Wall clock time and date at job start Tue Mar 31 2020 18:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.46968 * 2 1 4 4 C 1.46503 * 119.99900 * 269.99517 * 3 2 1 5 5 C 1.52998 * 109.47407 * 270.00196 * 4 3 2 6 6 C 1.47196 * 109.47379 * 180.02562 * 5 4 3 7 7 N 5.65203 * 117.52761 * 307.63803 * 2 1 3 8 8 C 1.34769 * 119.99994 * 89.99873 * 3 2 1 9 9 O 1.21285 * 120.00106 * 179.97438 * 8 3 2 10 10 C 1.50696 * 120.00261 * 0.02562 * 8 3 2 11 11 N 1.46507 * 109.47376 * 180.02562 * 10 8 3 12 12 C 1.39929 * 119.99805 * 179.97438 * 11 10 8 13 13 C 1.38713 * 120.08073 * 0.02562 * 12 11 10 14 14 C 1.38220 * 120.01474 * 179.97438 * 13 12 11 15 15 C 1.38522 * 120.17625 * 0.02562 * 14 13 12 16 16 F 1.35098 * 119.92139 * 179.97438 * 15 14 13 17 17 C 1.38364 * 120.16003 * 359.97438 * 15 14 13 18 18 C 1.38720 * 119.97940 * 359.97438 * 17 15 14 19 19 O 1.35794 * 120.08317 * 180.29569 * 18 17 15 20 20 C 1.34801 * 117.00313 * 354.40795 * 19 18 17 21 21 H 1.07999 * 119.99778 * 5.07674 * 20 19 18 22 22 C 1.38629 * 119.99953 * 185.06987 * 20 19 18 23 23 N 1.31578 * 120.00246 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99841 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.46986 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47096 * 120.00320 * 24 22 20 27 27 H 1.48499 * 109.46790 * 239.99949 * 24 22 20 28 28 H 1.09000 * 109.46618 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.46876 * 300.00383 * 1 2 3 30 30 H 1.08997 * 109.46980 * 60.00220 * 1 2 3 31 31 H 1.08999 * 109.47413 * 239.99975 * 2 1 3 32 32 H 1.08997 * 109.46980 * 119.99779 * 2 1 3 33 33 H 1.09001 * 109.46898 * 30.00162 * 4 3 2 34 34 H 1.08999 * 109.46812 * 150.00220 * 4 3 2 35 35 H 1.09001 * 109.46879 * 300.00386 * 5 4 3 36 36 H 1.09005 * 109.46825 * 59.99882 * 5 4 3 37 37 H 1.09001 * 109.47753 * 59.99604 * 10 8 3 38 38 H 1.09003 * 109.46874 * 299.99807 * 10 8 3 39 39 H 0.96996 * 119.99575 * 359.97438 * 11 10 8 40 40 H 1.07995 * 119.99180 * 359.97438 * 13 12 11 41 41 H 1.08000 * 119.90951 * 180.02562 * 14 13 12 42 42 H 1.07997 * 120.00821 * 180.02562 * 17 15 14 43 43 H 0.97003 * 120.00089 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2626 2.0718 -1.2688 5 6 3.7076 1.8314 -1.7104 6 6 3.9531 2.5258 -2.9849 7 7 4.1423 3.0608 -3.9690 8 6 2.2429 2.0166 1.1671 9 8 2.6476 3.1599 1.1672 10 6 1.9923 1.3061 2.4722 11 7 2.3089 2.2039 3.5858 12 6 2.1532 1.7642 4.9051 13 6 1.6998 0.4784 5.1604 14 6 1.5470 0.0453 6.4641 15 6 1.8452 0.8924 7.5187 16 9 1.6935 0.4639 8.7909 17 6 2.2980 2.1764 7.2723 18 6 2.4547 2.6176 5.9665 19 8 2.9047 3.8753 5.7223 20 6 3.0707 4.6837 6.7882 21 1 2.9272 4.2973 7.7864 22 6 3.4257 6.0109 6.6029 23 7 3.6002 6.4817 5.3867 24 14 3.6564 7.1309 8.0800 25 1 3.4028 6.3647 9.3265 26 1 5.0466 7.6526 8.0932 27 1 2.7026 8.2658 7.9944 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.5818 1.6877 -2.0284 34 1 2.0956 3.1411 -1.1384 35 1 4.3883 2.2156 -0.9507 36 1 3.8745 0.7622 -1.8407 37 1 2.6228 0.4188 2.5299 38 1 0.9444 1.0115 2.5302 39 1 2.6264 3.1031 3.4085 40 1 1.4661 -0.1844 4.3404 41 1 1.1942 -0.9563 6.6609 42 1 2.5301 2.8347 8.0964 43 1 3.8482 7.4105 5.2571 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134213333.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:07 Heat of formation + Delta-G solvation = -69.595934 kcal Electronic energy + Delta-G solvation = -28047.949362 eV Core-core repulsion = 23815.017417 eV Total energy + Delta-G solvation = -4232.931945 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.58831 -41.30499 -40.67135 -38.30619 -37.97539 -37.06120 -35.83967 -34.25158 -33.41362 -30.93191 -30.86705 -30.23529 -27.59666 -27.22802 -25.03689 -24.19839 -23.36333 -22.51129 -20.15838 -19.93889 -19.32153 -18.75753 -18.36308 -17.69388 -17.10580 -16.87530 -16.72842 -16.63419 -16.36098 -15.92612 -15.81413 -15.47179 -15.42992 -15.02684 -14.96906 -14.88927 -14.59561 -14.26658 -14.06069 -13.72705 -13.68799 -13.65607 -13.46296 -13.37037 -13.09650 -12.93982 -12.77228 -12.52971 -12.42701 -12.15526 -12.00906 -11.90381 -11.84031 -11.47151 -10.91564 -10.79108 -10.72026 -9.78305 -9.38342 -8.44067 -8.00929 -6.07648 0.54066 0.67208 1.34626 1.41805 1.48470 1.51990 1.63026 1.77472 1.93723 2.17120 2.68025 2.81592 3.11544 3.14454 3.40185 3.50776 3.71029 4.02277 4.06531 4.08429 4.20773 4.31189 4.39541 4.43258 4.48714 4.56147 4.59104 4.75005 4.77744 4.83960 4.95542 5.04581 5.06897 5.13853 5.16061 5.37460 5.49655 5.51640 5.53820 5.60704 5.97559 6.08471 6.27174 6.55018 6.59591 6.78011 7.00810 7.13478 7.80118 8.77744 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.009666 B = 0.003208 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2895.961247 B = 8726.588744 C =11288.661637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.092 3.908 3 N -0.599 5.599 4 C 0.119 3.881 5 C -0.034 4.034 6 C 0.239 3.761 7 N -0.497 5.497 8 C 0.505 3.495 9 O -0.576 6.576 10 C 0.110 3.890 11 N -0.747 5.747 12 C 0.153 3.847 13 C -0.129 4.129 14 C -0.160 4.160 15 C 0.064 3.936 16 F -0.156 7.156 17 C -0.248 4.248 18 C 0.076 3.924 19 O -0.220 6.220 20 C -0.407 4.407 21 H 0.095 0.905 22 C -0.019 4.019 23 N -0.914 5.914 24 Si 1.012 2.988 25 H -0.255 1.255 26 H -0.269 1.269 27 H -0.270 1.270 28 H 0.090 0.910 29 H 0.044 0.956 30 H 0.054 0.946 31 H 0.118 0.882 32 H 0.104 0.896 33 H 0.120 0.880 34 H 0.060 0.940 35 H 0.103 0.897 36 H 0.155 0.845 37 H 0.122 0.878 38 H 0.112 0.888 39 H 0.399 0.601 40 H 0.177 0.823 41 H 0.163 0.837 42 H 0.118 0.882 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.279 -20.677 -11.016 24.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.028 4.028 3 N -0.332 5.332 4 C -0.005 4.005 5 C -0.075 4.075 6 C -0.078 4.078 7 N -0.175 5.175 8 C 0.293 3.707 9 O -0.455 6.455 10 C -0.016 4.016 11 N -0.382 5.382 12 C 0.051 3.949 13 C -0.152 4.152 14 C -0.180 4.180 15 C 0.043 3.957 16 F -0.135 7.135 17 C -0.269 4.269 18 C 0.023 3.977 19 O -0.126 6.126 20 C -0.483 4.483 21 H 0.112 0.888 22 C -0.217 4.217 23 N -0.552 5.552 24 Si 0.832 3.168 25 H -0.179 1.179 26 H -0.194 1.194 27 H -0.195 1.195 28 H 0.109 0.891 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.136 0.864 32 H 0.122 0.878 33 H 0.138 0.862 34 H 0.079 0.921 35 H 0.121 0.879 36 H 0.173 0.827 37 H 0.140 0.860 38 H 0.130 0.870 39 H 0.234 0.766 40 H 0.195 0.805 41 H 0.181 0.819 42 H 0.136 0.864 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.735 -19.153 -12.900 23.794 hybrid contribution 0.349 1.557 1.360 2.097 sum -5.386 -17.596 -11.540 21.721 Atomic orbital electron populations 1.22251 0.95589 1.03619 1.01953 1.22108 0.94710 0.79459 1.06569 1.47934 1.65319 1.15977 1.03929 1.21329 0.94790 0.98635 0.85770 1.19819 0.99224 1.02513 0.85974 1.29446 0.91840 0.92261 0.94228 1.81281 1.10233 1.11421 1.14574 1.21006 0.76566 0.86157 0.86924 1.90806 1.46968 1.20203 1.87505 1.21364 1.03955 0.93529 0.82745 1.44354 1.75280 1.17319 1.01220 1.17409 1.01216 0.93490 0.82799 1.20497 1.04576 0.92595 0.97528 1.20855 1.05889 1.00695 0.90569 1.17392 1.05970 0.93280 0.79058 1.91381 1.94123 1.90071 1.37967 1.20829 1.11955 0.97317 0.96841 1.19180 0.98699 0.87078 0.92693 1.83896 1.74845 1.18775 1.35122 1.21709 1.48767 0.91471 0.86359 0.88779 1.26428 0.96336 0.97628 1.01339 1.70204 1.46165 1.16049 1.22776 0.84615 0.78485 0.77378 0.76303 1.17875 1.19388 1.19471 0.89128 0.93636 0.92701 0.86361 0.87824 0.86239 0.92093 0.87875 0.82703 0.86029 0.87021 0.76595 0.80536 0.81949 0.86448 0.92091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.75 10.24 71.98 0.74 -0.02 16 2 C 0.09 0.26 5.93 86.38 0.51 0.77 16 3 N -0.60 -7.24 2.47 -821.81 -2.03 -9.27 16 4 C 0.12 1.39 5.36 86.38 0.46 1.85 16 5 C -0.03 -0.33 6.03 28.79 0.17 -0.16 16 6 C 0.24 4.18 15.43 89.44 1.38 5.56 16 7 N -0.50 -12.47 18.54 20.01 0.37 -12.10 16 8 C 0.50 11.61 7.74 87.66 0.68 12.29 16 9 O -0.58 -20.73 15.25 -3.05 -0.05 -20.78 16 10 C 0.11 2.27 3.95 85.63 0.34 2.61 16 11 N -0.75 -26.46 5.70 -342.56 -1.95 -28.42 16 12 C 0.15 5.77 6.67 38.26 0.26 6.03 16 13 C -0.13 -3.49 9.31 22.38 0.21 -3.28 16 14 C -0.16 -4.59 10.02 22.33 0.22 -4.37 16 15 C 0.06 2.39 7.29 22.37 0.16 2.55 16 16 F -0.16 -5.71 17.26 44.97 0.78 -4.93 16 17 C -0.25 -11.20 9.14 22.41 0.20 -10.99 16 18 C 0.08 3.67 6.67 22.69 0.15 3.82 16 19 O -0.22 -12.88 9.00 -22.94 -0.21 -13.09 16 20 C -0.41 -23.90 9.49 67.91 0.64 -23.26 16 21 H 0.09 5.22 5.21 -2.91 -0.02 5.20 16 22 C -0.02 -1.12 5.49 84.82 0.47 -0.65 16 23 N -0.91 -56.77 13.67 21.61 0.30 -56.47 16 24 Si 1.01 44.29 29.55 68.60 2.03 46.32 16 25 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 26 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 27 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 28 H 0.09 0.07 8.14 -2.39 -0.02 0.05 16 29 H 0.04 0.37 7.22 -2.39 -0.02 0.35 16 30 H 0.05 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.12 -0.36 8.07 -2.39 -0.02 -0.38 16 32 H 0.10 0.00 6.44 -2.39 -0.02 -0.01 16 33 H 0.12 0.65 8.07 -2.39 -0.02 0.63 16 34 H 0.06 1.18 7.42 -2.39 -0.02 1.16 16 35 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.16 0.17 8.14 -2.38 -0.02 0.15 16 37 H 0.12 1.59 7.21 -2.39 -0.02 1.57 16 38 H 0.11 1.69 7.00 -2.39 -0.02 1.67 16 39 H 0.40 18.12 6.80 -92.71 -0.63 17.49 16 40 H 0.18 2.80 6.73 -2.91 -0.02 2.78 16 41 H 0.16 3.31 8.06 -2.91 -0.02 3.29 16 42 H 0.12 5.63 5.64 -2.91 -0.02 5.61 16 43 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -87.30 376.28 6.28 -81.02 By element: Atomic # 1 Polarization: 24.50 SS G_CDS: 0.44 Total: 24.95 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: 6.60 Total: -7.24 kcal Atomic # 7 Polarization: -102.93 SS G_CDS: -3.32 Total: -106.25 kcal Atomic # 8 Polarization: -33.61 SS G_CDS: -0.25 Total: -33.87 kcal Atomic # 9 Polarization: -5.71 SS G_CDS: 0.78 Total: -4.93 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -87.30 6.28 -81.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134213333.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.424 kcal (2) G-P(sol) polarization free energy of solvation -87.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds