Wall clock time and date at job start Tue Mar 31 2020 18:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47246 * 2 1 4 4 C 1.50693 * 109.47497 * 239.99562 * 2 1 3 5 5 H 1.08001 * 120.00625 * 240.00358 * 4 2 1 6 6 C 1.37877 * 120.00034 * 60.00520 * 4 2 1 7 7 N 1.31520 * 119.99635 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00328 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47145 * 59.99813 * 8 6 4 10 10 H 1.48505 * 109.47152 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47081 * 299.99718 * 8 6 4 12 12 N 1.46510 * 109.46601 * 119.99771 * 2 1 3 13 13 C 1.46499 * 120.00132 * 60.00526 * 12 2 1 14 14 C 1.34776 * 119.99467 * 239.99806 * 12 2 1 15 15 O 1.21571 * 120.00432 * 4.92724 * 14 12 2 16 16 C 1.47707 * 119.99708 * 184.92013 * 14 12 2 17 17 C 1.39601 * 120.13521 * 310.63002 * 16 14 12 18 18 C 1.38471 * 119.80561 * 179.97438 * 17 16 14 19 19 N 1.40091 * 119.96388 * 179.97438 * 18 17 16 20 20 C 1.47048 * 125.40806 * 354.09955 * 19 18 17 21 21 C 1.54108 * 103.86413 * 180.02562 * 20 19 18 22 22 N 1.47051 * 103.86074 * 0.02562 * 21 20 19 23 23 C 1.33945 * 125.41344 * 174.11238 * 19 18 17 24 24 O 1.21592 * 123.04042 * 0.02562 * 23 19 18 25 25 C 1.39037 * 120.07636 * 0.25036 * 18 17 16 26 26 C 1.38121 * 120.26531 * 359.49161 * 25 18 17 27 27 C 1.38330 * 120.19733 * 0.50902 * 26 25 18 28 28 F 1.35094 * 120.03720 * 179.72550 * 27 26 25 29 29 H 1.08990 * 109.47484 * 299.99995 * 1 2 3 30 30 H 1.09001 * 109.47024 * 60.00699 * 1 2 3 31 31 H 1.09006 * 109.47196 * 179.97438 * 1 2 3 32 32 H 0.97001 * 119.99665 * 180.02562 * 7 6 4 33 33 H 1.09000 * 109.46508 * 264.83867 * 13 12 2 34 34 H 1.08999 * 109.47113 * 24.83536 * 13 12 2 35 35 H 1.08994 * 109.46907 * 144.83831 * 13 12 2 36 36 H 1.08007 * 120.09855 * 359.97438 * 17 16 14 37 37 H 1.08999 * 110.54803 * 61.41300 * 20 19 18 38 38 H 1.09000 * 110.55529 * 298.60416 * 20 19 18 39 39 H 1.09001 * 110.54656 * 241.40878 * 21 20 19 40 40 H 1.08995 * 110.54968 * 118.59838 * 21 20 19 41 41 H 0.96998 * 125.40993 * 179.73662 * 22 21 20 42 42 H 1.08001 * 119.86493 * 179.74431 * 25 18 17 43 43 H 1.07997 * 119.89420 * 180.25548 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5886 -1.1312 6 6 1.6995 -0.2394 -2.4827 7 7 0.9430 0.8296 -2.6034 8 14 2.3216 -1.1205 -4.0078 9 1 1.8260 -2.5204 -4.0076 10 1 1.8263 -0.4207 -5.2204 11 1 3.8066 -1.1211 -4.0079 12 7 2.0182 -0.6906 1.1963 13 6 1.6643 -2.0932 1.4281 14 6 2.7931 -0.0355 2.0834 15 8 3.0132 1.1512 1.9384 16 6 3.3747 -0.7596 3.2320 17 6 2.5662 -1.5680 4.0331 18 6 3.1187 -2.2441 5.1078 19 7 2.3104 -3.0558 5.9142 20 6 0.8492 -3.1795 5.8051 21 6 0.4798 -4.1843 6.9137 22 7 1.7721 -4.5195 7.5301 23 6 2.7456 -3.8424 6.9072 24 8 3.9181 -3.9322 7.2163 25 6 4.4736 -2.1137 5.3911 26 6 5.2774 -1.3188 4.5974 27 6 4.7372 -0.6384 3.5209 28 9 5.5253 0.1425 2.7501 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 0.7084 1.1608 -3.4844 33 1 0.7893 -2.1447 2.0760 34 1 1.4401 -2.5735 0.4757 35 1 2.5003 -2.6047 1.9052 36 1 1.5129 -1.6659 3.8152 37 1 0.5703 -3.5697 4.8263 38 1 0.3691 -2.2177 5.9855 39 1 0.0176 -5.0737 6.4854 40 1 -0.1835 -3.7213 7.6442 41 1 1.8990 -5.1313 8.2720 42 1 4.9001 -2.6393 6.2326 43 1 6.3299 -1.2251 4.8204 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265607818.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:57 Heat of formation + Delta-G solvation = -46.428767 kcal Electronic energy + Delta-G solvation = -29330.273800 eV Core-core repulsion = 25098.346458 eV Total energy + Delta-G solvation = -4231.927342 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.59017 -41.82814 -39.67086 -38.08766 -36.90616 -35.39179 -34.42252 -33.01592 -31.40812 -29.93178 -29.19987 -28.83318 -26.29684 -25.24994 -24.50508 -23.81764 -22.61173 -21.82089 -20.42646 -18.90639 -18.13824 -17.52421 -17.17930 -17.13197 -16.51839 -16.19021 -16.01630 -15.33531 -15.20417 -15.12235 -14.55563 -14.47471 -14.29994 -14.12881 -14.03383 -13.53382 -13.29195 -12.98489 -12.92155 -12.67971 -12.52543 -12.36787 -12.22723 -11.65634 -11.58955 -11.32653 -11.06209 -10.87151 -10.75550 -10.35112 -10.30198 -10.23178 -10.18634 -9.65348 -9.28021 -9.18804 -8.97990 -8.44381 -7.95563 -7.65949 -6.09076 -4.17332 0.93374 1.06119 1.98559 2.66069 3.20588 3.27710 3.32943 3.33231 3.35392 3.60324 3.82472 3.89951 4.34365 4.36522 4.39966 4.41324 4.71754 4.82097 4.90750 5.00111 5.13218 5.16757 5.22505 5.33448 5.40101 5.68931 5.75768 5.89950 6.06293 6.10480 6.13773 6.31085 6.34362 6.60617 6.71450 6.78175 6.86307 7.00678 7.02086 7.35793 7.48433 7.68454 7.98289 8.07995 8.15792 8.43739 8.77647 8.95561 9.49097 10.96307 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.015292 B = 0.003294 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.591428 B = 8498.702910 C = 9388.351445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.258 3.742 3 H 0.065 0.935 4 C -0.528 4.528 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.582 5.582 13 C 0.082 3.918 14 C 0.548 3.452 15 O -0.533 6.533 16 C -0.120 4.120 17 C -0.103 4.103 18 C 0.168 3.832 19 N -0.567 5.567 20 C 0.081 3.919 21 C 0.093 3.907 22 N -0.737 5.737 23 C 0.702 3.298 24 O -0.569 6.569 25 C -0.113 4.113 26 C -0.130 4.130 27 C 0.121 3.879 28 F -0.123 7.123 29 H 0.012 0.988 30 H 0.094 0.906 31 H 0.030 0.970 32 H 0.264 0.736 33 H 0.041 0.959 34 H 0.084 0.916 35 H 0.055 0.945 36 H 0.142 0.858 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.433 0.567 42 H 0.168 0.832 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.068 -12.142 19.784 23.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.159 3.841 3 H 0.082 0.918 4 C -0.567 4.567 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.313 5.313 13 C -0.062 4.062 14 C 0.333 3.667 15 O -0.411 6.411 16 C -0.124 4.124 17 C -0.124 4.124 18 C 0.075 3.925 19 N -0.294 5.294 20 C -0.042 4.042 21 C -0.032 4.032 22 N -0.399 5.399 23 C 0.402 3.598 24 O -0.446 6.446 25 C -0.133 4.133 26 C -0.150 4.150 27 C 0.100 3.900 28 F -0.101 7.101 29 H 0.031 0.969 30 H 0.113 0.887 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.103 0.897 35 H 0.074 0.926 36 H 0.159 0.841 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.276 0.724 42 H 0.185 0.815 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -2.428 -11.363 19.591 22.777 hybrid contribution 0.201 -0.733 -0.736 1.058 sum -2.227 -12.095 18.855 22.512 Atomic orbital electron populations 1.22080 0.97965 0.99403 1.00921 1.19003 0.91021 0.94571 0.79541 0.91767 1.21275 1.32034 1.13162 0.90233 0.92216 1.24883 0.94873 0.94956 0.98951 1.69870 1.36179 1.22530 1.23938 0.86541 0.79348 0.79521 0.81907 1.20218 1.21143 1.20166 1.48183 1.48235 1.11635 1.23201 1.21751 0.98594 0.83376 1.02500 1.17940 0.79851 0.86838 0.82063 1.90782 1.60587 1.14716 1.75051 1.20030 0.92906 1.00485 0.99022 1.20750 1.00560 0.97242 0.93890 1.17194 0.90064 0.93853 0.91427 1.44412 1.07816 1.43640 1.33572 1.22667 0.79781 1.01049 1.00727 1.22419 0.86852 0.98889 0.95041 1.45070 1.06943 1.49354 1.38522 1.15793 0.85039 0.79132 0.79792 1.90865 1.15450 1.69175 1.69114 1.21543 0.91400 0.99054 1.01352 1.20992 1.01314 0.98213 0.94471 1.17651 0.87576 0.93274 0.91519 1.91563 1.73103 1.71853 1.73629 0.96937 0.88726 0.95128 0.92570 0.94046 0.89720 0.92623 0.84076 0.88575 0.88712 0.89234 0.89329 0.72448 0.81527 0.83786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 8.97 37.16 0.33 -3.05 16 2 C 0.26 6.57 2.63 -69.08 -0.18 6.38 16 3 H 0.06 1.91 6.91 -51.93 -0.36 1.55 16 4 C -0.53 -14.21 7.96 -34.44 -0.27 -14.48 16 5 H 0.06 1.58 7.42 -52.49 -0.39 1.19 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.89 -24.93 11.32 55.43 0.63 -24.30 16 8 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 9 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 N -0.58 -12.46 2.75 -176.43 -0.49 -12.95 16 13 C 0.08 1.34 8.01 59.85 0.48 1.82 16 14 C 0.55 11.95 7.00 -12.39 -0.09 11.86 16 15 O -0.53 -13.87 16.00 5.30 0.08 -13.78 16 16 C -0.12 -2.07 4.89 -104.93 -0.51 -2.59 16 17 C -0.10 -1.38 7.22 -38.99 -0.28 -1.66 16 18 C 0.17 2.10 6.61 -83.70 -0.55 1.55 16 19 N -0.57 -5.72 3.16 -118.27 -0.37 -6.09 16 20 C 0.08 0.46 6.48 -3.16 -0.02 0.44 16 21 C 0.09 0.32 8.06 -3.16 -0.03 0.29 16 22 N -0.74 -4.68 6.37 -64.70 -0.41 -5.09 16 23 C 0.70 7.56 8.52 -88.40 -0.75 6.81 16 24 O -0.57 -8.10 14.75 5.28 0.08 -8.02 16 25 C -0.11 -1.49 9.28 -39.33 -0.36 -1.85 16 26 C -0.13 -1.77 10.01 -39.59 -0.40 -2.16 16 27 C 0.12 2.05 7.25 -38.96 -0.28 1.76 16 28 F -0.12 -2.39 16.51 2.25 0.04 -2.35 16 29 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 31 H 0.03 0.64 7.67 -51.93 -0.40 0.24 16 32 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 33 H 0.04 0.54 7.09 -51.93 -0.37 0.18 16 34 H 0.08 1.47 7.10 -51.93 -0.37 1.10 16 35 H 0.06 0.82 6.27 -51.93 -0.33 0.49 16 36 H 0.14 1.61 5.55 -52.48 -0.29 1.32 16 37 H 0.10 0.44 8.11 -51.93 -0.42 0.02 16 38 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 40 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 41 H 0.43 1.91 8.96 -40.82 -0.37 1.55 16 42 H 0.17 2.25 5.26 -52.49 -0.28 1.97 16 43 H 0.14 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 355.26 15.07 5.35 5.35 Total: -1.00 -35.45 355.26 -8.25 -43.70 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -5.13 Total: 0.75 kcal Atomic # 6 Polarization: 9.84 SS G_CDS: -3.01 Total: 6.82 kcal Atomic # 7 Polarization: -47.78 SS G_CDS: -0.64 Total: -48.43 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: 0.16 Total: -21.81 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 0.04 Total: -2.35 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -35.45 -8.25 -43.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265607818.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.727 kcal (2) G-P(sol) polarization free energy of solvation -35.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds