.661637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.101 3.899 3 N -0.616 5.616 4 C 0.122 3.878 5 C -0.044 4.044 6 C 0.212 3.788 7 N -0.435 5.435 8 C 0.509 3.491 9 O -0.511 6.511 10 C 0.117 3.883 11 N -0.736 5.736 12 C 0.153 3.847 13 C -0.147 4.147 14 C -0.198 4.198 15 C 0.090 3.910 16 F -0.157 7.157 17 C -0.243 4.243 18 C 0.125 3.875 19 O -0.171 6.171 20 C -0.389 4.389 21 H 0.093 0.907 22 C 0.041 3.959 23 N -0.856 5.856 24 Si 0.940 3.060 25 H -0.266 1.266 26 H -0.276 1.276 27 H -0.276 1.276 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.115 0.885 36 H 0.110 0.890 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.421 0.579 40 H 0.119 0.881 41 H 0.117 0.883 42 H 0.139 0.861 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.909 -15.764 -10.599 19.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.022 4.022 3 N -0.351 5.351 4 C -0.003 4.003 5 C -0.086 4.086 6 C -0.107 4.107 7 N -0.112 5.112 8 C 0.296 3.704 9 O -0.384 6.384 10 C -0.012 4.012 11 N -0.375 5.375 12 C 0.052 3.948 13 C -0.171 4.171 14 C -0.219 4.219 15 C 0.069 3.931 16 F -0.136 7.136 17 C -0.264 4.264 18 C 0.069 3.931 19 O -0.075 6.075 20 C -0.465 4.465 21 H 0.110 0.890 22 C -0.164 4.164 23 N -0.491 5.491 24 Si 0.765 3.235 25 H -0.190 1.190 26 H -0.202 1.202 27 H -0.202 1.202 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.113 0.887 35 H 0.133 0.867 36 H 0.128 0.872 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.260 0.740 40 H 0.137 0.863 41 H 0.135 0.865 42 H 0.156 0.844 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.317 -14.103 -12.452 19.302 hybrid contribution 0.087 0.453 1.308 1.387 sum -4.230 -13.649 -11.144 18.122 Atomic orbital electron populations 1.22250 0.95514 1.02667 1.03005 1.21692 0.94841 0.81758 1.03910 1.47917 1.67205 1.14784 1.05238 1.21265 0.93480 1.00179 0.85373 1.19695 1.00251 1.00443 0.88177 1.28941 0.93626 0.93699 0.94425 1.81255 1.08214 1.09382 1.12328 1.20835 0.77097 0.86894 0.85527 1.90811 1.43603 1.17360 1.86655 1.20932 1.01636 0.93794 0.84810 1.44088 1.75880 1.17325 1.00206 1.17025 1.02132 0.92840 0.82835 1.19886 1.07347 0.93830 0.96023 1.20255 1.10398 0.99748 0.91488 1.17244 1.04286 0.93581 0.77994 1.91381 1.94028 1.90317 1.37915 1.20786 1.11933 0.96128 0.97576 1.18579 0.96338 0.87408 0.90789 1.83922 1.71597 1.16934 1.35049 1.21343 1.48647 0.90667 0.85823 0.88973 1.25274 0.96613 0.96301 0.98245 1.70058 1.43028 1.15671 1.20293 0.85659 0.78318 0.79663 0.79897 1.19040 1.20151 1.20156 0.91140 0.91899 0.92197 0.89814 0.89577 0.89488 0.88669 0.86671 0.87176 0.89915 0.89928 0.73960 0.86265 0.86520 0.84391 0.92016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.77 10.24 37.16 0.38 -0.39 16 2 C 0.10 0.41 5.93 -4.04 -0.02 0.39 16 3 N -0.62 -4.63 2.47 -173.69 -0.43 -5.06 16 4 C 0.12 0.82 5.36 -4.04 -0.02 0.80 16 5 C -0.04 -0.26 6.03 -29.52 -0.18 -0.44 16 6 C 0.21 1.93 15.43 -20.76 -0.32 1.61 16 7 N -0.43 -5.41 18.54 42.15 0.78 -4.63 16 8 C 0.51 6.16 7.74 -10.99 -0.09 6.08 16 9 O -0.51 -8.75 15.25 5.55 0.08 -8.67 16 10 C 0.12 1.39 3.95 -5.19 -0.02 1.37 16 11 N -0.74 -13.18 5.70 -59.63 -0.34 -13.52 16 12 C 0.15 2.96 6.67 -83.52 -0.56 2.40 16 13 C -0.15 -2.36 9.31 -39.41 -0.37 -2.73 16 14 C -0.20 -3.35 10.02 -39.48 -0.40 -3.74 16 15 C 0.09 1.76 7.29 -39.43 -0.29 1.47 16 16 F -0.16 -3.01 17.26 2.25 0.04 -2.97 16 17 C -0.24 -5.33 9.14 -39.36 -0.36 -5.69 16 18 C 0.12 2.90 6.67 -38.94 -0.26 2.64 16 19 O -0.17 -4.67 9.00 -0.01 0.00 -4.67 16 20 C -0.39 -10.66 9.49 30.88 0.29 -10.37 16 21 H 0.09 2.38 5.21 -52.49 -0.27 2.10 16 22 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 23 N -0.86 -24.79 13.67 55.48 0.76 -24.03 16 24 Si 0.94 20.54 29.55 -169.99 -5.02 15.51 16 25 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16 26 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 27 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 28 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 29 H 0.06 0.37 7.22 -51.93 -0.38 0.00 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.08 0.16 8.07 -51.93 -0.42 -0.26 16 32 H 0.09 0.29 6.44 -51.93 -0.33 -0.04 16 33 H 0.09 0.38 8.07 -51.93 -0.42 -0.04 16 34 H 0.09 0.89 7.42 -51.93 -0.39 0.50 16 35 H 0.12 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.08 0.78 7.21 -51.93 -0.37 0.41 16 38 H 0.08 0.83 7.00 -51.93 -0.36 0.46 16 39 H 0.42 9.03 6.80 -40.82 -0.28 8.75 16 40 H 0.12 1.44 6.73 -52.49 -0.35 1.09 16 41 H 0.12 1.65 8.06 -52.49 -0.42 1.22 16 42 H 0.14 3.10 5.64 -52.49 -0.30 2.80 16 43 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 376.28 15.07 5.67 5.67 Total: -1.00 -34.51 376.28 -5.88 -40.38 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -5.12 Total: 7.59 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -2.30 Total: -5.60 kcal Atomic # 7 Polarization: -48.01 SS G_CDS: 0.77 Total: -47.24 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: 0.08 Total: -13.34 kcal Atomic # 9 Polarization: -3.01 SS G_CDS: 0.04 Total: -2.97 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.51 -5.88 -40.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134213333.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.447 kcal (2) G-P(sol) polarization free energy of solvation -34.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds