Wall clock time and date at job start Tue Mar 31 2020 18:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47422 * 2 1 4 4 C 1.50703 * 109.46681 * 119.99725 * 2 1 3 5 5 H 1.08006 * 119.99753 * 119.99977 * 4 2 1 6 6 C 1.37878 * 120.00189 * 299.99450 * 4 2 1 7 7 N 1.31513 * 119.99791 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00156 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46841 * 90.00242 * 8 6 4 10 10 H 1.48492 * 109.47251 * 210.00063 * 8 6 4 11 11 H 1.48500 * 109.47284 * 330.00446 * 8 6 4 12 12 N 1.46497 * 109.47208 * 239.99358 * 2 1 3 13 13 C 1.34783 * 120.00217 * 85.00183 * 12 2 1 14 14 O 1.21287 * 119.99437 * 0.02562 * 13 12 2 15 15 C 1.50693 * 120.00239 * 180.02562 * 13 12 2 16 16 N 1.46502 * 109.46898 * 180.02562 * 15 13 12 17 17 C 1.34928 * 119.50759 * 90.00011 * 16 15 13 18 18 O 1.21803 * 120.38850 * 359.97396 * 17 16 15 19 19 C 1.41155 * 119.22459 * 180.24803 * 17 16 15 20 20 C 1.38920 * 119.16137 * 359.48040 * 19 17 16 21 21 N 1.33549 * 107.24050 * 180.32139 * 20 19 17 22 22 C 1.30868 * 109.80955 * 0.20975 * 21 20 19 23 23 N 1.34737 * 109.70987 * 0.02562 * 22 21 20 24 24 C 1.46500 * 126.50449 * 180.02562 * 23 22 21 25 25 N 1.38549 * 118.85562 * 0.49355 * 20 19 17 26 26 C 1.46496 * 119.95308 * 179.78904 * 25 20 19 27 27 C 1.34413 * 119.50248 * 269.97246 * 16 15 13 28 28 O 1.21600 * 119.17219 * 0.02562 * 27 16 15 29 29 H 1.08998 * 109.47422 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46965 * 300.00827 * 1 2 3 31 31 H 1.09003 * 109.46841 * 60.00331 * 1 2 3 32 32 H 0.96997 * 120.00347 * 180.02562 * 7 6 4 33 33 H 0.97003 * 120.00363 * 265.00580 * 12 2 1 34 34 H 1.08992 * 109.47570 * 59.99821 * 15 13 12 35 35 H 1.09004 * 109.46873 * 299.99807 * 15 13 12 36 36 H 1.07996 * 125.14903 * 179.97438 * 22 21 20 37 37 H 1.08997 * 109.47320 * 89.97464 * 24 23 22 38 38 H 1.08998 * 109.46795 * 209.97181 * 24 23 22 39 39 H 1.08994 * 109.47132 * 329.97052 * 24 23 22 40 40 H 1.08998 * 109.47485 * 179.97438 * 26 25 20 41 41 H 1.08998 * 109.47450 * 299.98453 * 26 25 20 42 42 H 1.09006 * 109.47008 * 59.97570 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 1.2306 5 1 2.6531 -1.5886 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9428 0.8299 2.6034 8 14 2.3223 -1.1193 4.0081 9 1 3.6304 -0.5438 4.4120 10 1 1.3443 -0.9486 5.1123 11 1 2.4878 -2.5652 3.7125 12 7 2.0183 -0.6907 -1.1961 13 6 2.1471 -0.0185 -2.3572 14 8 1.8591 1.1584 -2.4116 15 6 2.6489 -0.7292 -3.5876 16 7 2.6989 0.2123 -4.7090 17 6 3.8247 0.9221 -4.9311 18 8 4.7936 0.7836 -4.2060 19 6 3.8645 1.8314 -6.0100 20 6 2.7467 1.9654 -6.8239 21 7 3.0446 2.8707 -7.7595 22 6 4.2675 3.3026 -7.5853 23 7 4.8187 2.6892 -6.5198 24 6 6.1714 2.8977 -5.9974 25 7 1.6210 1.2077 -6.5440 26 6 0.4273 1.3334 -7.3838 27 6 1.6227 0.3556 -5.5014 28 8 0.6254 -0.3007 -5.2711 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 0.7088 1.1616 3.4843 33 1 2.2490 -1.6319 -1.1525 34 1 1.9761 -1.5509 -3.8324 35 1 3.6480 -1.1217 -3.3984 36 1 4.7608 4.0388 -8.2026 37 1 6.1555 3.6967 -5.2562 38 1 6.5271 1.9781 -5.5326 39 1 6.8380 3.1732 -6.8145 40 1 -0.3497 0.6648 -7.0133 41 1 0.0673 2.3618 -7.3521 42 1 0.6762 1.0672 -8.4112 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194741256.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:19 Heat of formation + Delta-G solvation = -27.973903 kcal Electronic energy + Delta-G solvation = -29570.370658 eV Core-core repulsion = 25359.163541 eV Total energy + Delta-G solvation = -4211.207117 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.19088 -42.40225 -40.64723 -40.10931 -37.59154 -36.93136 -36.33096 -34.85007 -34.41224 -32.25506 -31.09691 -29.13184 -28.24209 -27.85268 -27.36543 -25.22569 -24.56148 -23.13634 -22.29163 -21.41105 -20.65270 -19.70828 -19.27285 -18.58637 -18.20702 -17.51193 -17.32372 -17.05247 -16.90723 -16.59090 -16.55082 -16.11134 -15.94170 -15.60393 -15.37587 -14.94169 -14.79195 -14.52128 -14.42726 -13.85223 -13.84327 -13.66742 -13.35463 -13.30285 -13.02145 -12.87178 -12.77323 -12.40369 -12.29850 -12.14570 -11.80649 -11.76053 -11.70253 -11.31755 -11.15934 -10.85865 -10.65569 -10.54140 -9.86663 -9.29962 -8.19625 -6.37858 -0.25343 0.43818 0.73883 1.44034 1.45162 1.46011 1.55350 1.56692 1.62671 1.68177 2.13892 2.36425 2.59173 2.91259 3.10742 3.31591 3.65943 3.74345 3.83147 3.97594 4.08910 4.10720 4.19167 4.37691 4.45442 4.49615 4.66911 4.69689 4.75740 4.78089 4.87325 4.93350 5.04223 5.21819 5.36558 5.54935 5.62341 5.83760 5.85290 5.98258 6.04416 6.21033 6.40856 6.67691 6.69062 6.82319 7.26947 7.42753 8.87147 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.018477 B = 0.003050 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.052061 B = 9176.626922 C =10021.644777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.273 3.727 3 H -0.006 1.006 4 C -0.548 4.548 5 H 0.078 0.922 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.977 3.023 9 H -0.278 1.278 10 H -0.283 1.283 11 H -0.257 1.257 12 N -0.696 5.696 13 C 0.490 3.510 14 O -0.596 6.596 15 C 0.103 3.897 16 N -0.536 5.536 17 C 0.591 3.409 18 O -0.538 6.538 19 C -0.183 4.183 20 C 0.313 3.687 21 N -0.518 5.518 22 C 0.294 3.706 23 N -0.414 5.414 24 C 0.066 3.934 25 N -0.512 5.512 26 C 0.085 3.915 27 C 0.709 3.291 28 O -0.556 6.556 29 H 0.044 0.956 30 H 0.068 0.932 31 H 0.005 0.995 32 H 0.266 0.734 33 H 0.410 0.590 34 H 0.154 0.846 35 H 0.151 0.849 36 H 0.290 0.710 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.148 0.852 40 H 0.096 0.904 41 H 0.086 0.914 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.932 1.762 -25.314 27.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.169 3.831 3 H 0.012 0.988 4 C -0.586 4.586 5 H 0.096 0.904 6 C -0.188 4.188 7 N -0.557 5.557 8 Si 0.801 3.199 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.181 1.181 12 N -0.346 5.346 13 C 0.275 3.725 14 O -0.478 6.478 15 C -0.022 4.022 16 N -0.279 5.279 17 C 0.388 3.612 18 O -0.416 6.416 19 C -0.300 4.300 20 C 0.081 3.919 21 N -0.242 5.242 22 C 0.012 3.988 23 N -0.095 5.095 24 C -0.074 4.074 25 N -0.239 5.239 26 C -0.054 4.054 27 C 0.411 3.589 28 O -0.430 6.430 29 H 0.063 0.937 30 H 0.087 0.913 31 H 0.025 0.975 32 H 0.075 0.925 33 H 0.246 0.754 34 H 0.171 0.829 35 H 0.168 0.832 36 H 0.305 0.695 37 H 0.106 0.894 38 H 0.096 0.904 39 H 0.166 0.834 40 H 0.114 0.886 41 H 0.104 0.896 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 9.198 2.469 -25.188 26.928 hybrid contribution 0.484 -0.615 1.882 2.038 sum 9.682 1.854 -23.307 25.306 Atomic orbital electron populations 1.21887 0.98224 0.99639 0.99320 1.18363 0.91132 0.91779 0.81792 0.98794 1.21549 1.32728 1.13724 0.90560 0.90434 1.25863 0.94786 0.95608 1.02498 1.70065 1.36948 1.24041 1.24689 0.85273 0.77698 0.79253 0.77682 1.20362 1.20887 1.18093 1.46146 1.64764 1.14410 1.09238 1.21258 0.77868 0.87415 0.85951 1.90644 1.53043 1.18302 1.85773 1.21680 1.07567 0.91320 0.81632 1.45448 1.13138 1.40807 1.28463 1.15777 0.82133 0.79671 0.83643 1.90846 1.34812 1.66663 1.49320 1.18743 0.95295 1.10322 1.05655 1.18298 0.85690 0.94199 0.93749 1.69718 1.15948 1.13738 1.24838 1.26568 0.87664 0.96694 0.87923 1.44976 1.13091 1.28644 1.22787 1.22578 0.77365 1.04368 1.03086 1.43912 1.14476 1.37103 1.28391 1.22183 0.84233 1.04692 0.94339 1.15519 0.83137 0.80853 0.79382 1.90986 1.31593 1.48231 1.72211 0.93714 0.91319 0.97546 0.92506 0.75427 0.82868 0.83170 0.69472 0.89447 0.90389 0.83413 0.88565 0.89579 0.88005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.09 9.26 71.98 0.67 -6.43 16 2 C 0.27 14.92 2.56 44.25 0.11 15.03 16 3 H -0.01 -0.38 7.58 -2.39 -0.02 -0.40 16 4 C -0.55 -29.86 8.73 25.60 0.22 -29.64 16 5 H 0.08 3.90 7.74 -2.91 -0.02 3.88 16 6 C 0.01 0.68 5.30 84.66 0.45 1.13 16 7 N -0.92 -54.23 11.32 21.45 0.24 -53.99 16 8 Si 0.98 42.82 29.54 68.60 2.03 44.84 16 9 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 10 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 12 N -0.70 -30.80 5.07 -446.10 -2.26 -33.06 16 13 C 0.49 21.67 7.86 87.65 0.69 22.36 16 14 O -0.60 -32.36 16.09 -3.05 -0.05 -32.41 16 15 C 0.10 3.36 5.54 85.63 0.47 3.83 16 16 N -0.54 -18.50 2.05 -787.39 -1.61 -20.11 16 17 C 0.59 20.11 7.43 84.93 0.63 20.74 16 18 O -0.54 -20.03 15.56 -4.68 -0.07 -20.10 16 19 C -0.18 -5.06 6.90 39.04 0.27 -4.79 16 20 C 0.31 8.18 7.69 132.82 1.02 9.20 16 21 N -0.52 -10.17 11.20 -196.26 -2.20 -12.36 16 22 C 0.29 3.31 12.50 180.25 2.25 5.56 16 23 N -0.41 -7.09 3.18 -543.51 -1.73 -8.81 16 24 C 0.07 0.68 10.97 127.77 1.40 2.08 16 25 N -0.51 -14.36 3.06 -678.20 -2.07 -16.44 16 26 C 0.09 1.73 10.63 127.77 1.36 3.09 16 27 C 0.71 24.01 8.11 179.21 1.45 25.46 16 28 O -0.56 -20.61 15.01 -4.03 -0.06 -20.67 16 29 H 0.04 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.07 3.99 6.07 -2.39 -0.01 3.98 16 31 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 33 H 0.41 14.77 8.54 -92.71 -0.79 13.97 16 34 H 0.15 4.17 7.34 -2.39 -0.02 4.15 16 35 H 0.15 4.14 7.40 -2.39 -0.02 4.12 16 36 H 0.29 -0.79 8.06 -2.91 -0.02 -0.82 16 37 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.08 1.22 7.27 -2.39 -0.02 1.20 16 39 H 0.15 -0.07 8.14 -2.39 -0.02 -0.08 16 40 H 0.10 2.07 6.85 -2.39 -0.02 2.06 16 41 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 Total: -1.00 -89.20 360.87 3.51 -85.69 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: 0.29 Total: 19.79 kcal Atomic # 6 Polarization: 56.63 SS G_CDS: 11.00 Total: 67.63 kcal Atomic # 7 Polarization: -135.15 SS G_CDS: -9.63 Total: -144.78 kcal Atomic # 8 Polarization: -73.00 SS G_CDS: -0.18 Total: -73.18 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.84 kcal Total: -89.20 3.51 -85.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194741256.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.715 kcal (2) G-P(sol) polarization free energy of solvation -89.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds