Wall clock time and date at job start Tue Mar 31 2020 18:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47246 * 2 1 4 4 C 1.50693 * 109.47497 * 239.99562 * 2 1 3 5 5 H 1.08001 * 120.00625 * 240.00358 * 4 2 1 6 6 C 1.37877 * 120.00034 * 60.00520 * 4 2 1 7 7 N 1.31520 * 119.99635 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00328 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47145 * 59.99813 * 8 6 4 10 10 H 1.48505 * 109.47152 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47081 * 299.99718 * 8 6 4 12 12 N 1.46510 * 109.46601 * 119.99771 * 2 1 3 13 13 C 1.46499 * 120.00132 * 60.00526 * 12 2 1 14 14 C 1.34776 * 119.99467 * 239.99806 * 12 2 1 15 15 O 1.21571 * 120.00432 * 4.92724 * 14 12 2 16 16 C 1.47707 * 119.99708 * 184.92013 * 14 12 2 17 17 C 1.39601 * 120.13521 * 310.63002 * 16 14 12 18 18 C 1.38471 * 119.80561 * 179.97438 * 17 16 14 19 19 N 1.40091 * 119.96388 * 179.97438 * 18 17 16 20 20 C 1.47048 * 125.40806 * 354.09955 * 19 18 17 21 21 C 1.54108 * 103.86413 * 180.02562 * 20 19 18 22 22 N 1.47051 * 103.86074 * 0.02562 * 21 20 19 23 23 C 1.33945 * 125.41344 * 174.11238 * 19 18 17 24 24 O 1.21592 * 123.04042 * 0.02562 * 23 19 18 25 25 C 1.39037 * 120.07636 * 0.25036 * 18 17 16 26 26 C 1.38121 * 120.26531 * 359.49161 * 25 18 17 27 27 C 1.38330 * 120.19733 * 0.50902 * 26 25 18 28 28 F 1.35094 * 120.03720 * 179.72550 * 27 26 25 29 29 H 1.08990 * 109.47484 * 299.99995 * 1 2 3 30 30 H 1.09001 * 109.47024 * 60.00699 * 1 2 3 31 31 H 1.09006 * 109.47196 * 179.97438 * 1 2 3 32 32 H 0.97001 * 119.99665 * 180.02562 * 7 6 4 33 33 H 1.09000 * 109.46508 * 264.83867 * 13 12 2 34 34 H 1.08999 * 109.47113 * 24.83536 * 13 12 2 35 35 H 1.08994 * 109.46907 * 144.83831 * 13 12 2 36 36 H 1.08007 * 120.09855 * 359.97438 * 17 16 14 37 37 H 1.08999 * 110.54803 * 61.41300 * 20 19 18 38 38 H 1.09000 * 110.55529 * 298.60416 * 20 19 18 39 39 H 1.09001 * 110.54656 * 241.40878 * 21 20 19 40 40 H 1.08995 * 110.54968 * 118.59838 * 21 20 19 41 41 H 0.96998 * 125.40993 * 179.73662 * 22 21 20 42 42 H 1.08001 * 119.86493 * 179.74431 * 25 18 17 43 43 H 1.07997 * 119.89420 * 180.25548 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5886 -1.1312 6 6 1.6995 -0.2394 -2.4827 7 7 0.9430 0.8296 -2.6034 8 14 2.3216 -1.1205 -4.0078 9 1 1.8260 -2.5204 -4.0076 10 1 1.8263 -0.4207 -5.2204 11 1 3.8066 -1.1211 -4.0079 12 7 2.0182 -0.6906 1.1963 13 6 1.6643 -2.0932 1.4281 14 6 2.7931 -0.0355 2.0834 15 8 3.0132 1.1512 1.9384 16 6 3.3747 -0.7596 3.2320 17 6 2.5662 -1.5680 4.0331 18 6 3.1187 -2.2441 5.1078 19 7 2.3104 -3.0558 5.9142 20 6 0.8492 -3.1795 5.8051 21 6 0.4798 -4.1843 6.9137 22 7 1.7721 -4.5195 7.5301 23 6 2.7456 -3.8424 6.9072 24 8 3.9181 -3.9322 7.2163 25 6 4.4736 -2.1137 5.3911 26 6 5.2774 -1.3188 4.5974 27 6 4.7372 -0.6384 3.5209 28 9 5.5253 0.1425 2.7501 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 0.7084 1.1608 -3.4844 33 1 0.7893 -2.1447 2.0760 34 1 1.4401 -2.5735 0.4757 35 1 2.5003 -2.6047 1.9052 36 1 1.5129 -1.6659 3.8152 37 1 0.5703 -3.5697 4.8263 38 1 0.3691 -2.2177 5.9855 39 1 0.0176 -5.0737 6.4854 40 1 -0.1835 -3.7213 7.6442 41 1 1.8990 -5.1313 8.2720 42 1 4.9001 -2.6393 6.2326 43 1 6.3299 -1.2251 4.8204 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265607818.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:56 Heat of formation + Delta-G solvation = -71.441439 kcal Electronic energy + Delta-G solvation = -29331.358431 eV Core-core repulsion = 25098.346458 eV Total energy + Delta-G solvation = -4233.011972 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.95735 -42.56229 -41.12883 -39.37001 -37.67412 -37.21057 -35.26201 -34.86070 -32.82671 -30.91753 -30.68534 -29.61233 -27.74890 -27.30015 -25.63115 -24.70619 -23.60417 -22.97839 -21.72196 -20.28236 -18.99869 -18.70565 -18.58679 -18.21233 -17.75020 -17.52812 -17.49784 -16.74694 -16.64105 -16.09818 -16.02605 -15.73051 -15.28730 -15.18309 -14.85207 -14.77151 -14.50775 -14.25080 -14.18240 -13.96811 -13.79455 -13.58306 -13.16269 -13.10892 -12.96887 -12.85230 -12.76230 -12.69074 -12.49566 -12.19030 -12.12817 -11.31358 -11.23376 -11.18184 -10.84059 -10.52356 -10.22965 -10.17394 -9.41924 -8.91440 -8.15474 -6.32095 -0.27883 -0.01611 1.26492 1.41286 1.44453 1.51109 1.61669 1.89089 2.21328 2.44033 2.56604 2.85768 3.12805 3.15815 3.34970 3.46711 3.61408 3.85453 3.99836 4.15417 4.23082 4.37155 4.41098 4.59325 4.62572 4.72003 4.77440 4.81433 4.91610 4.93208 4.93727 5.00387 5.05980 5.07350 5.18987 5.32483 5.47001 5.56766 5.65249 5.82031 6.02856 6.10900 6.14994 6.31600 6.68396 6.74313 7.19818 7.36554 7.40999 8.88902 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.015292 B = 0.003294 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.591428 B = 8498.702910 C = 9388.351445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.262 3.738 3 H 0.007 0.993 4 C -0.542 4.542 5 H 0.060 0.940 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.963 3.037 9 H -0.259 1.259 10 H -0.282 1.282 11 H -0.281 1.281 12 N -0.585 5.585 13 C 0.077 3.923 14 C 0.541 3.459 15 O -0.592 6.592 16 C -0.134 4.134 17 C -0.088 4.088 18 C 0.184 3.816 19 N -0.570 5.570 20 C 0.066 3.934 21 C 0.096 3.904 22 N -0.723 5.723 23 C 0.691 3.309 24 O -0.611 6.611 25 C -0.112 4.112 26 C -0.114 4.114 27 C 0.088 3.912 28 F -0.148 7.148 29 H 0.024 0.976 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.265 0.735 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.166 0.834 37 H 0.114 0.886 38 H 0.108 0.892 39 H 0.116 0.884 40 H 0.114 0.886 41 H 0.442 0.558 42 H 0.169 0.831 43 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.799 -15.392 21.392 26.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.160 3.840 3 H 0.025 0.975 4 C -0.581 4.581 5 H 0.078 0.922 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.788 3.212 9 H -0.183 1.183 10 H -0.208 1.208 11 H -0.207 1.207 12 N -0.314 5.314 13 C -0.065 4.065 14 C 0.329 3.671 15 O -0.474 6.474 16 C -0.139 4.139 17 C -0.110 4.110 18 C 0.089 3.911 19 N -0.296 5.296 20 C -0.055 4.055 21 C -0.028 4.028 22 N -0.384 5.384 23 C 0.391 3.609 24 O -0.492 6.492 25 C -0.133 4.133 26 C -0.133 4.133 27 C 0.067 3.933 28 F -0.127 7.127 29 H 0.043 0.957 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.183 0.817 37 H 0.132 0.868 38 H 0.126 0.874 39 H 0.134 0.866 40 H 0.132 0.868 41 H 0.286 0.714 42 H 0.186 0.814 43 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -4.238 -14.696 21.243 26.176 hybrid contribution 0.690 0.216 -1.096 1.313 sum -3.548 -14.480 20.147 25.063 Atomic orbital electron populations 1.21847 0.96222 1.00547 1.00183 1.18627 0.92270 0.92035 0.81065 0.97549 1.21530 1.32162 1.13233 0.91140 0.92216 1.25701 0.94983 0.95603 1.01901 1.70013 1.37085 1.23736 1.24572 0.85534 0.78244 0.79200 0.78194 1.18341 1.20779 1.20689 1.48162 1.47961 1.13478 1.21837 1.22048 1.01040 0.80234 1.03171 1.18599 0.79107 0.86419 0.82998 1.90736 1.62446 1.17442 1.76785 1.19710 0.93450 1.02155 0.98597 1.20752 1.01059 0.96015 0.93170 1.17169 0.90104 0.92982 0.90886 1.44511 1.09558 1.42747 1.32835 1.23139 0.76923 1.02712 1.02706 1.22718 0.85562 0.99612 0.94863 1.45085 1.07213 1.48149 1.38001 1.16100 0.85136 0.79549 0.80099 1.90830 1.17514 1.70547 1.70308 1.21676 0.91966 0.98577 1.01036 1.21145 1.02494 0.96852 0.92837 1.18011 0.87628 0.94768 0.92921 1.91493 1.73735 1.72877 1.74558 0.95734 0.91369 0.92815 0.92537 0.89821 0.90589 0.90774 0.81668 0.86835 0.87425 0.86611 0.86810 0.71360 0.81392 0.81554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.05 8.97 71.98 0.65 -5.40 16 2 C 0.26 13.70 2.63 44.24 0.12 13.81 16 3 H 0.01 0.41 6.91 -2.39 -0.02 0.40 16 4 C -0.54 -29.65 7.96 25.60 0.20 -29.44 16 5 H 0.06 3.18 7.42 -2.91 -0.02 3.16 16 6 C 0.02 0.99 5.30 84.65 0.45 1.44 16 7 N -0.92 -52.72 11.32 21.45 0.24 -52.47 16 8 Si 0.96 43.14 29.54 68.60 2.03 45.16 16 9 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 10 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 12 N -0.59 -25.20 2.75 -830.37 -2.29 -27.49 16 13 C 0.08 2.34 8.01 127.77 1.02 3.36 16 14 C 0.54 24.34 7.00 86.75 0.61 24.95 16 15 O -0.59 -32.80 16.00 -3.94 -0.06 -32.87 16 16 C -0.13 -4.65 4.89 -20.07 -0.10 -4.75 16 17 C -0.09 -2.17 7.22 22.65 0.16 -2.01 16 18 C 0.18 4.15 6.61 38.07 0.25 4.40 16 19 N -0.57 -9.59 3.16 -646.81 -2.04 -11.63 16 20 C 0.07 0.44 6.48 86.65 0.56 1.00 16 21 C 0.10 0.17 8.06 86.65 0.70 0.87 16 22 N -0.72 -6.53 6.37 -477.34 -3.04 -9.58 16 23 C 0.69 13.00 8.52 179.57 1.53 14.53 16 24 O -0.61 -16.47 14.75 -4.01 -0.06 -16.53 16 25 C -0.11 -2.77 9.28 22.43 0.21 -2.56 16 26 C -0.11 -3.01 10.01 22.26 0.22 -2.79 16 27 C 0.09 3.03 7.25 22.67 0.16 3.19 16 28 F -0.15 -6.07 16.51 44.97 0.74 -5.32 16 29 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.07 3.57 6.07 -2.39 -0.01 3.56 16 31 H 0.05 2.20 7.67 -2.38 -0.02 2.19 16 32 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 33 H 0.08 1.84 7.09 -2.39 -0.02 1.83 16 34 H 0.08 2.48 7.10 -2.39 -0.02 2.46 16 35 H 0.07 1.99 6.27 -2.39 -0.01 1.98 16 36 H 0.17 3.14 5.55 -2.91 -0.02 3.12 16 37 H 0.11 0.41 8.11 -2.39 -0.02 0.39 16 38 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.12 -0.29 8.14 -2.39 -0.02 -0.31 16 40 H 0.11 -0.27 8.14 -2.39 -0.02 -0.28 16 41 H 0.44 2.45 8.96 -92.71 -0.83 1.62 16 42 H 0.17 4.30 5.26 -2.91 -0.02 4.28 16 43 H 0.17 3.51 8.06 -2.91 -0.02 3.48 16 Total: -1.00 -83.36 355.26 2.51 -80.85 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: 0.25 Total: 9.26 kcal Atomic # 6 Polarization: 13.87 SS G_CDS: 6.75 Total: 20.62 kcal Atomic # 7 Polarization: -94.04 SS G_CDS: -7.13 Total: -101.17 kcal Atomic # 8 Polarization: -49.27 SS G_CDS: -0.12 Total: -49.39 kcal Atomic # 9 Polarization: -6.07 SS G_CDS: 0.74 Total: -5.32 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.16 kcal Total: -83.36 2.51 -80.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265607818.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.406 kcal (2) G-P(sol) polarization free energy of solvation -83.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds