Wall clock time and date at job start Tue Mar 31 2020 18:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46902 * 110.99669 * 2 1 4 4 C 1.53000 * 109.46966 * 76.26982 * 3 2 1 5 5 C 1.53005 * 109.46613 * 179.97438 * 4 3 2 6 6 S 1.81008 * 109.46800 * 180.02562 * 5 4 3 7 7 C 1.76203 * 99.99899 * 180.02562 * 6 5 4 8 8 H 1.08002 * 119.99695 * 359.97438 * 7 6 5 9 9 C 1.38795 * 119.99812 * 180.02562 * 7 6 5 10 10 N 1.31634 * 120.00123 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00002 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46894 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47352 * 119.99455 * 11 9 7 14 14 H 1.48504 * 109.46938 * 239.99816 * 11 9 7 15 15 C 1.46900 * 110.99948 * 236.04430 * 2 1 3 16 16 H 1.08999 * 109.46652 * 92.20298 * 15 2 1 17 17 C 1.52993 * 109.47317 * 332.20175 * 15 2 1 18 18 C 1.53001 * 109.47028 * 299.99985 * 17 15 2 19 19 C 1.53008 * 109.46998 * 300.00088 * 18 17 15 20 20 C 1.52992 * 109.46953 * 59.99947 * 19 18 17 21 21 C 1.52998 * 109.46743 * 212.19627 * 15 2 1 22 22 H 1.09006 * 109.47138 * 179.97438 * 21 15 2 23 23 S 1.81395 * 109.47554 * 300.00150 * 21 15 2 24 24 C 1.81404 * 101.92306 * 189.85448 * 23 21 15 25 25 O 1.42097 * 108.57857 * 304.34674 * 23 21 15 26 26 O 1.42106 * 108.57696 * 75.37159 * 23 21 15 27 27 H 1.08998 * 109.47258 * 53.79698 * 1 2 3 28 28 H 1.09001 * 109.46770 * 173.79212 * 1 2 3 29 29 H 1.08994 * 109.47443 * 293.79104 * 1 2 3 30 30 H 1.08994 * 109.47006 * 316.26810 * 3 2 1 31 31 H 1.08996 * 109.46995 * 196.26715 * 3 2 1 32 32 H 1.08994 * 109.47398 * 60.00068 * 4 3 2 33 33 H 1.08996 * 109.47045 * 299.99702 * 4 3 2 34 34 H 1.08993 * 109.47541 * 60.00329 * 5 4 3 35 35 H 1.08996 * 109.47190 * 299.99636 * 5 4 3 36 36 H 0.96995 * 119.99481 * 180.02562 * 10 9 7 37 37 H 1.08994 * 109.47440 * 60.00124 * 17 15 2 38 38 H 1.09006 * 109.47158 * 180.02562 * 17 15 2 39 39 H 1.08996 * 109.47306 * 60.00055 * 18 17 15 40 40 H 1.09004 * 109.46984 * 180.02562 * 18 17 15 41 41 H 1.08999 * 109.47073 * 180.02562 * 19 18 17 42 42 H 1.09005 * 109.46934 * 299.99936 * 19 18 17 43 43 H 1.09005 * 109.47310 * 60.00218 * 20 19 18 44 44 H 1.09003 * 109.46980 * 179.97438 * 20 19 18 45 45 H 1.09005 * 109.46701 * 60.00071 * 24 23 21 46 46 H 1.08996 * 109.46967 * 180.02562 * 24 23 21 47 47 H 1.08996 * 109.47381 * 300.00464 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.8585 1.9703 1.4013 5 6 2.4073 3.3985 1.4013 6 16 2.2461 4.1067 3.0593 7 6 2.9330 5.7046 2.7776 8 1 3.2927 5.9722 1.7950 9 6 3.0126 6.6191 3.8186 10 7 2.5745 6.2928 5.0163 11 14 3.7414 8.3130 3.5202 12 1 4.1578 8.4293 2.0995 13 1 2.7237 9.3505 3.8248 14 1 4.9229 8.5053 4.3991 15 6 1.9955 -0.7660 -1.1376 16 1 2.1625 -0.0957 -1.9807 17 6 0.9870 -1.8453 -1.5361 18 6 0.7525 -2.7861 -0.3525 19 6 2.0749 -3.4453 0.0448 20 6 3.0833 -2.3660 0.4432 21 6 3.3178 -1.4251 -0.7403 22 1 3.7083 -1.9939 -1.5842 23 16 4.5135 -0.1454 -0.2678 24 6 6.0512 -1.0989 -0.1376 25 8 4.6408 0.7745 -1.3434 26 8 4.1709 0.3398 1.0232 27 1 -0.3634 0.6070 -0.8292 28 1 -0.3633 -1.0217 -0.1111 29 1 -0.3634 0.4145 0.9403 30 1 1.4323 1.9767 -0.7104 31 1 3.0466 1.3572 -0.2879 32 1 2.4215 1.3650 2.1117 33 1 0.8073 1.9846 1.6891 34 1 1.8446 4.0040 0.6910 35 1 3.4585 3.3838 1.1137 36 1 2.6299 6.9321 5.7437 37 1 0.0450 -1.3758 -1.8191 38 1 1.3779 -2.4140 -2.3799 39 1 0.3619 -2.2178 0.4916 40 1 0.0344 -3.5554 -0.6366 41 1 1.9078 -4.1159 0.8877 42 1 2.4656 -4.0137 -0.7993 43 1 2.6927 -1.7976 1.2874 44 1 4.0253 -2.8356 0.7267 45 1 6.2755 -1.5596 -1.0997 46 1 6.8674 -0.4349 0.1469 47 1 5.9344 -1.8752 0.6185 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177011144.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:21 Heat of formation + Delta-G solvation = -81.613399 kcal Electronic energy + Delta-G solvation = -26601.238670 eV Core-core repulsion = 23037.149984 eV Total energy + Delta-G solvation = -3564.088685 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.138 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.92380 -37.93016 -37.48711 -36.57604 -34.62759 -33.95165 -32.52172 -30.65643 -30.31475 -28.05299 -27.58149 -25.58347 -23.92432 -22.69303 -22.16528 -20.35457 -19.72704 -19.47158 -18.07966 -17.70441 -16.91377 -16.87995 -16.78456 -16.15684 -15.98848 -15.89725 -15.56210 -15.11398 -14.85657 -14.47764 -14.30640 -14.01363 -13.88715 -13.77331 -13.59859 -13.28675 -13.22561 -13.05384 -12.96404 -12.92524 -12.89993 -12.71531 -12.52500 -12.35418 -12.28800 -12.24326 -11.91669 -11.67284 -11.42262 -11.37134 -11.19544 -11.15220 -11.08143 -10.63162 -10.34232 -9.34622 -8.66580 -8.38000 -6.14257 -0.87688 1.29269 1.36842 1.47537 1.73259 1.92361 2.27055 2.71228 2.80152 2.95049 3.16014 3.32418 3.50744 3.68404 3.83319 3.90097 4.04705 4.07835 4.14731 4.25147 4.27664 4.31587 4.35597 4.41109 4.51248 4.52493 4.59113 4.66452 4.69651 4.73661 4.81776 4.89704 4.95763 5.03261 5.10532 5.19419 5.28957 5.31944 5.37967 5.38155 5.41622 5.50179 5.67920 5.95669 6.03442 6.17408 7.03135 8.72055 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.018108 B = 0.003211 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.923995 B = 8717.189458 C = 9491.288770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.001 3.999 2 N -0.536 5.536 3 C 0.054 3.946 4 C -0.070 4.070 5 C -0.088 4.088 6 S -0.185 6.185 7 C -0.543 4.543 8 H 0.067 0.933 9 C 0.016 3.984 10 N -0.906 5.906 11 Si 0.997 3.003 12 H -0.266 1.266 13 H -0.267 1.267 14 H -0.268 1.268 15 C 0.086 3.914 16 H 0.054 0.946 17 C -0.110 4.110 18 C -0.130 4.130 19 C -0.103 4.103 20 C -0.105 4.105 21 C -0.534 4.534 22 H 0.173 0.827 23 S 2.378 3.622 24 C -0.648 4.648 25 O -0.996 6.996 26 O -0.956 6.956 27 H 0.028 0.972 28 H 0.118 0.882 29 H 0.061 0.939 30 H 0.037 0.963 31 H 0.052 0.948 32 H 0.079 0.921 33 H 0.063 0.937 34 H 0.055 0.945 35 H 0.046 0.954 36 H 0.273 0.727 37 H 0.076 0.924 38 H 0.091 0.909 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.075 0.925 44 H 0.092 0.908 45 H 0.156 0.844 46 H 0.126 0.874 47 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.622 -26.455 -16.085 30.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 N -0.260 5.260 3 C -0.076 4.076 4 C -0.109 4.109 5 C -0.237 4.237 6 S 0.043 5.957 7 C -0.691 4.691 8 H 0.085 0.915 9 C -0.189 4.189 10 N -0.542 5.542 11 Si 0.818 3.182 12 H -0.190 1.190 13 H -0.192 1.192 14 H -0.193 1.193 15 C -0.024 4.024 16 H 0.072 0.928 17 C -0.149 4.149 18 C -0.167 4.167 19 C -0.142 4.142 20 C -0.143 4.143 21 C -0.646 4.646 22 H 0.190 0.810 23 S 2.568 3.432 24 C -0.800 4.800 25 O -0.993 6.993 26 O -0.953 6.953 27 H 0.047 0.953 28 H 0.136 0.864 29 H 0.080 0.920 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.110 0.890 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.092 0.908 42 H 0.098 0.902 43 H 0.094 0.906 44 H 0.111 0.889 45 H 0.174 0.826 46 H 0.145 0.855 47 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 0.222 -26.121 -14.374 29.815 hybrid contribution 0.954 1.792 -1.834 2.736 sum 1.175 -24.329 -16.208 29.257 Atomic orbital electron populations 1.23008 0.85816 1.04587 1.01135 1.61993 1.09800 1.11793 1.42432 1.22430 0.98897 0.89509 0.96714 1.21016 1.00620 0.91765 0.97499 1.23143 1.01716 0.99849 0.99029 1.84499 1.82143 1.15844 1.13176 1.23082 1.47296 0.99506 0.99170 0.91481 1.26092 0.95308 1.03555 0.93951 1.70166 1.45077 1.37238 1.01724 0.84943 0.78224 0.76355 0.78663 1.19037 1.19153 1.19316 1.21528 0.93883 0.95738 0.91236 0.92800 1.21768 0.97946 0.95689 0.99472 1.21803 0.98305 0.98586 0.98039 1.21410 0.94321 0.96396 1.02048 1.21415 1.01994 0.96113 0.94791 1.30013 1.10005 1.14174 1.10448 0.80985 1.08963 0.80018 0.79071 0.75103 1.30162 1.19569 1.16262 1.13986 1.93533 1.87062 1.61261 1.57482 1.93675 1.82706 1.78384 1.40500 0.95303 0.86443 0.92029 0.94512 0.93045 0.90197 0.91829 0.92616 0.93532 0.91836 0.90519 0.89002 0.91120 0.90356 0.90825 0.90178 0.90590 0.88921 0.82586 0.85545 0.82620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.03 7.70 127.69 0.98 1.01 16 2 N -0.54 -13.28 3.22 -897.07 -2.89 -16.17 16 3 C 0.05 1.82 3.59 86.30 0.31 2.13 16 4 C -0.07 -2.85 4.90 30.60 0.15 -2.70 16 5 C -0.09 -4.32 5.67 71.98 0.41 -3.91 16 6 S -0.19 -11.00 21.44 -56.49 -1.21 -12.21 16 7 C -0.54 -34.21 9.50 67.95 0.65 -33.57 16 8 H 0.07 4.14 7.80 -2.91 -0.02 4.12 16 9 C 0.02 0.96 5.49 84.86 0.47 1.42 16 10 N -0.91 -57.33 13.22 21.65 0.29 -57.04 16 11 Si 1.00 46.63 29.55 68.60 2.03 48.66 16 12 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 13 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 14 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 15 C 0.09 1.58 2.18 44.91 0.10 1.68 16 16 H 0.05 1.12 7.75 -2.39 -0.02 1.10 16 17 C -0.11 -1.27 4.86 30.59 0.15 -1.12 16 18 C -0.13 -1.37 5.14 30.60 0.16 -1.21 16 19 C -0.10 -0.92 5.92 30.59 0.18 -0.74 16 20 C -0.10 -1.33 4.80 30.59 0.15 -1.18 16 21 C -0.53 -7.70 2.32 30.59 0.07 -7.63 16 22 H 0.17 0.97 8.14 -2.39 -0.02 0.95 16 23 S 2.38 54.71 3.42 -56.49 -0.19 54.52 16 24 C -0.65 -7.78 10.42 113.37 1.18 -6.60 16 25 O -1.00 -31.15 16.54 -127.37 -2.11 -33.26 16 26 O -0.96 -31.39 13.37 -127.37 -1.70 -33.09 16 27 H 0.03 0.59 7.94 -2.39 -0.02 0.57 16 28 H 0.12 1.77 3.64 -2.39 -0.01 1.76 16 29 H 0.06 1.46 7.14 -2.39 -0.02 1.44 16 30 H 0.04 1.21 7.86 -2.39 -0.02 1.19 16 31 H 0.05 1.83 2.94 -16.61 -0.05 1.78 16 32 H 0.08 3.51 6.85 -2.39 -0.02 3.49 16 33 H 0.06 2.48 7.09 -2.39 -0.02 2.47 16 34 H 0.06 2.66 8.14 -2.40 -0.02 2.64 16 35 H 0.05 2.37 8.14 -2.40 -0.02 2.36 16 36 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 37 H 0.08 0.86 6.51 -2.39 -0.02 0.85 16 38 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 39 H 0.07 0.99 5.56 -2.39 -0.01 0.98 16 40 H 0.08 0.58 8.14 -2.38 -0.02 0.57 16 41 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.08 0.41 8.14 -2.38 -0.02 0.39 16 43 H 0.08 1.47 7.34 -2.38 -0.02 1.45 16 44 H 0.09 0.64 7.09 -2.39 -0.02 0.62 16 45 H 0.16 0.84 8.14 -2.39 -0.02 0.82 16 46 H 0.13 1.70 8.14 -2.39 -0.02 1.68 16 47 H 0.16 1.06 7.22 -2.39 -0.02 1.04 16 Total: -1.00 -86.23 368.91 0.06 -86.17 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: 0.91 Total: 14.84 kcal Atomic # 6 Polarization: -57.36 SS G_CDS: 4.95 Total: -52.42 kcal Atomic # 7 Polarization: -70.61 SS G_CDS: -2.61 Total: -73.21 kcal Atomic # 8 Polarization: -62.54 SS G_CDS: -3.81 Total: -66.35 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal Atomic # 16 Polarization: 43.71 SS G_CDS: -1.40 Total: 42.30 kcal Total: -86.23 0.06 -86.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177011144.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.556 kcal (2) G-P(sol) polarization free energy of solvation -86.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds