Wall clock time and date at job start Tue Mar 31 2020 18:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47839 * 2 1 4 4 C 1.50705 * 109.47245 * 120.00152 * 2 1 3 5 5 H 1.07999 * 120.00287 * 119.99442 * 4 2 1 6 6 C 1.37883 * 119.99800 * 299.99913 * 4 2 1 7 7 N 1.31510 * 119.99836 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99939 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47375 * 89.99759 * 8 6 4 10 10 H 1.48505 * 109.46999 * 209.99970 * 8 6 4 11 11 H 1.48506 * 109.47270 * 329.99643 * 8 6 4 12 12 N 1.46504 * 109.46665 * 239.99577 * 2 1 3 13 13 C 1.46492 * 120.00236 * 300.00178 * 12 2 1 14 14 C 1.34773 * 119.99387 * 120.00831 * 12 2 1 15 15 O 1.21572 * 120.00429 * 4.90842 * 14 12 2 16 16 C 1.47713 * 119.99797 * 184.91953 * 14 12 2 17 17 C 1.39599 * 120.13121 * 310.60683 * 16 14 12 18 18 C 1.38469 * 119.80726 * 180.02562 * 17 16 14 19 19 N 1.40090 * 119.96538 * 179.97438 * 18 17 16 20 20 C 1.47055 * 125.40867 * 354.09445 * 19 18 17 21 21 C 1.54101 * 103.86358 * 180.02562 * 20 19 18 22 22 N 1.47060 * 103.86275 * 0.02562 * 21 20 19 23 23 C 1.33950 * 125.41110 * 174.10000 * 19 18 17 24 24 O 1.21581 * 123.04209 * 0.02562 * 23 19 18 25 25 C 1.39028 * 120.07461 * 0.25674 * 18 17 16 26 26 C 1.38117 * 120.26880 * 359.48601 * 25 18 17 27 27 C 1.38327 * 120.19551 * 0.51483 * 26 25 18 28 28 F 1.35105 * 120.04016 * 179.71960 * 27 26 25 29 29 H 1.09003 * 109.46424 * 300.00252 * 1 2 3 30 30 H 1.08994 * 109.46701 * 59.99884 * 1 2 3 31 31 H 1.08998 * 109.47369 * 180.02562 * 1 2 3 32 32 H 0.96998 * 119.99993 * 180.02562 * 7 6 4 33 33 H 1.09007 * 109.47450 * 264.86362 * 13 12 2 34 34 H 1.09000 * 109.47430 * 24.86512 * 13 12 2 35 35 H 1.09004 * 109.47278 * 144.86627 * 13 12 2 36 36 H 1.08004 * 120.09676 * 0.02562 * 17 16 14 37 37 H 1.08998 * 110.54866 * 61.41047 * 20 19 18 38 38 H 1.08992 * 110.55105 * 298.59839 * 20 19 18 39 39 H 1.09005 * 110.54942 * 241.41145 * 21 20 19 40 40 H 1.08997 * 110.55033 * 118.59150 * 21 20 19 41 41 H 0.96994 * 125.41264 * 179.74129 * 22 21 20 42 42 H 1.08002 * 119.86779 * 179.74513 * 25 18 17 43 43 H 1.08001 * 119.90280 * 180.25747 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6533 -1.5886 1.1314 6 6 1.6993 -0.2394 2.4828 7 7 0.9437 0.8302 2.6034 8 14 2.3214 -1.1204 4.0080 9 1 3.6297 -0.5461 4.4124 10 1 1.3431 -0.9492 5.1121 11 1 2.4858 -2.5663 3.7120 12 7 2.0183 -0.6907 -1.1962 13 6 1.6643 -2.0932 -1.4279 14 6 2.7932 -0.0358 -2.0833 15 8 3.1608 1.0989 -1.8480 16 6 3.1957 -0.6966 -3.3415 17 6 3.7383 -1.9825 -3.3153 18 6 4.1138 -2.5954 -4.4988 19 7 4.6592 -3.8856 -4.4763 20 6 4.9983 -4.6462 -3.2643 21 6 5.5534 -5.9774 -3.8070 22 7 5.4687 -5.8253 -5.2673 23 6 4.9547 -4.6223 -5.5553 24 8 4.7743 -4.2336 -6.6931 25 6 3.9557 -1.9295 -5.7090 26 6 3.4143 -0.6592 -5.7391 27 6 3.0354 -0.0364 -4.5635 28 9 2.5113 1.2084 -4.5961 29 1 -0.3632 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 0.7096 1.1618 3.4844 33 1 2.4605 -2.7359 -1.0520 34 1 0.7348 -2.3242 -0.9076 35 1 1.5343 -2.2633 -2.4968 36 1 3.8648 -2.4979 -2.3746 37 1 4.1079 -4.8206 -2.6603 38 1 5.7587 -4.1231 -2.6845 39 1 4.9384 -6.8131 -3.4728 40 1 6.5892 -6.1150 -3.4966 41 1 5.7441 -6.4892 -5.9185 42 1 4.2535 -2.4091 -6.6297 43 1 3.2903 -0.1490 -6.6828 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265607814.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:54 Heat of formation + Delta-G solvation = -45.917760 kcal Electronic energy + Delta-G solvation = -29357.014504 eV Core-core repulsion = 25125.109322 eV Total energy + Delta-G solvation = -4231.905183 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.62658 -41.81380 -39.67012 -38.08734 -36.89268 -35.39659 -34.41302 -33.02095 -31.41452 -29.91906 -29.18401 -28.82969 -26.31776 -25.25926 -24.49689 -23.80941 -22.61046 -21.79234 -20.42949 -18.90701 -18.11833 -17.52368 -17.17236 -17.11881 -16.60835 -16.07692 -15.98573 -15.40087 -15.22996 -15.12629 -14.54038 -14.48425 -14.28068 -14.14913 -14.05457 -13.51156 -13.34065 -12.94458 -12.88006 -12.67207 -12.59954 -12.39658 -12.23356 -11.64022 -11.55435 -11.35004 -11.08521 -10.86722 -10.74245 -10.35972 -10.26973 -10.25036 -10.19624 -9.63842 -9.23584 -9.22001 -8.97302 -8.45777 -7.95726 -7.65615 -6.09752 -4.18157 0.92654 1.05852 2.00158 2.66834 3.21497 3.24496 3.31119 3.31909 3.34884 3.63269 3.85146 3.85786 4.33825 4.34604 4.41456 4.43468 4.72820 4.83356 4.94707 5.01808 5.13497 5.20228 5.21459 5.33720 5.41284 5.66591 5.75658 5.95832 6.06430 6.10719 6.13474 6.22057 6.34025 6.61934 6.73980 6.80317 6.86158 7.01714 7.02605 7.37775 7.47195 7.67542 7.97634 8.09223 8.15295 8.43755 8.77545 8.95032 9.48047 10.95710 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012623 B = 0.003678 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.688178 B = 7610.602109 C = 9383.949175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.258 3.742 3 H 0.065 0.935 4 C -0.525 4.525 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.275 1.275 12 N -0.583 5.583 13 C 0.085 3.915 14 C 0.547 3.453 15 O -0.532 6.532 16 C -0.119 4.119 17 C -0.102 4.102 18 C 0.169 3.831 19 N -0.567 5.567 20 C 0.080 3.920 21 C 0.093 3.907 22 N -0.737 5.737 23 C 0.702 3.298 24 O -0.569 6.569 25 C -0.114 4.114 26 C -0.130 4.130 27 C 0.119 3.881 28 F -0.125 7.125 29 H 0.095 0.905 30 H 0.013 0.987 31 H 0.031 0.969 32 H 0.264 0.736 33 H 0.046 0.954 34 H 0.077 0.923 35 H 0.053 0.947 36 H 0.143 0.857 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.433 0.567 42 H 0.168 0.832 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.093 -15.776 -13.586 21.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.158 3.842 3 H 0.083 0.917 4 C -0.564 4.564 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.200 1.200 12 N -0.313 5.313 13 C -0.059 4.059 14 C 0.332 3.668 15 O -0.410 6.410 16 C -0.124 4.124 17 C -0.123 4.123 18 C 0.076 3.924 19 N -0.294 5.294 20 C -0.043 4.043 21 C -0.032 4.032 22 N -0.399 5.399 23 C 0.403 3.597 24 O -0.447 6.447 25 C -0.134 4.134 26 C -0.150 4.150 27 C 0.097 3.903 28 F -0.103 7.103 29 H 0.114 0.886 30 H 0.032 0.968 31 H 0.050 0.950 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.096 0.904 35 H 0.072 0.928 36 H 0.161 0.839 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.275 0.725 42 H 0.185 0.815 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 7.029 -14.754 -13.826 21.406 hybrid contribution 0.372 -0.776 0.861 1.217 sum 7.401 -15.530 -12.964 21.541 Atomic orbital electron populations 1.22110 0.98026 0.99463 1.01032 1.19015 0.90945 0.94593 0.79642 0.91743 1.21277 1.31945 1.13010 0.90175 0.92271 1.24896 0.94920 0.94987 0.98961 1.69875 1.36220 1.22555 1.23820 0.86485 0.78676 0.79750 0.82378 1.20604 1.21123 1.19958 1.48174 1.48287 1.11634 1.23223 1.21708 1.01374 0.83003 0.99804 1.17940 0.79958 0.86010 0.82878 1.90788 1.54888 1.18234 1.77058 1.20035 1.03483 0.94879 0.94022 1.20797 1.00427 0.93784 0.97339 1.17203 0.98181 0.82687 0.94369 1.44422 1.63224 1.14306 1.07477 1.22680 1.02411 0.90928 0.88254 1.22425 1.02796 0.97577 0.80403 1.45072 1.68666 1.17708 1.08425 1.15787 0.78469 0.81290 0.84183 1.90858 1.60061 1.73561 1.20203 1.21542 0.99338 0.93839 0.98672 1.20977 1.01160 0.95612 0.97238 1.17640 0.98553 0.80991 0.93089 1.91553 1.83632 1.37999 1.97147 0.88648 0.96831 0.95024 0.92621 0.93505 0.90404 0.92805 0.83910 0.88511 0.88629 0.89219 0.89305 0.72461 0.81523 0.83811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 8.96 37.16 0.33 -3.18 16 2 C 0.26 6.55 2.63 -69.08 -0.18 6.36 16 3 H 0.06 1.91 6.91 -51.93 -0.36 1.56 16 4 C -0.53 -13.86 8.37 -34.44 -0.29 -14.15 16 5 H 0.06 1.51 7.65 -52.49 -0.40 1.11 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -24.80 11.32 55.43 0.63 -24.17 16 8 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 9 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 11 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 12 N -0.58 -12.46 2.75 -176.42 -0.49 -12.95 16 13 C 0.08 1.39 8.28 59.84 0.50 1.88 16 14 C 0.55 11.92 7.00 -12.39 -0.09 11.83 16 15 O -0.53 -13.87 16.00 5.30 0.08 -13.79 16 16 C -0.12 -2.06 4.89 -104.93 -0.51 -2.57 16 17 C -0.10 -1.40 7.22 -38.99 -0.28 -1.68 16 18 C 0.17 2.14 6.61 -83.70 -0.55 1.59 16 19 N -0.57 -5.88 3.16 -118.27 -0.37 -6.25 16 20 C 0.08 0.50 6.48 -3.16 -0.02 0.48 16 21 C 0.09 0.36 8.06 -3.16 -0.03 0.34 16 22 N -0.74 -4.87 6.37 -64.70 -0.41 -5.28 16 23 C 0.70 7.69 8.52 -88.39 -0.75 6.94 16 24 O -0.57 -8.15 14.75 5.29 0.08 -8.07 16 25 C -0.11 -1.48 9.28 -39.33 -0.36 -1.85 16 26 C -0.13 -1.73 10.01 -39.59 -0.40 -2.12 16 27 C 0.12 1.95 7.25 -38.96 -0.28 1.67 16 28 F -0.13 -2.32 16.51 2.25 0.04 -2.29 16 29 H 0.10 2.48 6.07 -51.93 -0.32 2.17 16 30 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.03 0.68 6.67 -51.93 -0.35 0.34 16 32 H 0.26 7.01 8.31 -40.82 -0.34 6.68 16 33 H 0.05 0.67 7.09 -51.93 -0.37 0.31 16 34 H 0.08 1.29 6.44 -51.93 -0.33 0.96 16 35 H 0.05 0.76 6.27 -51.93 -0.33 0.43 16 36 H 0.14 1.75 5.55 -52.48 -0.29 1.46 16 37 H 0.10 0.50 8.11 -51.93 -0.42 0.08 16 38 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 40 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 41 H 0.43 2.00 8.96 -40.82 -0.37 1.64 16 42 H 0.17 2.24 5.26 -52.49 -0.28 1.96 16 43 H 0.14 1.54 8.06 -52.49 -0.42 1.11 16 LS Contribution 354.48 15.07 5.34 5.34 Total: -1.00 -35.05 354.48 -8.19 -43.24 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -5.05 Total: 1.56 kcal Atomic # 6 Polarization: 10.20 SS G_CDS: -3.01 Total: 7.18 kcal Atomic # 7 Polarization: -48.01 SS G_CDS: -0.64 Total: -48.65 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: 0.16 Total: -21.85 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.04 Total: -2.29 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.05 -8.19 -43.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265607814.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.679 kcal (2) G-P(sol) polarization free energy of solvation -35.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds