Wall clock time and date at job start Tue Mar 31 2020 18:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46894 * 111.00484 * 2 1 4 4 C 1.52997 * 109.47077 * 66.04300 * 3 2 1 5 5 C 1.52999 * 109.47229 * 180.02562 * 4 3 2 6 6 S 1.81001 * 109.47350 * 180.02562 * 5 4 3 7 7 C 1.76194 * 100.00217 * 179.97438 * 6 5 4 8 8 H 1.07994 * 120.00199 * 0.02562 * 7 6 5 9 9 C 1.38807 * 120.00122 * 179.97438 * 7 6 5 10 10 N 1.31630 * 119.99938 * 0.02562 * 9 7 6 11 11 Si 1.86793 * 119.99949 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47494 * 60.00108 * 11 9 7 13 13 H 1.48501 * 109.47232 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47066 * 299.99932 * 11 9 7 15 15 C 1.46897 * 111.00072 * 236.04245 * 2 1 3 16 16 H 1.08998 * 109.47436 * 310.25807 * 15 2 1 17 17 C 1.53002 * 109.47113 * 70.25689 * 15 2 1 18 18 C 1.53005 * 109.47240 * 179.97438 * 17 15 2 19 19 C 1.53002 * 109.47138 * 300.00380 * 18 17 15 20 20 C 1.52998 * 109.47090 * 60.00149 * 19 18 17 21 21 C 1.52999 * 109.46822 * 299.99448 * 20 19 18 22 22 H 1.09000 * 109.47863 * 299.99958 * 21 20 19 23 23 S 1.81405 * 109.47031 * 180.02562 * 21 20 19 24 24 C 1.81396 * 101.92093 * 60.71200 * 23 21 20 25 25 O 1.42093 * 108.58165 * 175.20017 * 23 21 20 26 26 O 1.42101 * 108.57608 * 306.22457 * 23 21 20 27 27 H 1.08996 * 109.47018 * 177.34680 * 1 2 3 28 28 H 1.08996 * 109.46715 * 57.35077 * 1 2 3 29 29 H 1.08999 * 109.47178 * 297.35419 * 1 2 3 30 30 H 1.09003 * 109.47499 * 186.04307 * 3 2 1 31 31 H 1.09000 * 109.47122 * 306.04559 * 3 2 1 32 32 H 1.08998 * 109.47341 * 300.00625 * 4 3 2 33 33 H 1.08999 * 109.47384 * 59.99855 * 4 3 2 34 34 H 1.09003 * 109.47205 * 299.99919 * 5 4 3 35 35 H 1.09000 * 109.47264 * 60.00078 * 5 4 3 36 36 H 0.96995 * 120.00365 * 179.97438 * 10 9 7 37 37 H 1.08998 * 109.47259 * 300.00187 * 17 15 2 38 38 H 1.09001 * 109.46449 * 60.00410 * 17 15 2 39 39 H 1.08999 * 109.46699 * 60.00383 * 18 17 15 40 40 H 1.08999 * 109.46916 * 180.02562 * 18 17 15 41 41 H 1.09004 * 109.46752 * 180.02562 * 19 18 17 42 42 H 1.08998 * 109.46924 * 299.99974 * 19 18 17 43 43 H 1.08999 * 109.47468 * 59.99555 * 20 19 18 44 44 H 1.08998 * 109.46984 * 179.97438 * 20 19 18 45 45 H 1.09003 * 109.47043 * 60.00038 * 24 23 21 46 46 H 1.09001 * 109.47146 * 180.02562 * 24 23 21 47 47 H 1.08999 * 109.47250 * 300.00371 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3713 0.0000 4 6 1.6316 2.0574 1.3182 5 6 2.1794 3.4859 1.3180 6 16 1.7495 4.2973 2.8778 7 6 2.4822 5.8776 2.6128 8 1 3.0006 6.0843 1.6882 9 6 2.3923 6.8573 3.5920 10 7 1.7600 6.6056 4.7187 11 14 3.1685 8.5329 3.3107 12 1 2.5598 9.1658 2.1132 13 1 2.9341 9.3927 4.4986 14 1 4.6292 8.3722 3.0972 15 6 1.9955 -0.7660 -1.1375 16 1 1.5057 -1.7389 -1.1782 17 6 1.7233 -0.0034 -2.4357 18 6 2.2722 -0.8009 -3.6204 19 6 3.7802 -0.9953 -3.4496 20 6 4.0523 -1.7580 -2.1515 21 6 3.5035 -0.9604 -0.9668 22 1 3.9929 0.0126 -0.9258 23 16 3.8267 -1.8644 0.5724 24 6 5.6382 -1.9579 0.5787 25 8 3.4112 -1.0586 1.6665 26 8 3.3058 -3.1801 0.4426 27 1 -0.3633 -1.0265 -0.0476 28 1 -0.3632 0.5544 -0.8653 29 1 -0.3633 0.4722 0.9127 30 1 3.0799 1.3443 -0.1082 31 1 1.5613 1.9273 -0.8309 32 1 0.5473 2.0844 1.4265 33 1 2.0658 1.5015 2.1492 34 1 3.2637 3.4592 1.2096 35 1 1.7448 4.0416 0.4871 36 1 1.6974 7.2900 5.4031 37 1 0.6491 0.1355 -2.5571 38 1 2.2132 0.9695 -2.3949 39 1 1.7827 -1.7740 -3.6613 40 1 2.0787 -0.2573 -4.5452 41 1 4.1713 -1.5631 -4.2939 42 1 4.2696 -0.0222 -3.4087 43 1 3.5628 -2.7311 -2.1924 44 1 5.1265 -1.8969 -2.0300 45 1 6.0541 -0.9504 0.5790 46 1 5.9715 -2.4893 1.4701 47 1 5.9776 -2.4907 -0.3096 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177011156.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:24 Heat of formation + Delta-G solvation = -109.371264 kcal Electronic energy + Delta-G solvation = -25994.887815 eV Core-core repulsion = 22429.595458 eV Total energy + Delta-G solvation = -3565.292357 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.138 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.69984 -37.90142 -37.19477 -36.76334 -34.60561 -34.08464 -32.27768 -30.54115 -30.02796 -28.18630 -27.57345 -25.54371 -24.03282 -22.93328 -21.84684 -20.37137 -19.57673 -19.54320 -17.90006 -17.15153 -16.88860 -16.88172 -16.50516 -16.44732 -16.22575 -15.70070 -15.35042 -15.02924 -14.76595 -14.69780 -14.53735 -14.14785 -13.90380 -13.62112 -13.53942 -13.41466 -13.17254 -12.99828 -12.88170 -12.87463 -12.80227 -12.69263 -12.61464 -12.50597 -12.32182 -12.13674 -12.03641 -11.74600 -11.54436 -11.44944 -11.36801 -11.15683 -11.11087 -10.82611 -10.28382 -9.21325 -8.65224 -8.35236 -6.12045 -0.79015 1.31584 1.41619 1.48610 1.76351 2.02084 2.30284 2.78926 2.87232 2.98514 3.23793 3.34867 3.48389 3.71511 3.88590 3.97830 4.10585 4.11234 4.13054 4.20635 4.32474 4.33863 4.36808 4.41814 4.44532 4.47585 4.57295 4.61025 4.71800 4.79536 4.84265 4.90291 4.96482 5.00610 5.07086 5.12579 5.18340 5.24210 5.26992 5.30138 5.40186 5.42720 5.49791 6.05376 6.05610 6.19316 7.06030 8.74174 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.015902 B = 0.002844 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.320407 B = 9842.156674 C =10255.831071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.554 5.554 3 C 0.072 3.928 4 C -0.086 4.086 5 C -0.084 4.084 6 S -0.205 6.205 7 C -0.537 4.537 8 H 0.074 0.926 9 C 0.013 3.987 10 N -0.909 5.909 11 Si 0.996 3.004 12 H -0.263 1.263 13 H -0.276 1.276 14 H -0.263 1.263 15 C 0.097 3.903 16 H 0.095 0.905 17 C -0.141 4.141 18 C -0.117 4.117 19 C -0.111 4.111 20 C -0.111 4.111 21 C -0.555 4.555 22 H 0.151 0.849 23 S 2.414 3.586 24 C -0.654 4.654 25 O -0.959 6.959 26 O -0.984 6.984 27 H 0.076 0.924 28 H 0.042 0.958 29 H 0.063 0.937 30 H 0.082 0.918 31 H 0.049 0.951 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.271 0.729 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.085 0.915 42 H 0.069 0.931 43 H 0.083 0.917 44 H 0.106 0.894 45 H 0.146 0.854 46 H 0.131 0.869 47 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.179 -19.287 -20.616 29.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.277 5.277 3 C -0.057 4.057 4 C -0.125 4.125 5 C -0.233 4.233 6 S 0.024 5.976 7 C -0.685 4.685 8 H 0.093 0.907 9 C -0.191 4.191 10 N -0.546 5.546 11 Si 0.817 3.183 12 H -0.188 1.188 13 H -0.201 1.201 14 H -0.188 1.188 15 C -0.012 4.012 16 H 0.113 0.887 17 C -0.181 4.181 18 C -0.155 4.155 19 C -0.150 4.150 20 C -0.149 4.149 21 C -0.666 4.666 22 H 0.169 0.831 23 S 2.601 3.399 24 C -0.805 4.805 25 O -0.956 6.956 26 O -0.981 6.981 27 H 0.095 0.905 28 H 0.061 0.939 29 H 0.081 0.919 30 H 0.100 0.900 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.103 0.897 42 H 0.088 0.912 43 H 0.102 0.898 44 H 0.125 0.875 45 H 0.165 0.835 46 H 0.150 0.850 47 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 6.074 -20.190 -18.412 27.991 hybrid contribution 0.940 2.251 -1.680 2.962 sum 7.014 -17.939 -20.092 27.833 Atomic orbital electron populations 1.22458 0.86347 1.02559 1.01480 1.62198 1.09253 1.14640 1.41644 1.22031 1.00525 0.87540 0.95623 1.21177 1.00591 0.91861 0.98911 1.23133 1.02512 0.98693 0.98973 1.84793 1.75043 1.14041 1.23730 1.23015 1.40992 0.98425 1.06084 0.90743 1.26113 0.95529 1.03498 0.93990 1.70168 1.41289 1.35986 1.07138 0.85043 0.78863 0.76198 0.78155 1.18801 1.20077 1.18776 1.21530 0.91112 0.98650 0.89919 0.88700 1.22122 1.01528 0.99817 0.94617 1.21517 0.96448 1.00366 0.97206 1.21487 0.95802 1.00981 0.96694 1.21592 1.02617 0.98494 0.92230 1.30205 1.03995 1.14406 1.17969 0.83086 1.07881 0.79365 0.75068 0.77604 1.30276 1.23626 1.13414 1.13212 1.93609 1.80860 1.70446 1.50722 1.93496 1.78848 1.38509 1.87277 0.90483 0.93932 0.91858 0.89973 0.93334 0.92237 0.92004 0.91761 0.91817 0.92009 0.91481 0.91301 0.91463 0.91097 0.89685 0.91242 0.89798 0.87529 0.83524 0.85012 0.82522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 8.94 127.69 1.14 1.58 16 2 N -0.55 -13.51 3.33 -897.07 -2.99 -16.50 16 3 C 0.07 1.88 3.90 86.30 0.34 2.22 16 4 C -0.09 -3.08 5.14 30.59 0.16 -2.92 16 5 C -0.08 -3.50 5.67 71.98 0.41 -3.09 16 6 S -0.20 -11.40 21.44 -56.49 -1.21 -12.62 16 7 C -0.54 -31.70 9.50 67.96 0.65 -31.05 16 8 H 0.07 4.17 7.80 -2.91 -0.02 4.15 16 9 C 0.01 0.78 5.49 84.86 0.47 1.24 16 10 N -0.91 -56.30 13.22 21.65 0.29 -56.01 16 11 Si 1.00 44.37 29.55 68.60 2.03 46.40 16 12 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 13 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 14 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 15 C 0.10 1.74 1.63 44.92 0.07 1.82 16 16 H 0.09 1.72 7.97 -2.39 -0.02 1.70 16 17 C -0.14 -2.05 4.46 30.60 0.14 -1.91 16 18 C -0.12 -1.21 5.92 30.60 0.18 -1.03 16 19 C -0.11 -0.86 5.92 30.59 0.18 -0.68 16 20 C -0.11 -0.92 4.96 30.59 0.15 -0.77 16 21 C -0.55 -7.86 1.90 30.60 0.06 -7.80 16 22 H 0.15 1.73 6.37 -2.39 -0.02 1.72 16 23 S 2.41 47.79 4.77 -56.49 -0.27 47.52 16 24 C -0.65 -6.56 10.19 113.37 1.16 -5.40 16 25 O -0.96 -29.37 16.95 -127.37 -2.16 -31.53 16 26 O -0.98 -25.45 17.88 -127.37 -2.28 -27.72 16 27 H 0.08 1.55 8.00 -2.39 -0.02 1.53 16 28 H 0.04 0.85 6.89 -2.39 -0.02 0.83 16 29 H 0.06 1.66 6.60 -2.39 -0.02 1.64 16 30 H 0.08 1.92 6.09 -2.39 -0.01 1.91 16 31 H 0.05 1.16 6.80 -2.39 -0.02 1.14 16 32 H 0.06 2.15 6.61 -2.39 -0.02 2.14 16 33 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 34 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 35 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 36 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 37 H 0.07 1.01 6.84 -2.39 -0.02 1.00 16 38 H 0.07 1.06 6.55 -2.39 -0.02 1.05 16 39 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 42 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 43 H 0.08 0.76 8.04 -2.39 -0.02 0.74 16 44 H 0.11 0.25 6.58 -2.39 -0.02 0.23 16 45 H 0.15 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 47 H 0.16 0.55 6.89 -2.39 -0.02 0.53 16 Total: -1.00 -82.53 381.74 -0.56 -83.09 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: 0.94 Total: 15.16 kcal Atomic # 6 Polarization: -52.89 SS G_CDS: 5.09 Total: -47.80 kcal Atomic # 7 Polarization: -69.81 SS G_CDS: -2.70 Total: -72.51 kcal Atomic # 8 Polarization: -54.81 SS G_CDS: -4.44 Total: -59.25 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Atomic # 16 Polarization: 36.38 SS G_CDS: -1.48 Total: 34.90 kcal Total: -82.53 -0.56 -83.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177011156.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.277 kcal (2) G-P(sol) polarization free energy of solvation -82.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds