Wall clock time and date at job start Tue Mar 31 2020 18:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21292 * 119.99868 * 2 1 4 4 N 1.34776 * 120.00174 * 180.02562 * 2 1 3 5 5 C 1.40074 * 120.00079 * 186.08510 * 4 2 1 6 6 C 1.38473 * 120.00730 * 28.31135 * 5 4 2 7 7 C 1.39573 * 119.80597 * 179.97438 * 6 5 4 8 8 C 1.47734 * 120.09086 * 179.97438 * 7 6 5 9 9 O 1.21566 * 120.00297 * 31.72700 * 8 7 6 10 10 N 1.34774 * 120.00089 * 211.73184 * 8 7 6 11 11 C 1.46963 * 120.59710 * 180.57756 * 10 8 7 12 12 C 1.53362 * 108.63768 * 235.20315 * 11 10 8 13 13 N 1.46971 * 108.63963 * 310.57590 * 12 11 10 14 14 C 1.36933 * 120.59832 * 235.20638 * 13 12 11 15 15 H 1.08005 * 119.99702 * 10.28124 * 14 13 12 16 16 C 1.38806 * 120.00118 * 190.00973 * 14 13 12 17 17 N 1.31616 * 120.00257 * 222.32159 * 16 14 13 18 18 Si 1.86803 * 119.99952 * 42.32486 * 16 14 13 19 19 H 1.48496 * 109.47559 * 94.96928 * 18 16 14 20 20 H 1.48496 * 109.47236 * 214.97293 * 18 16 14 21 21 H 1.48504 * 109.46781 * 334.96880 * 18 16 14 22 22 C 1.46966 * 118.80620 * 55.47346 * 13 12 11 23 23 C 1.46968 * 120.59473 * 0.55555 * 10 8 7 24 24 C 1.39664 * 119.82012 * 0.25267 * 7 6 5 25 25 C 1.37899 * 120.01149 * 359.46779 * 24 7 6 26 26 C 1.38502 * 120.19551 * 0.55639 * 25 24 7 27 27 F 1.35101 * 119.91296 * 179.71466 * 26 25 24 28 28 H 1.08996 * 109.47191 * 239.99714 * 1 2 3 29 29 H 1.09002 * 109.47324 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.47134 * 119.99768 * 1 2 3 31 31 H 0.96994 * 120.00009 * 6.08373 * 4 2 1 32 32 H 1.07997 * 120.09665 * 359.95836 * 6 5 4 33 33 H 1.09003 * 109.60947 * 115.46133 * 11 10 8 34 34 H 1.09001 * 109.74963 * 355.03757 * 11 10 8 35 35 H 1.09003 * 109.61174 * 190.82948 * 12 11 10 36 36 H 1.09000 * 109.61286 * 70.31961 * 12 11 10 37 37 H 0.96998 * 119.99893 * 179.97438 * 17 16 14 38 38 H 1.09005 * 109.60640 * 64.27256 * 22 13 12 39 39 H 1.08995 * 109.60693 * 184.77803 * 22 13 12 40 40 H 1.08994 * 109.61160 * 244.54285 * 23 10 8 41 41 H 1.09011 * 109.60842 * 4.88493 * 23 10 8 42 42 H 1.07999 * 119.99380 * 179.74936 * 24 7 6 43 43 H 1.08002 * 119.90452 * 180.27176 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5757 -1.1706 0.1281 6 6 4.2105 -0.1486 0.8136 7 6 5.6005 -0.1565 0.9396 8 6 6.2843 0.9311 1.6691 9 8 5.7308 1.4785 2.6028 10 7 7.5217 1.3165 1.2994 11 6 8.2190 2.3883 2.0239 12 6 8.6308 3.4714 1.0193 13 7 9.3072 2.8271 -0.1154 14 6 10.5645 3.2186 -0.4910 15 1 11.1340 3.8843 0.1406 16 6 11.1092 2.7554 -1.6807 17 7 12.3682 2.3743 -1.7238 18 14 10.0552 2.6728 -3.2208 19 1 10.2525 3.9072 -4.0224 20 1 10.4496 1.4903 -4.0277 21 1 8.6256 2.5553 -2.8365 22 6 8.6075 1.7591 -0.8433 23 6 8.1981 0.6721 0.1649 24 6 6.3437 -1.1923 0.3692 25 6 5.7034 -2.2094 -0.3069 26 6 4.3241 -2.2019 -0.4328 27 9 3.7032 -3.1982 -1.1013 28 1 -0.3633 -0.5139 0.8899 29 1 -0.3634 1.0277 0.0005 30 1 -0.3633 -0.5138 -0.8900 31 1 1.7000 -2.0048 -0.0899 32 1 3.6317 0.6525 1.2491 33 1 9.1069 1.9837 2.5099 34 1 7.5553 2.8182 2.7740 35 1 9.3108 4.1756 1.4987 36 1 7.7445 3.9982 0.6655 37 1 12.7487 2.0503 -2.5551 38 1 7.7196 2.1669 -1.3265 39 1 9.2722 1.3322 -1.5942 40 1 9.0844 0.1454 0.5186 41 1 7.5190 -0.0343 -0.3127 42 1 7.4197 -1.1990 0.4615 43 1 6.2795 -3.0118 -0.7436 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265736515.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:04 Heat of formation + Delta-G solvation = -36.253182 kcal Electronic energy + Delta-G solvation = -29310.106855 eV Core-core repulsion = 25078.620760 eV Total energy + Delta-G solvation = -4231.486095 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.09722 -41.99265 -41.16073 -39.27004 -38.59585 -36.26415 -35.63724 -33.67436 -32.66480 -32.17250 -31.52610 -29.63470 -28.94185 -25.97890 -25.33609 -24.54705 -24.04748 -22.40736 -21.73887 -20.77005 -19.40117 -18.98142 -18.47993 -18.19715 -17.67829 -17.26333 -17.08766 -16.87994 -16.51740 -16.29385 -16.18636 -16.01913 -15.56026 -15.36482 -15.17437 -14.82204 -14.72128 -14.36269 -14.13415 -14.10989 -13.94334 -13.63672 -13.53104 -13.40582 -13.09596 -12.92870 -12.69991 -12.50450 -12.11120 -12.06591 -11.97816 -11.71116 -11.20221 -11.07377 -10.96241 -10.68304 -10.09998 -9.89260 -9.33112 -9.07656 -8.20660 -5.24823 -0.48414 -0.03271 1.33080 1.33891 1.48895 1.53444 1.58548 1.77367 1.95902 2.43691 2.48909 2.87701 2.90754 3.26166 3.35143 3.54050 3.70685 3.86266 4.02215 4.07285 4.08980 4.20504 4.32139 4.36236 4.45765 4.51378 4.56870 4.61111 4.68753 4.70878 4.78066 4.79247 4.89237 4.94135 5.03426 5.07250 5.12668 5.15998 5.42588 5.65662 5.77845 6.05294 6.21971 6.31218 6.83768 6.96072 6.97861 7.63335 8.01865 8.93722 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014282 B = 0.003458 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.030490 B = 8094.580357 C = 8627.229111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.502 3.498 3 O -0.573 6.573 4 N -0.661 5.661 5 C 0.106 3.894 6 C -0.065 4.065 7 C -0.130 4.130 8 C 0.555 3.445 9 O -0.580 6.580 10 N -0.591 5.591 11 C 0.104 3.896 12 C 0.136 3.864 13 N -0.614 5.614 14 C -0.267 4.267 15 H 0.064 0.936 16 C -0.013 4.013 17 N -0.915 5.915 18 Si 0.879 3.121 19 H -0.313 1.313 20 H -0.287 1.287 21 H -0.236 1.236 22 C 0.127 3.873 23 C 0.064 3.936 24 C -0.088 4.088 25 C -0.122 4.122 26 C 0.095 3.905 27 F -0.125 7.125 28 H 0.120 0.880 29 H 0.092 0.908 30 H 0.121 0.879 31 H 0.433 0.567 32 H 0.131 0.869 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.025 0.975 37 H 0.263 0.737 38 H 0.029 0.971 39 H 0.066 0.934 40 H 0.088 0.912 41 H 0.133 0.867 42 H 0.176 0.824 43 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.112 -15.542 2.952 28.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.293 3.707 3 O -0.451 6.451 4 N -0.308 5.308 5 C 0.010 3.990 6 C -0.086 4.086 7 C -0.134 4.134 8 C 0.345 3.655 9 O -0.461 6.461 10 N -0.322 5.322 11 C -0.020 4.020 12 C 0.010 3.990 13 N -0.338 5.338 14 C -0.395 4.395 15 H 0.082 0.918 16 C -0.211 4.211 17 N -0.558 5.558 18 Si 0.706 3.294 19 H -0.242 1.242 20 H -0.214 1.214 21 H -0.160 1.160 22 C 0.001 3.999 23 C -0.059 4.059 24 C -0.107 4.107 25 C -0.140 4.140 26 C 0.073 3.927 27 F -0.104 7.104 28 H 0.138 0.862 29 H 0.111 0.889 30 H 0.139 0.861 31 H 0.273 0.727 32 H 0.149 0.851 33 H 0.095 0.905 34 H 0.110 0.890 35 H 0.098 0.902 36 H 0.043 0.957 37 H 0.072 0.928 38 H 0.047 0.953 39 H 0.084 0.916 40 H 0.107 0.893 41 H 0.150 0.850 42 H 0.193 0.807 43 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -22.940 -14.570 3.358 27.383 hybrid contribution -0.085 0.244 -1.167 1.195 sum -23.024 -14.326 2.191 27.206 Atomic orbital electron populations 1.21974 0.85926 1.06821 1.07264 1.22111 0.93058 0.82058 0.73458 1.90791 1.71850 1.33177 1.49304 1.43521 1.03637 1.11404 1.72245 1.17596 0.85011 0.96432 0.99989 1.20966 0.93224 0.98302 0.96099 1.19756 0.93805 0.97149 1.02675 1.18544 0.80775 0.82907 0.83263 1.90719 1.66005 1.57990 1.31402 1.47943 1.15327 1.36823 1.32068 1.22102 0.96664 0.88470 0.94764 1.21368 0.95686 0.93879 0.88066 1.44514 1.15983 1.39217 1.34037 1.18789 0.89132 1.27742 1.03833 0.91847 1.25242 0.95879 0.99327 1.00602 1.70296 1.16788 1.41560 1.27177 0.87137 0.82877 0.76455 0.82909 1.24220 1.21398 1.15979 1.21885 0.94782 0.89358 0.93888 1.23508 0.98593 0.96553 0.87219 1.21853 1.01955 0.91781 0.95102 1.21319 0.91495 1.00588 1.00633 1.17606 0.91146 0.87370 0.96592 1.91518 1.82777 1.58406 1.77678 0.86164 0.88866 0.86074 0.72720 0.85150 0.90492 0.89023 0.90234 0.95664 0.92823 0.95346 0.91609 0.89345 0.85004 0.80744 0.79826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 10.32 71.23 0.74 -0.45 16 2 C 0.50 9.53 7.70 87.66 0.68 10.20 16 3 O -0.57 -17.75 14.48 -3.07 -0.04 -17.80 16 4 N -0.66 -10.59 5.28 -303.42 -1.60 -12.19 16 5 C 0.11 2.33 6.37 38.12 0.24 2.57 16 6 C -0.06 -1.86 8.23 22.65 0.19 -1.68 16 7 C -0.13 -3.72 5.53 -20.10 -0.11 -3.83 16 8 C 0.56 19.44 7.45 86.75 0.65 20.09 16 9 O -0.58 -23.92 16.16 -3.92 -0.06 -23.98 16 10 N -0.59 -20.17 2.95 -820.69 -2.42 -22.59 16 11 C 0.10 3.62 6.59 86.41 0.57 4.19 16 12 C 0.14 5.36 6.67 86.41 0.58 5.94 16 13 N -0.61 -28.24 2.91 -697.35 -2.03 -30.28 16 14 C -0.27 -14.50 9.96 84.03 0.84 -13.66 16 15 H 0.06 3.70 7.94 -2.91 -0.02 3.68 16 16 C -0.01 -0.70 4.95 84.86 0.42 -0.28 16 17 N -0.92 -54.30 13.97 21.65 0.30 -54.00 16 18 Si 0.88 42.29 26.01 68.60 1.78 44.07 16 19 H -0.31 -15.83 7.11 99.48 0.71 -15.13 16 20 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 21 H -0.24 -10.52 4.73 99.48 0.47 -10.05 16 22 C 0.13 5.17 4.51 86.56 0.39 5.56 16 23 C 0.06 2.03 5.05 86.56 0.44 2.47 16 24 C -0.09 -1.84 7.43 22.53 0.17 -1.68 16 25 C -0.12 -1.99 10.00 22.25 0.22 -1.76 16 26 C 0.10 1.73 7.31 22.57 0.17 1.90 16 27 F -0.13 -1.97 16.85 44.97 0.76 -1.21 16 28 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 29 H 0.09 0.86 8.12 -2.39 -0.02 0.84 16 30 H 0.12 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.43 3.44 8.52 -92.71 -0.79 2.65 16 32 H 0.13 4.53 5.95 -2.91 -0.02 4.52 16 33 H 0.08 2.60 8.14 -2.39 -0.02 2.59 16 34 H 0.09 3.14 7.00 -2.39 -0.02 3.13 16 35 H 0.08 3.03 7.85 -2.39 -0.02 3.01 16 36 H 0.03 1.01 8.14 -2.39 -0.02 1.00 16 37 H 0.26 14.79 8.31 -92.71 -0.77 14.01 16 38 H 0.03 1.20 7.14 -2.38 -0.02 1.18 16 39 H 0.07 2.83 4.08 -2.39 -0.01 2.82 16 40 H 0.09 2.69 8.13 -2.39 -0.02 2.67 16 41 H 0.13 3.36 3.56 -3.85 -0.01 3.34 16 42 H 0.18 3.15 5.31 -2.91 -0.02 3.13 16 43 H 0.18 1.74 8.06 -2.91 -0.02 1.72 16 Total: -1.00 -78.52 348.18 2.90 -75.63 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: 0.05 Total: 12.78 kcal Atomic # 6 Polarization: 23.41 SS G_CDS: 6.16 Total: 29.57 kcal Atomic # 7 Polarization: -113.31 SS G_CDS: -5.75 Total: -119.06 kcal Atomic # 8 Polarization: -41.67 SS G_CDS: -0.11 Total: -41.78 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.76 Total: -1.21 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 1.78 Total: 44.07 kcal Total: -78.52 2.90 -75.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265736515.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.374 kcal (2) G-P(sol) polarization free energy of solvation -78.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds