Wall clock time and date at job start Tue Mar 31 2020 18:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47422 * 2 1 4 4 C 1.50703 * 109.46681 * 119.99725 * 2 1 3 5 5 H 1.08006 * 119.99753 * 119.99977 * 4 2 1 6 6 C 1.37878 * 120.00189 * 299.99450 * 4 2 1 7 7 N 1.31513 * 119.99791 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00156 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46841 * 90.00242 * 8 6 4 10 10 H 1.48492 * 109.47251 * 210.00063 * 8 6 4 11 11 H 1.48500 * 109.47284 * 330.00446 * 8 6 4 12 12 N 1.46497 * 109.47208 * 239.99358 * 2 1 3 13 13 C 1.34783 * 120.00217 * 85.00183 * 12 2 1 14 14 O 1.21287 * 119.99437 * 0.02562 * 13 12 2 15 15 C 1.50693 * 120.00239 * 180.02562 * 13 12 2 16 16 N 1.46502 * 109.46898 * 180.02562 * 15 13 12 17 17 C 1.34928 * 119.50759 * 90.00011 * 16 15 13 18 18 O 1.21803 * 120.38850 * 359.97396 * 17 16 15 19 19 C 1.41155 * 119.22459 * 180.24803 * 17 16 15 20 20 C 1.38920 * 119.16137 * 359.48040 * 19 17 16 21 21 N 1.33549 * 107.24050 * 180.32139 * 20 19 17 22 22 C 1.30868 * 109.80955 * 0.20975 * 21 20 19 23 23 N 1.34737 * 109.70987 * 0.02562 * 22 21 20 24 24 C 1.46500 * 126.50449 * 180.02562 * 23 22 21 25 25 N 1.38549 * 118.85562 * 0.49355 * 20 19 17 26 26 C 1.46496 * 119.95308 * 179.78904 * 25 20 19 27 27 C 1.34413 * 119.50248 * 269.97246 * 16 15 13 28 28 O 1.21600 * 119.17219 * 0.02562 * 27 16 15 29 29 H 1.08998 * 109.47422 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46965 * 300.00827 * 1 2 3 31 31 H 1.09003 * 109.46841 * 60.00331 * 1 2 3 32 32 H 0.96997 * 120.00347 * 180.02562 * 7 6 4 33 33 H 0.97003 * 120.00363 * 265.00580 * 12 2 1 34 34 H 1.08992 * 109.47570 * 59.99821 * 15 13 12 35 35 H 1.09004 * 109.46873 * 299.99807 * 15 13 12 36 36 H 1.07996 * 125.14903 * 179.97438 * 22 21 20 37 37 H 1.08997 * 109.47320 * 89.97464 * 24 23 22 38 38 H 1.08998 * 109.46795 * 209.97181 * 24 23 22 39 39 H 1.08994 * 109.47132 * 329.97052 * 24 23 22 40 40 H 1.08998 * 109.47485 * 179.97438 * 26 25 20 41 41 H 1.08998 * 109.47450 * 299.98453 * 26 25 20 42 42 H 1.09006 * 109.47008 * 59.97570 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 1.2306 5 1 2.6531 -1.5886 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9428 0.8299 2.6034 8 14 2.3223 -1.1193 4.0081 9 1 3.6304 -0.5438 4.4120 10 1 1.3443 -0.9486 5.1123 11 1 2.4878 -2.5652 3.7125 12 7 2.0183 -0.6907 -1.1961 13 6 2.1471 -0.0185 -2.3572 14 8 1.8591 1.1584 -2.4116 15 6 2.6489 -0.7292 -3.5876 16 7 2.6989 0.2123 -4.7090 17 6 3.8247 0.9221 -4.9311 18 8 4.7936 0.7836 -4.2060 19 6 3.8645 1.8314 -6.0100 20 6 2.7467 1.9654 -6.8239 21 7 3.0446 2.8707 -7.7595 22 6 4.2675 3.3026 -7.5853 23 7 4.8187 2.6892 -6.5198 24 6 6.1714 2.8977 -5.9974 25 7 1.6210 1.2077 -6.5440 26 6 0.4273 1.3334 -7.3838 27 6 1.6227 0.3556 -5.5014 28 8 0.6254 -0.3007 -5.2711 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 0.7088 1.1616 3.4843 33 1 2.2490 -1.6319 -1.1525 34 1 1.9761 -1.5509 -3.8324 35 1 3.6480 -1.1217 -3.3984 36 1 4.7608 4.0388 -8.2026 37 1 6.1555 3.6967 -5.2562 38 1 6.5271 1.9781 -5.5326 39 1 6.8380 3.1732 -6.8145 40 1 -0.3497 0.6648 -7.0133 41 1 0.0673 2.3618 -7.3521 42 1 0.6762 1.0672 -8.4112 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194741256.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:20 Heat of formation + Delta-G solvation = -0.885088 kcal Electronic energy + Delta-G solvation = -29569.195999 eV Core-core repulsion = 25359.163541 eV Total energy + Delta-G solvation = -4210.032458 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.21927 -41.31316 -39.23461 -38.54616 -36.48739 -35.34843 -34.62580 -34.06821 -32.40538 -31.04952 -29.40241 -27.81062 -27.53346 -26.81987 -25.21943 -24.11252 -23.44097 -21.51408 -21.18040 -19.66712 -19.53208 -18.58413 -17.78105 -17.38058 -16.82409 -16.28083 -15.92817 -15.82919 -15.58933 -15.40257 -14.96771 -14.67774 -14.59781 -14.44869 -13.97678 -13.81685 -13.62300 -13.18857 -13.10445 -12.93892 -12.48388 -12.38868 -12.06808 -11.57599 -11.24716 -11.05065 -10.94753 -10.93007 -10.70189 -10.66190 -10.30974 -10.29154 -10.21003 -10.19849 -9.93641 -9.03357 -8.92757 -8.52610 -8.32465 -7.91682 -6.09582 -4.18903 0.71177 1.50015 1.94126 2.27582 2.36353 2.72798 3.26782 3.31898 3.33418 3.34781 3.36742 3.79271 4.09807 4.22036 4.25688 4.40220 4.43031 4.81845 4.99938 5.12538 5.18020 5.20331 5.22794 5.23622 5.30784 5.35919 5.53470 5.56371 5.58963 5.85501 6.26580 6.54318 6.86785 7.01755 7.07609 7.18756 7.30432 7.41449 7.46458 7.57109 7.70952 7.86121 7.94534 8.17434 8.64092 8.78907 9.09089 9.48082 10.96486 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.018477 B = 0.003050 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.052061 B = 9176.626922 C =10021.644777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.266 3.734 3 H 0.048 0.952 4 C -0.533 4.533 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.903 3.097 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.702 5.702 13 C 0.495 3.505 14 O -0.547 6.547 15 C 0.092 3.908 16 N -0.529 5.529 17 C 0.600 3.400 18 O -0.509 6.509 19 C -0.146 4.146 20 C 0.317 3.683 21 N -0.500 5.500 22 C 0.259 3.741 23 N -0.412 5.412 24 C 0.070 3.930 25 N -0.512 5.512 26 C 0.089 3.911 27 C 0.716 3.284 28 O -0.530 6.530 29 H 0.028 0.972 30 H 0.090 0.910 31 H 0.014 0.986 32 H 0.264 0.736 33 H 0.390 0.610 34 H 0.127 0.873 35 H 0.126 0.874 36 H 0.229 0.771 37 H 0.087 0.913 38 H 0.101 0.899 39 H 0.095 0.905 40 H 0.102 0.898 41 H 0.077 0.923 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.255 2.054 -23.481 24.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.165 3.835 3 H 0.066 0.934 4 C -0.572 4.572 5 H 0.081 0.919 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.351 5.351 13 C 0.278 3.722 14 O -0.425 6.425 15 C -0.032 4.032 16 N -0.271 5.271 17 C 0.394 3.606 18 O -0.385 6.385 19 C -0.263 4.263 20 C 0.086 3.914 21 N -0.224 5.224 22 C -0.024 4.024 23 N -0.094 5.094 24 C -0.072 4.072 25 N -0.240 5.240 26 C -0.052 4.052 27 C 0.418 3.582 28 O -0.402 6.402 29 H 0.047 0.953 30 H 0.109 0.891 31 H 0.033 0.967 32 H 0.074 0.926 33 H 0.223 0.777 34 H 0.145 0.855 35 H 0.144 0.856 36 H 0.245 0.755 37 H 0.106 0.894 38 H 0.119 0.881 39 H 0.114 0.886 40 H 0.121 0.879 41 H 0.095 0.905 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 7.494 2.786 -23.308 24.641 hybrid contribution 0.975 -0.856 1.443 1.940 sum 8.469 1.930 -21.866 23.528 Atomic orbital electron populations 1.22070 0.98313 0.99231 1.00897 1.18762 0.91103 0.93936 0.79742 0.93447 1.21221 1.32427 1.13254 0.90256 0.91949 1.24896 0.94802 0.94986 0.99077 1.69909 1.35837 1.22510 1.23862 0.86427 0.78558 0.79849 0.82130 1.20584 1.21093 1.19792 1.46417 1.64908 1.13588 1.10152 1.20373 0.79159 0.87867 0.84849 1.90675 1.51078 1.15899 1.84858 1.21691 1.05951 0.91548 0.84057 1.45319 1.12703 1.40554 1.28556 1.15353 0.82644 0.79481 0.83118 1.90881 1.34066 1.65494 1.48026 1.18787 0.93335 1.08749 1.05440 1.18065 0.86199 0.93934 0.93207 1.69636 1.14032 1.13711 1.25041 1.25251 0.89068 0.98522 0.89607 1.44663 1.12635 1.29433 1.22642 1.22326 0.78278 1.05526 1.01051 1.43776 1.13311 1.37892 1.28991 1.21959 0.85365 1.04233 0.93666 1.15347 0.83522 0.80446 0.78851 1.91020 1.30943 1.46987 1.71283 0.95330 0.89142 0.96653 0.92591 0.77705 0.85500 0.85619 0.75519 0.89419 0.88071 0.88593 0.87948 0.90456 0.90537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.81 9.26 37.16 0.34 -3.47 16 2 C 0.27 7.04 2.56 -69.08 -0.18 6.86 16 3 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 4 C -0.53 -14.45 8.73 -34.44 -0.30 -14.75 16 5 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -25.45 11.32 55.43 0.63 -24.82 16 8 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 9 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 12 N -0.70 -15.27 5.07 -54.93 -0.28 -15.55 16 13 C 0.49 10.63 7.86 -10.99 -0.09 10.54 16 14 O -0.55 -14.12 16.09 5.55 0.09 -14.03 16 15 C 0.09 1.50 5.54 -5.20 -0.03 1.47 16 16 N -0.53 -8.93 2.05 -125.46 -0.26 -9.18 16 17 C 0.60 9.97 7.43 -15.08 -0.11 9.86 16 18 O -0.51 -9.18 15.56 5.10 0.08 -9.11 16 19 C -0.15 -2.04 6.90 -83.70 -0.58 -2.62 16 20 C 0.32 4.29 7.69 -154.55 -1.19 3.10 16 21 N -0.50 -5.57 11.20 -13.39 -0.15 -5.72 16 22 C 0.26 1.97 12.50 -90.35 -1.13 0.84 16 23 N -0.41 -3.99 3.18 -123.14 -0.39 -4.38 16 24 C 0.07 0.44 10.97 59.85 0.66 1.09 16 25 N -0.51 -7.21 3.06 -128.31 -0.39 -7.60 16 26 C 0.09 0.93 10.63 59.84 0.64 1.57 16 27 C 0.72 11.90 8.11 -87.36 -0.71 11.19 16 28 O -0.53 -9.63 15.01 5.28 0.08 -9.56 16 29 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.09 2.53 6.07 -51.93 -0.32 2.22 16 31 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 33 H 0.39 7.13 8.54 -40.82 -0.35 6.78 16 34 H 0.13 1.76 7.34 -51.93 -0.38 1.38 16 35 H 0.13 1.76 7.40 -51.93 -0.38 1.37 16 36 H 0.23 0.44 8.06 -52.49 -0.42 0.02 16 37 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.10 0.81 7.27 -51.93 -0.38 0.44 16 39 H 0.10 0.20 8.14 -51.93 -0.42 -0.22 16 40 H 0.10 1.10 6.85 -51.93 -0.36 0.74 16 41 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 360.87 15.07 5.44 5.44 Total: -1.00 -38.50 360.87 -8.00 -46.50 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -5.06 Total: 4.65 kcal Atomic # 6 Polarization: 30.16 SS G_CDS: -2.77 Total: 27.40 kcal Atomic # 7 Polarization: -66.41 SS G_CDS: -0.84 Total: -67.25 kcal Atomic # 8 Polarization: -32.94 SS G_CDS: 0.25 Total: -32.69 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -38.50 -8.00 -46.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194741256.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.613 kcal (2) G-P(sol) polarization free energy of solvation -38.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds