Wall clock time and date at job start Tue Mar 31 2020 18:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21292 * 119.99868 * 2 1 4 4 N 1.34776 * 120.00174 * 180.02562 * 2 1 3 5 5 C 1.40074 * 120.00079 * 186.08510 * 4 2 1 6 6 C 1.38473 * 120.00730 * 28.31135 * 5 4 2 7 7 C 1.39573 * 119.80597 * 179.97438 * 6 5 4 8 8 C 1.47734 * 120.09086 * 179.97438 * 7 6 5 9 9 O 1.21566 * 120.00297 * 31.72700 * 8 7 6 10 10 N 1.34774 * 120.00089 * 211.73184 * 8 7 6 11 11 C 1.46963 * 120.59710 * 180.57756 * 10 8 7 12 12 C 1.53362 * 108.63768 * 235.20315 * 11 10 8 13 13 N 1.46971 * 108.63963 * 310.57590 * 12 11 10 14 14 C 1.36933 * 120.59832 * 235.20638 * 13 12 11 15 15 H 1.08005 * 119.99702 * 10.28124 * 14 13 12 16 16 C 1.38806 * 120.00118 * 190.00973 * 14 13 12 17 17 N 1.31616 * 120.00257 * 222.32159 * 16 14 13 18 18 Si 1.86803 * 119.99952 * 42.32486 * 16 14 13 19 19 H 1.48496 * 109.47559 * 94.96928 * 18 16 14 20 20 H 1.48496 * 109.47236 * 214.97293 * 18 16 14 21 21 H 1.48504 * 109.46781 * 334.96880 * 18 16 14 22 22 C 1.46966 * 118.80620 * 55.47346 * 13 12 11 23 23 C 1.46968 * 120.59473 * 0.55555 * 10 8 7 24 24 C 1.39664 * 119.82012 * 0.25267 * 7 6 5 25 25 C 1.37899 * 120.01149 * 359.46779 * 24 7 6 26 26 C 1.38502 * 120.19551 * 0.55639 * 25 24 7 27 27 F 1.35101 * 119.91296 * 179.71466 * 26 25 24 28 28 H 1.08996 * 109.47191 * 239.99714 * 1 2 3 29 29 H 1.09002 * 109.47324 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.47134 * 119.99768 * 1 2 3 31 31 H 0.96994 * 120.00009 * 6.08373 * 4 2 1 32 32 H 1.07997 * 120.09665 * 359.95836 * 6 5 4 33 33 H 1.09003 * 109.60947 * 115.46133 * 11 10 8 34 34 H 1.09001 * 109.74963 * 355.03757 * 11 10 8 35 35 H 1.09003 * 109.61174 * 190.82948 * 12 11 10 36 36 H 1.09000 * 109.61286 * 70.31961 * 12 11 10 37 37 H 0.96998 * 119.99893 * 179.97438 * 17 16 14 38 38 H 1.09005 * 109.60640 * 64.27256 * 22 13 12 39 39 H 1.08995 * 109.60693 * 184.77803 * 22 13 12 40 40 H 1.08994 * 109.61160 * 244.54285 * 23 10 8 41 41 H 1.09011 * 109.60842 * 4.88493 * 23 10 8 42 42 H 1.07999 * 119.99380 * 179.74936 * 24 7 6 43 43 H 1.08002 * 119.90452 * 180.27176 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5757 -1.1706 0.1281 6 6 4.2105 -0.1486 0.8136 7 6 5.6005 -0.1565 0.9396 8 6 6.2843 0.9311 1.6691 9 8 5.7308 1.4785 2.6028 10 7 7.5217 1.3165 1.2994 11 6 8.2190 2.3883 2.0239 12 6 8.6308 3.4714 1.0193 13 7 9.3072 2.8271 -0.1154 14 6 10.5645 3.2186 -0.4910 15 1 11.1340 3.8843 0.1406 16 6 11.1092 2.7554 -1.6807 17 7 12.3682 2.3743 -1.7238 18 14 10.0552 2.6728 -3.2208 19 1 10.2525 3.9072 -4.0224 20 1 10.4496 1.4903 -4.0277 21 1 8.6256 2.5553 -2.8365 22 6 8.6075 1.7591 -0.8433 23 6 8.1981 0.6721 0.1649 24 6 6.3437 -1.1923 0.3692 25 6 5.7034 -2.2094 -0.3069 26 6 4.3241 -2.2019 -0.4328 27 9 3.7032 -3.1982 -1.1013 28 1 -0.3633 -0.5139 0.8899 29 1 -0.3634 1.0277 0.0005 30 1 -0.3633 -0.5138 -0.8900 31 1 1.7000 -2.0048 -0.0899 32 1 3.6317 0.6525 1.2491 33 1 9.1069 1.9837 2.5099 34 1 7.5553 2.8182 2.7740 35 1 9.3108 4.1756 1.4987 36 1 7.7445 3.9982 0.6655 37 1 12.7487 2.0503 -2.5551 38 1 7.7196 2.1669 -1.3265 39 1 9.2722 1.3322 -1.5942 40 1 9.0844 0.1454 0.5186 41 1 7.5190 -0.0343 -0.3127 42 1 7.4197 -1.1990 0.4615 43 1 6.2795 -3.0118 -0.7436 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265736515.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:05 Heat of formation + Delta-G solvation = -11.597361 kcal Electronic energy + Delta-G solvation = -29309.037698 eV Core-core repulsion = 25078.620760 eV Total energy + Delta-G solvation = -4230.416938 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.26583 -40.96505 -40.03443 -38.17182 -37.03641 -35.28796 -34.01951 -31.96581 -31.37232 -31.09275 -30.39869 -28.85682 -27.28931 -24.50741 -24.05047 -23.17469 -22.79531 -21.02188 -20.87572 -19.41136 -18.15972 -17.96725 -17.41272 -16.86775 -16.55227 -16.11394 -15.87814 -15.61138 -15.30255 -15.24411 -14.72589 -14.47917 -14.29825 -14.21931 -13.89256 -13.59582 -13.50972 -13.13304 -12.93140 -12.86966 -12.68052 -12.57897 -12.40218 -12.14177 -12.10526 -11.56342 -11.12658 -10.88726 -10.73813 -10.36073 -10.33554 -10.21453 -10.19560 -9.58410 -9.29853 -9.09489 -8.80042 -8.42094 -8.19285 -7.22339 -6.10217 -3.16600 0.50935 0.90515 2.14688 2.53937 2.77442 3.18920 3.33990 3.46829 3.55568 3.58469 3.80799 4.24004 4.44367 4.48069 4.50912 4.77075 4.79767 4.81021 4.89080 5.00432 5.10957 5.19101 5.36432 5.51502 5.55747 5.58050 5.74712 5.76333 5.80893 5.87754 5.93062 6.04339 6.07489 6.12306 6.20869 6.44236 6.55169 6.56466 6.73337 6.87330 6.88272 7.66328 7.68675 7.77067 8.16506 8.35244 8.82925 9.66529 10.02271 11.01402 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014282 B = 0.003458 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.030490 B = 8094.580357 C = 8627.229111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.508 3.492 3 O -0.514 6.514 4 N -0.672 5.672 5 C 0.108 3.892 6 C -0.047 4.047 7 C -0.111 4.111 8 C 0.556 3.444 9 O -0.546 6.546 10 N -0.588 5.588 11 C 0.096 3.904 12 C 0.137 3.863 13 N -0.601 5.601 14 C -0.275 4.275 15 H 0.090 0.910 16 C 0.034 3.966 17 N -0.870 5.870 18 Si 0.818 3.182 19 H -0.296 1.296 20 H -0.292 1.292 21 H -0.255 1.255 22 C 0.134 3.866 23 C 0.053 3.947 24 C -0.089 4.089 25 C -0.138 4.138 26 C 0.086 3.914 27 F -0.136 7.136 28 H 0.093 0.907 29 H 0.099 0.901 30 H 0.092 0.908 31 H 0.415 0.585 32 H 0.159 0.841 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.028 0.972 37 H 0.262 0.738 38 H 0.033 0.967 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.101 0.899 42 H 0.162 0.838 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.849 -12.616 3.855 24.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.297 3.703 3 O -0.388 6.388 4 N -0.318 5.318 5 C 0.012 3.988 6 C -0.068 4.068 7 C -0.115 4.115 8 C 0.344 3.656 9 O -0.425 6.425 10 N -0.319 5.319 11 C -0.028 4.028 12 C 0.010 3.990 13 N -0.324 5.324 14 C -0.401 4.401 15 H 0.107 0.893 16 C -0.167 4.167 17 N -0.510 5.510 18 Si 0.645 3.355 19 H -0.224 1.224 20 H -0.219 1.219 21 H -0.180 1.180 22 C 0.007 3.993 23 C -0.070 4.070 24 C -0.108 4.108 25 C -0.157 4.157 26 C 0.064 3.936 27 F -0.115 7.115 28 H 0.112 0.888 29 H 0.118 0.882 30 H 0.110 0.890 31 H 0.251 0.749 32 H 0.176 0.824 33 H 0.089 0.911 34 H 0.106 0.894 35 H 0.094 0.906 36 H 0.046 0.954 37 H 0.072 0.928 38 H 0.051 0.949 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.118 0.882 42 H 0.179 0.821 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -20.603 -11.587 4.263 24.019 hybrid contribution -0.710 -0.656 -1.509 1.792 sum -21.313 -12.242 2.755 24.732 Atomic orbital electron populations 1.21924 0.90145 1.06310 1.04677 1.21114 0.91124 0.82883 0.75216 1.90806 1.70366 1.31097 1.46544 1.43486 1.04594 1.10546 1.73151 1.17550 0.83582 0.96941 1.00678 1.21178 0.93269 0.97766 0.94583 1.19922 0.93629 0.96778 1.01143 1.18086 0.81203 0.82682 0.83656 1.90748 1.65383 1.56567 1.29794 1.47892 1.15152 1.36868 1.31967 1.22267 0.96317 0.88804 0.95380 1.21273 0.96046 0.93136 0.88556 1.44394 1.16619 1.38220 1.33213 1.18811 0.88002 1.29028 1.04308 0.89252 1.24794 0.94899 0.98456 0.98524 1.70246 1.15000 1.39050 1.26693 0.88093 0.83360 0.77342 0.86731 1.22392 1.21918 1.17963 1.21822 0.95623 0.88907 0.92906 1.23532 0.97463 0.97742 0.88298 1.21783 1.01490 0.92218 0.95316 1.20965 0.91637 1.00729 1.02392 1.17594 0.90884 0.87802 0.97364 1.91481 1.82876 1.59023 1.78073 0.88816 0.88248 0.88970 0.74907 0.82362 0.91058 0.89445 0.90566 0.95432 0.92822 0.94879 0.90547 0.90225 0.88205 0.82121 0.83395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.84 10.32 36.00 0.37 -0.47 16 2 C 0.51 5.09 7.70 -10.99 -0.08 5.01 16 3 O -0.51 -7.77 14.48 5.55 0.08 -7.69 16 4 N -0.67 -6.06 5.28 -9.84 -0.05 -6.11 16 5 C 0.11 1.28 6.37 -83.64 -0.53 0.75 16 6 C -0.05 -0.68 8.23 -39.00 -0.32 -1.01 16 7 C -0.11 -1.64 5.53 -104.99 -0.58 -2.22 16 8 C 0.56 9.81 7.45 -12.38 -0.09 9.72 16 9 O -0.55 -11.04 16.16 5.31 0.09 -10.96 16 10 N -0.59 -10.31 2.95 -173.37 -0.51 -10.82 16 11 C 0.10 1.69 6.59 -3.60 -0.02 1.67 16 12 C 0.14 2.69 6.67 -3.60 -0.02 2.67 16 13 N -0.60 -13.92 2.91 -171.77 -0.50 -14.42 16 14 C -0.28 -7.38 9.96 -15.06 -0.15 -7.53 16 15 H 0.09 2.52 7.94 -52.48 -0.42 2.11 16 16 C 0.03 0.95 4.95 -17.43 -0.09 0.86 16 17 N -0.87 -25.42 13.97 55.49 0.78 -24.64 16 18 Si 0.82 20.29 26.01 -169.99 -4.42 15.87 16 19 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 20 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 21 H -0.25 -6.00 4.73 56.52 0.27 -5.73 16 22 C 0.13 2.83 4.51 -3.37 -0.02 2.81 16 23 C 0.05 0.90 5.05 -3.37 -0.02 0.88 16 24 C -0.09 -1.07 7.43 -39.17 -0.29 -1.36 16 25 C -0.14 -1.42 10.00 -39.61 -0.40 -1.82 16 26 C 0.09 0.93 7.31 -39.12 -0.29 0.64 16 27 F -0.14 -1.36 16.85 2.25 0.04 -1.32 16 28 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.10 0.53 8.12 -51.93 -0.42 0.11 16 30 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.41 2.30 8.52 -40.82 -0.35 1.95 16 32 H 0.16 2.61 5.95 -52.49 -0.31 2.30 16 33 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.09 1.50 7.00 -51.93 -0.36 1.13 16 35 H 0.08 1.43 7.85 -51.93 -0.41 1.03 16 36 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 38 H 0.03 0.72 7.14 -51.93 -0.37 0.35 16 39 H 0.08 1.71 4.08 -51.93 -0.21 1.50 16 40 H 0.08 1.31 8.13 -51.93 -0.42 0.89 16 41 H 0.10 1.42 3.56 -53.48 -0.19 1.23 16 42 H 0.16 1.75 5.31 -52.49 -0.28 1.47 16 43 H 0.15 1.14 8.06 -52.49 -0.42 0.71 16 LS Contribution 348.18 15.07 5.25 5.25 Total: -1.00 -34.81 348.18 -6.91 -41.73 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -5.13 Total: 2.52 kcal Atomic # 6 Polarization: 13.12 SS G_CDS: -2.53 Total: 10.60 kcal Atomic # 7 Polarization: -55.70 SS G_CDS: -0.29 Total: -55.99 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: 0.17 Total: -18.65 kcal Atomic # 9 Polarization: -1.36 SS G_CDS: 0.04 Total: -1.32 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -4.42 Total: 15.87 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.81 -6.91 -41.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265736515.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.131 kcal (2) G-P(sol) polarization free energy of solvation -34.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds