Wall clock time and date at job start Tue Mar 31 2020 18:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46498 * 109.47157 * 2 1 4 4 C 1.46499 * 120.00285 * 72.70286 * 3 2 1 5 5 C 1.50697 * 109.46992 * 90.00130 * 4 3 2 6 6 H 1.07992 * 120.00340 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99795 * 180.02562 * 5 4 3 8 8 N 1.31519 * 120.00214 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00050 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.46650 * 60.00477 * 9 7 5 11 11 H 1.48504 * 109.47053 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47044 * 299.99972 * 9 7 5 13 13 C 1.34784 * 120.00003 * 252.70163 * 3 2 1 14 14 O 1.21558 * 120.00272 * 181.60176 * 13 3 2 15 15 C 1.47709 * 119.99414 * 1.60485 * 13 3 2 16 16 C 1.39598 * 120.13675 * 26.50058 * 15 13 3 17 17 C 1.38479 * 119.80292 * 179.78786 * 16 15 13 18 18 N 1.40083 * 119.96182 * 180.20790 * 17 16 15 19 19 C 1.47053 * 125.41318 * 354.04417 * 18 17 16 20 20 C 1.54105 * 103.86596 * 179.87118 * 19 18 17 21 21 N 1.47053 * 103.86002 * 0.37230 * 20 19 18 22 22 C 1.33946 * 125.41074 * 174.34636 * 18 17 16 23 23 O 1.21593 * 123.04238 * 359.97438 * 22 18 17 24 24 C 1.39036 * 120.07514 * 0.49145 * 17 16 15 25 25 C 1.38119 * 120.27134 * 359.73987 * 24 17 16 26 26 C 1.38329 * 120.19250 * 0.02562 * 25 24 17 27 27 F 1.35104 * 120.03991 * 179.97438 * 26 25 24 28 28 H 1.09000 * 109.46890 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46743 * 300.00365 * 1 2 3 30 30 H 1.08990 * 109.46800 * 59.99920 * 1 2 3 31 31 H 1.08996 * 109.46970 * 239.99674 * 2 1 3 32 32 H 1.08999 * 109.47256 * 119.99666 * 2 1 3 33 33 H 1.08998 * 109.46945 * 210.00129 * 4 3 2 34 34 H 1.09000 * 109.46586 * 330.00062 * 4 3 2 35 35 H 0.96998 * 120.00486 * 180.02562 * 8 7 5 36 36 H 1.08000 * 120.09789 * 0.02562 * 16 15 13 37 37 H 1.09004 * 110.54796 * 298.59668 * 19 18 17 38 38 H 1.09000 * 110.54997 * 61.39813 * 19 18 17 39 39 H 1.09000 * 110.75332 * 241.67816 * 20 19 18 40 40 H 1.08998 * 110.46473 * 118.92852 * 20 19 18 41 41 H 0.97001 * 125.41142 * 179.76172 * 21 20 19 42 42 H 1.07999 * 119.86113 * 179.76241 * 24 17 16 43 43 H 1.07999 * 119.90502 * 179.97438 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.9069 2.1976 1.2113 5 6 3.1477 2.0253 2.0490 6 1 3.9398 1.3727 1.7131 7 6 3.2711 2.7002 3.2450 8 7 2.3063 3.4946 3.6545 9 14 4.8088 2.4862 4.2839 10 1 5.9968 2.9176 3.5043 11 1 4.6959 3.3138 5.5117 12 1 4.9564 1.0576 4.6612 13 6 2.5703 1.9009 -1.1145 14 8 3.0019 3.0372 -1.1060 15 6 2.6505 1.0895 -2.3462 16 6 1.7291 0.0654 -2.5720 17 6 1.8080 -0.6881 -3.7312 18 7 0.8825 -1.7137 -3.9632 19 6 -0.1379 -2.1728 -3.0090 20 6 -0.8711 -3.2978 -3.7650 21 7 -0.1800 -3.3594 -5.0616 22 6 0.7900 -2.4360 -5.0875 23 8 1.5202 -2.2682 -6.0452 24 6 2.8083 -0.4317 -4.6621 25 6 3.7245 0.5776 -4.4396 26 6 3.6531 1.3403 -3.2878 27 9 4.5512 2.3266 -3.0729 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.7984 3.2461 0.9340 34 1 1.0351 1.8810 1.7838 35 1 2.3932 3.9697 4.4957 36 1 0.9547 -0.1361 -1.8467 37 1 0.3310 -2.5596 -2.1042 38 1 -0.8276 -1.3639 -2.7677 39 1 -1.9230 -3.0482 -3.9036 40 1 -0.7703 -4.2434 -3.2324 41 1 -0.3928 -3.9714 -5.7834 42 1 2.8689 -1.0240 -5.5632 43 1 4.4993 0.7714 -5.1665 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267751086.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:11 Heat of formation + Delta-G solvation = -23.179196 kcal Electronic energy + Delta-G solvation = -29578.850310 eV Core-core repulsion = 25347.931145 eV Total energy + Delta-G solvation = -4230.919164 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.52116 -41.86326 -39.90270 -37.98585 -36.91958 -35.61699 -34.41232 -32.99653 -31.38780 -30.27596 -29.92168 -28.83642 -27.24209 -24.54774 -23.94442 -23.23387 -22.88960 -22.12986 -20.87243 -19.07471 -18.13116 -17.69934 -17.19301 -17.07378 -16.45439 -16.29702 -15.97268 -15.33272 -15.29588 -15.12003 -14.71055 -14.51444 -14.31175 -14.17920 -14.05114 -13.54437 -13.36773 -13.16558 -12.97645 -12.73221 -12.54765 -12.42459 -12.18539 -12.01927 -11.76617 -11.32122 -11.20783 -10.92568 -10.73306 -10.57262 -10.32851 -10.21650 -10.13828 -9.67392 -9.64816 -9.16433 -8.87532 -8.43033 -7.94847 -7.70612 -6.04659 -4.09105 0.87513 1.05281 1.98423 2.65088 3.25001 3.32723 3.33479 3.37281 3.41331 3.70523 3.81462 3.94169 4.33320 4.37816 4.40287 4.45810 4.71280 4.76840 4.88449 4.97955 5.09925 5.15029 5.17342 5.30029 5.35620 5.38179 5.44727 5.59142 5.71475 5.83918 6.04192 6.09979 6.13589 6.16171 6.35461 6.40219 6.60421 6.86171 6.99429 7.03884 7.40846 7.48607 7.91448 8.07804 8.21990 8.31663 8.86651 9.01871 9.55825 11.03452 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.015711 B = 0.003481 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.791176 B = 8041.380480 C = 9248.675732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.071 3.929 3 N -0.586 5.586 4 C 0.248 3.752 5 C -0.527 4.527 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.545 3.455 14 O -0.519 6.519 15 C -0.129 4.129 16 C -0.129 4.129 17 C 0.163 3.837 18 N -0.567 5.567 19 C 0.078 3.922 20 C 0.093 3.907 21 N -0.737 5.737 22 C 0.701 3.299 23 O -0.569 6.569 24 C -0.110 4.110 25 C -0.136 4.136 26 C 0.129 3.871 27 F -0.118 7.118 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.045 0.955 34 H 0.036 0.964 35 H 0.264 0.736 36 H 0.169 0.831 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.433 0.567 42 H 0.168 0.832 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.501 -17.261 -15.040 24.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.052 4.052 3 N -0.317 5.317 4 C 0.129 3.871 5 C -0.566 4.566 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.203 1.203 13 C 0.331 3.669 14 O -0.396 6.396 15 C -0.134 4.134 16 C -0.150 4.150 17 C 0.069 3.931 18 N -0.294 5.294 19 C -0.044 4.044 20 C -0.032 4.032 21 N -0.399 5.399 22 C 0.402 3.598 23 O -0.446 6.446 24 C -0.130 4.130 25 C -0.155 4.155 26 C 0.108 3.892 27 F -0.096 7.096 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.110 0.890 32 H 0.096 0.904 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.073 0.927 36 H 0.186 0.814 37 H 0.115 0.885 38 H 0.113 0.887 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.276 0.724 42 H 0.185 0.815 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -8.897 -16.334 -15.279 24.071 hybrid contribution 0.719 -0.288 0.624 0.994 sum -8.179 -16.621 -14.655 23.621 Atomic orbital electron populations 1.22294 0.96502 1.01654 1.03138 1.22284 0.93921 0.85082 1.03925 1.48109 1.57942 1.12862 1.12772 1.19306 0.97144 0.91266 0.79379 1.21387 1.03427 1.27500 1.04290 0.92457 1.24916 0.96614 0.94868 0.97576 1.69916 1.32520 1.28801 1.22184 0.86560 0.83504 0.77995 0.79400 1.20101 1.21170 1.20259 1.17864 0.79759 0.86626 0.82645 1.90812 1.46555 1.18255 1.83974 1.20137 0.97308 0.98794 0.97147 1.21738 1.01593 0.94858 0.96788 1.17245 0.90639 0.89764 0.95437 1.44399 1.34043 1.34727 1.16210 1.22713 0.90499 0.97494 0.93732 1.22417 0.97585 0.99304 0.83912 1.45068 1.36337 1.39466 1.19007 1.15797 0.81536 0.79823 0.82623 1.90864 1.46707 1.71609 1.35434 1.21576 0.92615 0.98096 1.00711 1.21012 1.01299 0.96451 0.96734 1.17708 0.88885 0.88219 0.94413 1.91585 1.64689 1.58662 1.94662 0.91819 0.90791 0.92593 0.88962 0.90354 0.93722 0.94643 0.92651 0.81391 0.88530 0.88692 0.89264 0.89245 0.72443 0.81530 0.83786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.06 9.11 37.16 0.34 -1.73 16 2 C 0.07 1.08 5.62 -4.04 -0.02 1.06 16 3 N -0.59 -12.35 2.51 -176.23 -0.44 -12.79 16 4 C 0.25 6.39 5.08 -5.20 -0.03 6.36 16 5 C -0.53 -14.97 9.39 -34.44 -0.32 -15.29 16 6 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 8 N -0.90 -26.44 13.29 55.43 0.74 -25.71 16 9 Si 0.90 21.98 29.54 -169.99 -5.02 16.95 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 C 0.55 12.07 7.43 -12.39 -0.09 11.98 16 14 O -0.52 -13.89 15.37 5.31 0.08 -13.81 16 15 C -0.13 -2.26 5.57 -104.93 -0.58 -2.85 16 16 C -0.13 -1.74 6.90 -38.99 -0.27 -2.01 16 17 C 0.16 2.04 6.61 -83.70 -0.55 1.48 16 18 N -0.57 -5.63 3.16 -118.26 -0.37 -6.01 16 19 C 0.08 0.43 6.48 -3.16 -0.02 0.41 16 20 C 0.09 0.30 8.06 -3.16 -0.03 0.27 16 21 N -0.74 -4.55 6.37 -64.70 -0.41 -4.96 16 22 C 0.70 7.47 8.52 -88.40 -0.75 6.72 16 23 O -0.57 -8.05 14.75 5.28 0.08 -7.97 16 24 C -0.11 -1.45 9.28 -39.33 -0.37 -1.81 16 25 C -0.14 -1.85 10.01 -39.59 -0.40 -2.25 16 26 C 0.13 2.21 7.24 -38.96 -0.28 1.93 16 27 F -0.12 -2.33 15.89 2.25 0.04 -2.29 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 1.01 7.28 -51.93 -0.38 0.63 16 30 H 0.06 0.61 7.10 -51.93 -0.37 0.25 16 31 H 0.09 1.22 3.86 -53.35 -0.21 1.01 16 32 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.04 1.31 7.44 -51.93 -0.39 0.92 16 34 H 0.04 0.90 7.17 -51.93 -0.37 0.53 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.17 1.94 2.04 -52.49 -0.11 1.83 16 37 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.09 0.42 8.11 -51.93 -0.42 0.00 16 39 H 0.09 0.13 8.14 -51.93 -0.42 -0.30 16 40 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 41 H 0.43 1.84 8.96 -40.82 -0.37 1.48 16 42 H 0.17 2.25 5.26 -52.49 -0.28 1.97 16 43 H 0.14 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 355.07 15.07 5.35 5.35 Total: -1.00 -37.60 355.07 -8.40 -46.00 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -4.96 Total: -0.73 kcal Atomic # 6 Polarization: 9.44 SS G_CDS: -3.47 Total: 5.96 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: -0.49 Total: -49.46 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: 0.16 Total: -21.78 kcal Atomic # 9 Polarization: -2.33 SS G_CDS: 0.04 Total: -2.29 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -37.60 -8.40 -46.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267751086.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.825 kcal (2) G-P(sol) polarization free energy of solvation -37.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds