Wall clock time and date at job start Tue Mar 31 2020 18:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46894 * 111.00484 * 2 1 4 4 C 1.52997 * 109.47077 * 66.04300 * 3 2 1 5 5 C 1.52999 * 109.47229 * 180.02562 * 4 3 2 6 6 S 1.81001 * 109.47350 * 180.02562 * 5 4 3 7 7 C 1.76194 * 100.00217 * 179.97438 * 6 5 4 8 8 H 1.07994 * 120.00199 * 0.02562 * 7 6 5 9 9 C 1.38807 * 120.00122 * 179.97438 * 7 6 5 10 10 N 1.31630 * 119.99938 * 0.02562 * 9 7 6 11 11 Si 1.86793 * 119.99949 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47494 * 60.00108 * 11 9 7 13 13 H 1.48501 * 109.47232 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47066 * 299.99932 * 11 9 7 15 15 C 1.46897 * 111.00072 * 236.04245 * 2 1 3 16 16 H 1.08998 * 109.47436 * 310.25807 * 15 2 1 17 17 C 1.53002 * 109.47113 * 70.25689 * 15 2 1 18 18 C 1.53005 * 109.47240 * 179.97438 * 17 15 2 19 19 C 1.53002 * 109.47138 * 300.00380 * 18 17 15 20 20 C 1.52998 * 109.47090 * 60.00149 * 19 18 17 21 21 C 1.52999 * 109.46822 * 299.99448 * 20 19 18 22 22 H 1.09000 * 109.47863 * 299.99958 * 21 20 19 23 23 S 1.81405 * 109.47031 * 180.02562 * 21 20 19 24 24 C 1.81396 * 101.92093 * 60.71200 * 23 21 20 25 25 O 1.42093 * 108.58165 * 175.20017 * 23 21 20 26 26 O 1.42101 * 108.57608 * 306.22457 * 23 21 20 27 27 H 1.08996 * 109.47018 * 177.34680 * 1 2 3 28 28 H 1.08996 * 109.46715 * 57.35077 * 1 2 3 29 29 H 1.08999 * 109.47178 * 297.35419 * 1 2 3 30 30 H 1.09003 * 109.47499 * 186.04307 * 3 2 1 31 31 H 1.09000 * 109.47122 * 306.04559 * 3 2 1 32 32 H 1.08998 * 109.47341 * 300.00625 * 4 3 2 33 33 H 1.08999 * 109.47384 * 59.99855 * 4 3 2 34 34 H 1.09003 * 109.47205 * 299.99919 * 5 4 3 35 35 H 1.09000 * 109.47264 * 60.00078 * 5 4 3 36 36 H 0.96995 * 120.00365 * 179.97438 * 10 9 7 37 37 H 1.08998 * 109.47259 * 300.00187 * 17 15 2 38 38 H 1.09001 * 109.46449 * 60.00410 * 17 15 2 39 39 H 1.08999 * 109.46699 * 60.00383 * 18 17 15 40 40 H 1.08999 * 109.46916 * 180.02562 * 18 17 15 41 41 H 1.09004 * 109.46752 * 180.02562 * 19 18 17 42 42 H 1.08998 * 109.46924 * 299.99974 * 19 18 17 43 43 H 1.08999 * 109.47468 * 59.99555 * 20 19 18 44 44 H 1.08998 * 109.46984 * 179.97438 * 20 19 18 45 45 H 1.09003 * 109.47043 * 60.00038 * 24 23 21 46 46 H 1.09001 * 109.47146 * 180.02562 * 24 23 21 47 47 H 1.08999 * 109.47250 * 300.00371 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3713 0.0000 4 6 1.6316 2.0574 1.3182 5 6 2.1794 3.4859 1.3180 6 16 1.7495 4.2973 2.8778 7 6 2.4822 5.8776 2.6128 8 1 3.0006 6.0843 1.6882 9 6 2.3923 6.8573 3.5920 10 7 1.7600 6.6056 4.7187 11 14 3.1685 8.5329 3.3107 12 1 2.5598 9.1658 2.1132 13 1 2.9341 9.3927 4.4986 14 1 4.6292 8.3722 3.0972 15 6 1.9955 -0.7660 -1.1375 16 1 1.5057 -1.7389 -1.1782 17 6 1.7233 -0.0034 -2.4357 18 6 2.2722 -0.8009 -3.6204 19 6 3.7802 -0.9953 -3.4496 20 6 4.0523 -1.7580 -2.1515 21 6 3.5035 -0.9604 -0.9668 22 1 3.9929 0.0126 -0.9258 23 16 3.8267 -1.8644 0.5724 24 6 5.6382 -1.9579 0.5787 25 8 3.4112 -1.0586 1.6665 26 8 3.3058 -3.1801 0.4426 27 1 -0.3633 -1.0265 -0.0476 28 1 -0.3632 0.5544 -0.8653 29 1 -0.3633 0.4722 0.9127 30 1 3.0799 1.3443 -0.1082 31 1 1.5613 1.9273 -0.8309 32 1 0.5473 2.0844 1.4265 33 1 2.0658 1.5015 2.1492 34 1 3.2637 3.4592 1.2096 35 1 1.7448 4.0416 0.4871 36 1 1.6974 7.2900 5.4031 37 1 0.6491 0.1355 -2.5571 38 1 2.2132 0.9695 -2.3949 39 1 1.7827 -1.7740 -3.6613 40 1 2.0787 -0.2573 -4.5452 41 1 4.1713 -1.5631 -4.2939 42 1 4.2696 -0.0222 -3.4087 43 1 3.5628 -2.7311 -2.1924 44 1 5.1265 -1.8969 -2.0300 45 1 6.0541 -0.9504 0.5790 46 1 5.9715 -2.4893 1.4701 47 1 5.9776 -2.4907 -0.3096 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177011156.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:24 Heat of formation + Delta-G solvation = -83.714804 kcal Electronic energy + Delta-G solvation = -25993.775268 eV Core-core repulsion = 22429.595458 eV Total energy + Delta-G solvation = -3564.179809 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.138 amu Computer time = 2.22 seconds Orbital eigenvalues (eV) -39.94423 -37.03150 -36.36511 -35.86535 -32.81944 -32.36517 -31.70611 -29.82571 -29.46082 -26.85715 -25.54128 -24.54023 -23.45885 -21.75927 -21.09175 -19.53309 -18.78306 -17.44712 -17.14679 -16.34002 -16.04014 -15.67019 -15.33421 -15.07818 -14.76632 -14.69621 -14.33005 -14.10990 -13.94951 -13.71296 -13.47376 -13.36646 -12.99315 -12.83947 -12.63699 -12.15206 -11.96639 -11.92046 -11.87316 -11.83318 -11.74489 -11.47500 -11.38627 -11.23728 -11.02186 -11.01191 -10.96058 -10.72305 -10.65200 -10.54305 -10.25201 -10.04122 -9.47584 -9.00464 -8.31942 -8.21216 -6.45128 -6.17430 -3.86730 -0.06345 2.71040 3.24084 3.25380 3.30164 3.51337 3.57902 3.72552 3.94153 4.16401 4.27729 4.31544 4.46837 4.59416 4.63401 4.67102 4.83436 4.92486 4.96464 5.01895 5.15560 5.17946 5.22513 5.33404 5.34400 5.42473 5.46078 5.49963 5.56967 5.63811 5.65416 5.68245 5.72530 5.82379 5.85634 5.94233 6.00431 6.04230 6.17569 6.44634 6.71705 6.86425 6.98185 7.09937 7.64498 8.41023 9.28245 10.90683 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.015902 B = 0.002844 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.320407 B = 9842.156674 C =10255.831071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.538 5.538 3 C 0.061 3.939 4 C -0.097 4.097 5 C -0.111 4.111 6 S -0.129 6.129 7 C -0.517 4.517 8 H 0.070 0.930 9 C 0.071 3.929 10 N -0.869 5.869 11 Si 0.917 3.083 12 H -0.275 1.275 13 H -0.283 1.283 14 H -0.274 1.274 15 C 0.102 3.898 16 H 0.096 0.904 17 C -0.145 4.145 18 C -0.117 4.117 19 C -0.112 4.112 20 C -0.108 4.108 21 C -0.568 4.568 22 H 0.138 0.862 23 S 2.429 3.571 24 C -0.671 4.671 25 O -0.898 6.898 26 O -0.945 6.945 27 H 0.066 0.934 28 H 0.029 0.971 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.036 0.964 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.267 0.733 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.084 0.916 44 H 0.076 0.924 45 H 0.128 0.872 46 H 0.127 0.873 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.959 -19.450 -17.616 26.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.260 5.260 3 C -0.068 4.068 4 C -0.136 4.136 5 C -0.261 4.261 6 S 0.099 5.901 7 C -0.665 4.665 8 H 0.088 0.912 9 C -0.138 4.138 10 N -0.505 5.505 11 Si 0.744 3.256 12 H -0.200 1.200 13 H -0.208 1.208 14 H -0.200 1.200 15 C -0.008 4.008 16 H 0.114 0.886 17 C -0.185 4.185 18 C -0.155 4.155 19 C -0.151 4.151 20 C -0.146 4.146 21 C -0.677 4.677 22 H 0.156 0.844 23 S 2.609 3.391 24 C -0.818 4.818 25 O -0.895 6.895 26 O -0.942 6.942 27 H 0.085 0.915 28 H 0.048 0.952 29 H 0.100 0.900 30 H 0.087 0.913 31 H 0.055 0.945 32 H 0.083 0.917 33 H 0.104 0.896 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.103 0.897 44 H 0.094 0.906 45 H 0.146 0.854 46 H 0.145 0.855 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 3.893 -20.320 -15.426 25.807 hybrid contribution 1.619 2.416 -2.552 3.869 sum 5.513 -17.904 -17.978 25.964 Atomic orbital electron populations 1.22451 0.86479 1.01827 1.01888 1.62285 1.08854 1.15351 1.39534 1.22225 0.99588 0.86836 0.98103 1.21308 1.01281 0.93823 0.97145 1.23228 1.02127 0.97729 1.02987 1.84685 1.74220 1.12958 1.18230 1.22661 1.40597 0.97681 1.05600 0.91155 1.25004 0.95276 0.98942 0.94558 1.70015 1.40027 1.34386 1.06082 0.86247 0.79563 0.82046 0.77784 1.20022 1.20839 1.19991 1.21420 0.90136 0.99016 0.90234 0.88597 1.22166 1.01593 1.00021 0.94735 1.21496 0.95599 1.00515 0.97923 1.21463 0.96632 1.00576 0.96401 1.21437 1.00790 0.99022 0.93383 1.30327 1.04760 1.13876 1.18701 0.84418 1.07910 0.77508 0.76110 0.77546 1.30466 1.28627 1.11511 1.11227 1.93669 1.78529 1.69621 1.47708 1.93549 1.76902 1.37056 1.86737 0.91549 0.95198 0.89989 0.91251 0.94535 0.91736 0.89610 0.92334 0.92646 0.92296 0.91132 0.90914 0.91682 0.91747 0.91367 0.91550 0.89712 0.90594 0.85368 0.85451 0.85806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 47. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 8.94 60.07 0.54 0.78 16 2 N -0.54 -6.60 3.33 -234.89 -0.78 -7.38 16 3 C 0.06 0.82 3.90 -3.83 -0.01 0.81 16 4 C -0.10 -1.69 5.14 -26.73 -0.14 -1.82 16 5 C -0.11 -2.31 5.67 37.16 0.21 -2.10 16 6 S -0.13 -3.48 21.44 -107.50 -2.30 -5.79 16 7 C -0.52 -15.09 9.50 30.94 0.29 -14.79 16 8 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 9 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 10 N -0.87 -26.43 13.22 55.49 0.73 -25.70 16 11 Si 0.92 21.77 29.55 -169.99 -5.02 16.74 16 12 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 13 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 14 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 15 C 0.10 0.98 1.63 -67.71 -0.11 0.87 16 16 H 0.10 0.90 7.97 -51.93 -0.41 0.48 16 17 C -0.15 -1.20 4.46 -26.73 -0.12 -1.32 16 18 C -0.12 -0.77 5.92 -26.73 -0.16 -0.93 16 19 C -0.11 -0.64 5.92 -26.73 -0.16 -0.80 16 20 C -0.11 -0.63 4.96 -26.73 -0.13 -0.77 16 21 C -0.57 -4.61 1.90 -26.73 -0.05 -4.66 16 22 H 0.14 0.98 6.37 -51.92 -0.33 0.65 16 23 S 2.43 24.73 4.77 -107.50 -0.51 24.22 16 24 C -0.67 -4.33 10.19 101.05 1.03 -3.30 16 25 O -0.90 -13.23 16.95 -57.83 -0.98 -14.21 16 26 O -0.95 -12.14 17.88 -57.83 -1.03 -13.18 16 27 H 0.07 0.66 8.00 -51.93 -0.42 0.24 16 28 H 0.03 0.30 6.89 -51.93 -0.36 -0.05 16 29 H 0.08 1.02 6.60 -51.93 -0.34 0.67 16 30 H 0.07 0.86 6.09 -51.93 -0.32 0.55 16 31 H 0.04 0.47 6.80 -51.93 -0.35 0.11 16 32 H 0.06 1.12 6.61 -51.93 -0.34 0.78 16 33 H 0.09 1.66 8.14 -51.93 -0.42 1.23 16 34 H 0.06 1.19 8.14 -51.91 -0.42 0.77 16 35 H 0.05 1.12 8.14 -51.92 -0.42 0.70 16 36 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 37 H 0.07 0.59 6.84 -51.93 -0.36 0.24 16 38 H 0.07 0.65 6.55 -51.93 -0.34 0.31 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.08 0.50 8.04 -51.93 -0.42 0.08 16 44 H 0.08 0.27 6.58 -51.93 -0.34 -0.07 16 45 H 0.13 0.67 8.14 -51.92 -0.42 0.25 16 46 H 0.13 0.79 8.14 -51.92 -0.42 0.36 16 47 H 0.12 0.50 6.89 -51.92 -0.36 0.14 16 LS Contribution 381.74 15.07 5.75 5.75 Total: -1.00 -36.57 381.74 -11.09 -47.66 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -8.04 Total: -2.03 kcal Atomic # 6 Polarization: -27.19 SS G_CDS: 1.09 Total: -26.09 kcal Atomic # 7 Polarization: -33.03 SS G_CDS: -0.05 Total: -33.07 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: -2.01 Total: -27.39 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: 21.25 SS G_CDS: -2.82 Total: 18.43 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.57 -11.09 -47.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177011156.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.053 kcal (2) G-P(sol) polarization free energy of solvation -36.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.22 seconds