Wall clock time and date at job start Tue Mar 31 2020 18:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36059 * 116.99751 * 2 1 4 4 C 1.38479 * 120.05980 * 359.72080 * 3 2 1 5 5 C 1.38286 * 120.04430 * 180.25610 * 4 3 2 6 6 C 1.38448 * 120.15255 * 0.04485 * 5 4 3 7 7 F 1.35098 * 119.94350 * 179.97438 * 6 5 4 8 8 C 1.38400 * 120.11183 * 359.95630 * 6 5 4 9 9 C 1.38719 * 119.95859 * 0.02562 * 8 6 5 10 10 N 1.39960 * 120.07932 * 179.97438 * 9 8 6 11 11 C 1.46498 * 119.99946 * 0.02562 * 10 9 8 12 12 C 1.50699 * 109.47210 * 180.02562 * 11 10 9 13 13 O 1.21282 * 119.99700 * 359.97438 * 12 11 10 14 14 N 1.34778 * 119.99993 * 180.02562 * 12 11 10 15 15 C 1.46497 * 119.99979 * 180.02562 * 14 12 11 16 16 C 1.50696 * 109.47462 * 89.99254 * 15 14 12 17 17 H 1.08005 * 119.99908 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00082 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99954 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99857 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47078 * 60.00165 * 20 18 16 22 22 H 1.48499 * 109.46984 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47389 * 300.00315 * 20 18 16 24 24 C 1.46496 * 119.99960 * 359.97438 * 14 12 11 25 25 C 1.53004 * 109.47026 * 90.00175 * 24 14 12 26 26 C 1.47199 * 109.46924 * 179.97438 * 25 24 14 27 27 N 9.33261 * 163.22151 * 32.30357 * 2 1 3 28 28 H 1.08998 * 109.46819 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47192 * 300.00371 * 1 2 3 30 30 H 1.09001 * 109.46710 * 59.99930 * 1 2 3 31 31 H 1.07999 * 119.97462 * 0.25870 * 4 3 2 32 32 H 1.08002 * 119.92419 * 180.02562 * 5 4 3 33 33 H 1.08006 * 120.02341 * 180.02562 * 8 6 5 34 34 H 0.96997 * 119.99940 * 180.02562 * 10 9 8 35 35 H 1.09004 * 109.46976 * 300.00773 * 11 10 9 36 36 H 1.09007 * 109.46907 * 60.00001 * 11 10 9 37 37 H 1.08997 * 109.47153 * 209.99562 * 15 14 12 38 38 H 1.09004 * 109.46877 * 329.99407 * 15 14 12 39 39 H 0.97002 * 119.99465 * 179.97438 * 19 18 16 40 40 H 1.08999 * 109.47353 * 210.00499 * 24 14 12 41 41 H 1.08997 * 109.47399 * 330.00567 * 24 14 12 42 42 H 1.08999 * 109.47318 * 300.00344 * 25 24 14 43 43 H 1.09001 * 109.46756 * 60.00475 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0467 1.2123 0.0000 4 6 1.2937 2.3744 -0.0058 5 6 1.9218 3.6064 -0.0112 6 6 3.3042 3.6822 -0.0117 7 9 3.9134 4.8880 -0.0174 8 6 4.0630 2.5248 -0.0059 9 6 3.4378 1.2866 -0.0001 10 7 4.2027 0.1145 0.0052 11 6 5.6655 0.1945 0.0053 12 6 6.2447 -1.1967 0.0109 13 8 5.5080 -2.1602 0.0149 14 7 7.5813 -1.3702 0.0124 15 6 8.1443 -2.7227 0.0173 16 6 8.3383 -3.1912 -1.4018 17 1 8.0694 -2.5459 -2.2251 18 6 8.8599 -4.4433 -1.6492 19 7 9.1877 -5.2289 -0.6467 20 14 9.1010 -5.0238 -3.4082 21 1 10.0304 -4.1028 -4.1104 22 1 9.6716 -6.3948 -3.4032 23 1 7.7920 -5.0355 -4.1095 24 6 8.4710 -0.2064 0.0081 25 6 8.7798 0.2048 1.4491 26 6 9.6743 1.3738 1.4448 27 7 10.3644 2.2771 1.4397 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 0.2151 2.3185 -0.0062 32 1 1.3326 4.5116 -0.0153 33 1 5.1414 2.5856 -0.0058 34 1 3.7643 -0.7507 0.0089 35 1 6.0005 0.7237 -0.8869 36 1 6.0000 0.7313 0.8931 37 1 9.1052 -2.7143 0.5317 38 1 7.4619 -3.3984 0.5330 39 1 9.5544 -6.1099 -0.8208 40 1 9.3990 -0.4603 -0.5042 41 1 7.9849 0.6206 -0.5094 42 1 7.8518 0.4587 1.9614 43 1 9.2660 -0.6223 1.9666 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155443396.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:52 Heat of formation + Delta-G solvation = -56.828133 kcal Electronic energy + Delta-G solvation = -28122.183022 eV Core-core repulsion = 23889.804730 eV Total energy + Delta-G solvation = -4232.378292 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.89812 -40.40830 -39.47559 -37.50688 -36.92751 -35.57549 -35.04056 -32.95393 -30.94957 -30.40780 -29.99952 -28.02560 -27.24826 -26.14020 -24.12447 -23.08723 -22.31657 -21.80600 -19.08594 -18.39432 -17.82293 -17.60103 -17.08658 -16.54852 -16.44857 -16.03327 -15.83996 -15.46251 -15.20900 -15.15970 -14.82839 -14.75416 -14.65582 -14.30319 -13.93145 -13.84632 -13.31142 -13.03197 -12.92442 -12.69294 -12.56753 -12.49365 -12.26922 -12.09195 -11.94666 -11.79722 -11.35691 -11.17877 -11.09846 -11.05709 -10.94530 -10.67156 -10.27198 -10.24079 -9.81148 -9.26835 -8.65476 -8.52699 -8.00519 -7.33268 -6.14807 -4.19963 1.07648 1.26927 2.67371 2.77821 3.01143 3.07592 3.19190 3.27053 3.32033 3.35382 3.50832 3.64617 4.10338 4.27024 4.36804 4.54374 4.76425 4.77640 4.91904 4.94900 4.97728 5.03579 5.13465 5.19281 5.20665 5.23015 5.29030 5.33262 5.46236 5.50090 5.74042 5.79422 5.98820 6.02229 6.07782 6.56858 6.72328 6.91326 7.22734 7.29911 7.34979 7.54183 7.74364 7.80418 8.08096 8.10373 8.65217 8.85427 9.45884 10.93325 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.009778 B = 0.003261 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2862.956302 B = 8584.923241 C =10642.847681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.315 6.315 3 C 0.045 3.955 4 C -0.135 4.135 5 C -0.182 4.182 6 C 0.114 3.886 7 F -0.142 7.142 8 C -0.213 4.213 9 C 0.234 3.766 10 N -0.719 5.719 11 C 0.098 3.902 12 C 0.503 3.497 13 O -0.526 6.526 14 N -0.591 5.591 15 C 0.245 3.755 16 C -0.533 4.533 17 H 0.058 0.942 18 C 0.064 3.936 19 N -0.893 5.893 20 Si 0.898 3.102 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.276 1.276 24 C 0.114 3.886 25 C -0.051 4.051 26 C 0.215 3.785 27 N -0.442 5.442 28 H 0.099 0.901 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.135 0.865 32 H 0.131 0.869 33 H 0.140 0.860 34 H 0.421 0.579 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.038 0.962 38 H 0.048 0.952 39 H 0.265 0.735 40 H 0.098 0.902 41 H 0.077 0.923 42 H 0.107 0.893 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.906 14.541 3.671 20.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.228 6.228 3 C -0.003 4.003 4 C -0.155 4.155 5 C -0.203 4.203 6 C 0.094 3.906 7 F -0.121 7.121 8 C -0.238 4.238 9 C 0.128 3.872 10 N -0.351 5.351 11 C -0.031 4.031 12 C 0.289 3.711 13 O -0.402 6.402 14 N -0.322 5.322 15 C 0.127 3.873 16 C -0.571 4.571 17 H 0.076 0.924 18 C -0.139 4.139 19 N -0.531 5.531 20 Si 0.725 3.275 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.202 1.202 24 C -0.013 4.013 25 C -0.092 4.092 26 C -0.103 4.103 27 N -0.119 5.119 28 H 0.118 0.882 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.153 0.847 32 H 0.149 0.851 33 H 0.158 0.842 34 H 0.261 0.739 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.055 0.945 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.117 0.883 41 H 0.095 0.905 42 H 0.125 0.875 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -12.850 14.976 3.711 20.079 hybrid contribution -0.261 -0.636 -0.975 1.193 sum -13.111 14.339 2.736 19.622 Atomic orbital electron populations 1.23016 0.78409 1.03982 1.00989 1.86075 1.21213 1.25920 1.89628 1.18434 0.90209 0.85243 1.06418 1.20769 0.99819 0.90819 1.04086 1.20591 0.92439 0.98382 1.08907 1.17215 0.90548 0.79891 1.02912 1.91480 1.83689 1.42880 1.94020 1.20341 1.00592 0.89367 1.13462 1.16816 0.87098 0.87039 0.96229 1.44397 1.03809 1.06578 1.80360 1.21292 0.81860 0.96917 1.02998 1.20144 0.83163 0.90044 0.77766 1.90704 1.58402 1.41753 1.49322 1.48171 1.04093 1.08849 1.71129 1.19397 0.94245 0.75849 0.97828 1.21359 1.42692 1.00898 0.92171 0.92361 1.24907 0.95208 0.96317 0.97430 1.69904 1.42928 1.09540 1.30751 0.86566 0.78528 0.77818 0.84577 1.20192 1.21159 1.20159 1.21377 0.97298 0.89264 0.93317 1.19888 0.97021 0.90937 1.01371 1.29081 0.93800 0.94172 0.93238 1.81253 1.10402 1.11791 1.08470 0.88237 0.92842 0.92828 0.84680 0.85082 0.84185 0.73883 0.89387 0.89583 0.94453 0.93434 0.92531 0.88342 0.90508 0.87543 0.86337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.31 -3.70 9.74 -19.93 -0.19 -3.89 16 3 C 0.05 0.53 6.70 -39.10 -0.26 0.27 16 4 C -0.14 -1.30 9.03 -39.47 -0.36 -1.65 16 5 C -0.18 -1.80 10.02 -39.49 -0.40 -2.19 16 6 C 0.11 1.29 7.29 -39.44 -0.29 1.01 16 7 F -0.14 -1.69 17.26 2.25 0.04 -1.65 16 8 C -0.21 -2.44 9.29 -39.34 -0.37 -2.80 16 9 C 0.23 2.92 6.67 -83.57 -0.56 2.37 16 10 N -0.72 -9.79 5.70 -59.67 -0.34 -10.13 16 11 C 0.10 1.22 3.95 -5.20 -0.02 1.20 16 12 C 0.50 8.66 7.74 -10.99 -0.09 8.58 16 13 O -0.53 -11.47 15.25 5.56 0.08 -11.39 16 14 N -0.59 -10.08 2.46 -175.07 -0.43 -10.51 16 15 C 0.25 5.56 5.16 -5.20 -0.03 5.53 16 16 C -0.53 -13.80 9.39 -34.44 -0.32 -14.13 16 17 H 0.06 1.51 7.81 -52.48 -0.41 1.10 16 18 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -24.96 13.29 55.43 0.74 -24.22 16 20 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 21 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 22 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 24 C 0.11 1.39 5.17 -4.04 -0.02 1.36 16 25 C -0.05 -0.49 6.03 -29.52 -0.18 -0.66 16 26 C 0.22 2.47 15.44 -20.74 -0.32 2.15 16 27 N -0.44 -6.33 18.54 42.18 0.78 -5.55 16 28 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.32 7.67 -51.93 -0.40 -0.08 16 30 H 0.05 0.33 7.65 -51.93 -0.40 -0.07 16 31 H 0.14 0.93 6.29 -52.49 -0.33 0.60 16 32 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 33 H 0.14 1.40 6.74 -52.48 -0.35 1.05 16 34 H 0.42 6.54 6.80 -40.82 -0.28 6.26 16 35 H 0.09 0.97 7.21 -51.93 -0.37 0.60 16 36 H 0.09 0.83 7.00 -51.92 -0.36 0.47 16 37 H 0.04 0.84 8.07 -51.93 -0.42 0.42 16 38 H 0.05 1.24 7.42 -51.93 -0.39 0.85 16 39 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 40 H 0.10 1.30 8.07 -51.93 -0.42 0.88 16 41 H 0.08 0.75 6.44 -51.93 -0.33 0.42 16 42 H 0.11 0.81 7.22 -51.93 -0.37 0.43 16 43 H 0.12 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 377.29 15.07 5.69 5.69 Total: -1.00 -32.72 377.29 -6.20 -38.92 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -5.24 Total: 3.01 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: -2.30 Total: 3.87 kcal Atomic # 7 Polarization: -51.15 SS G_CDS: 0.75 Total: -50.40 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: -0.11 Total: -15.28 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.72 -6.20 -38.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155443396.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.909 kcal (2) G-P(sol) polarization free energy of solvation -32.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds