Wall clock time and date at job start Tue Mar 31 2020 18:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46498 * 109.47157 * 2 1 4 4 C 1.46499 * 120.00285 * 72.70286 * 3 2 1 5 5 C 1.50697 * 109.46992 * 90.00130 * 4 3 2 6 6 H 1.07992 * 120.00340 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99795 * 180.02562 * 5 4 3 8 8 N 1.31519 * 120.00214 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00050 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.46650 * 60.00477 * 9 7 5 11 11 H 1.48504 * 109.47053 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47044 * 299.99972 * 9 7 5 13 13 C 1.34784 * 120.00003 * 252.70163 * 3 2 1 14 14 O 1.21558 * 120.00272 * 181.60176 * 13 3 2 15 15 C 1.47709 * 119.99414 * 1.60485 * 13 3 2 16 16 C 1.39598 * 120.13675 * 26.50058 * 15 13 3 17 17 C 1.38479 * 119.80292 * 179.78786 * 16 15 13 18 18 N 1.40083 * 119.96182 * 180.20790 * 17 16 15 19 19 C 1.47053 * 125.41318 * 354.04417 * 18 17 16 20 20 C 1.54105 * 103.86596 * 179.87118 * 19 18 17 21 21 N 1.47053 * 103.86002 * 0.37230 * 20 19 18 22 22 C 1.33946 * 125.41074 * 174.34636 * 18 17 16 23 23 O 1.21593 * 123.04238 * 359.97438 * 22 18 17 24 24 C 1.39036 * 120.07514 * 0.49145 * 17 16 15 25 25 C 1.38119 * 120.27134 * 359.73987 * 24 17 16 26 26 C 1.38329 * 120.19250 * 0.02562 * 25 24 17 27 27 F 1.35104 * 120.03991 * 179.97438 * 26 25 24 28 28 H 1.09000 * 109.46890 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46743 * 300.00365 * 1 2 3 30 30 H 1.08990 * 109.46800 * 59.99920 * 1 2 3 31 31 H 1.08996 * 109.46970 * 239.99674 * 2 1 3 32 32 H 1.08999 * 109.47256 * 119.99666 * 2 1 3 33 33 H 1.08998 * 109.46945 * 210.00129 * 4 3 2 34 34 H 1.09000 * 109.46586 * 330.00062 * 4 3 2 35 35 H 0.96998 * 120.00486 * 180.02562 * 8 7 5 36 36 H 1.08000 * 120.09789 * 0.02562 * 16 15 13 37 37 H 1.09004 * 110.54796 * 298.59668 * 19 18 17 38 38 H 1.09000 * 110.54997 * 61.39813 * 19 18 17 39 39 H 1.09000 * 110.75332 * 241.67816 * 20 19 18 40 40 H 1.08998 * 110.46473 * 118.92852 * 20 19 18 41 41 H 0.97001 * 125.41142 * 179.76172 * 21 20 19 42 42 H 1.07999 * 119.86113 * 179.76241 * 24 17 16 43 43 H 1.07999 * 119.90502 * 179.97438 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.9069 2.1976 1.2113 5 6 3.1477 2.0253 2.0490 6 1 3.9398 1.3727 1.7131 7 6 3.2711 2.7002 3.2450 8 7 2.3063 3.4946 3.6545 9 14 4.8088 2.4862 4.2839 10 1 5.9968 2.9176 3.5043 11 1 4.6959 3.3138 5.5117 12 1 4.9564 1.0576 4.6612 13 6 2.5703 1.9009 -1.1145 14 8 3.0019 3.0372 -1.1060 15 6 2.6505 1.0895 -2.3462 16 6 1.7291 0.0654 -2.5720 17 6 1.8080 -0.6881 -3.7312 18 7 0.8825 -1.7137 -3.9632 19 6 -0.1379 -2.1728 -3.0090 20 6 -0.8711 -3.2978 -3.7650 21 7 -0.1800 -3.3594 -5.0616 22 6 0.7900 -2.4360 -5.0875 23 8 1.5202 -2.2682 -6.0452 24 6 2.8083 -0.4317 -4.6621 25 6 3.7245 0.5776 -4.4396 26 6 3.6531 1.3403 -3.2878 27 9 4.5512 2.3266 -3.0729 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.7984 3.2461 0.9340 34 1 1.0351 1.8810 1.7838 35 1 2.3932 3.9697 4.4957 36 1 0.9547 -0.1361 -1.8467 37 1 0.3310 -2.5596 -2.1042 38 1 -0.8276 -1.3639 -2.7677 39 1 -1.9230 -3.0482 -3.9036 40 1 -0.7703 -4.2434 -3.2324 41 1 -0.3928 -3.9714 -5.7834 42 1 2.8689 -1.0240 -5.5632 43 1 4.4993 0.7714 -5.1665 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267751086.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:10 Heat of formation + Delta-G solvation = -50.453408 kcal Electronic energy + Delta-G solvation = -29580.033008 eV Core-core repulsion = 25347.931145 eV Total energy + Delta-G solvation = -4232.101863 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.91179 -42.61359 -41.29882 -39.30633 -37.68899 -37.24148 -35.24301 -35.00297 -32.85111 -31.59901 -30.68402 -29.64575 -29.10713 -25.89393 -25.11623 -24.47397 -24.05484 -23.06433 -22.02751 -20.35089 -18.99770 -18.84197 -18.65651 -18.31613 -17.70498 -17.61079 -17.27310 -16.73731 -16.69530 -16.16924 -16.09051 -15.86455 -15.59197 -15.19477 -14.85493 -14.76941 -14.42733 -14.38404 -14.14736 -14.07879 -13.77926 -13.46147 -13.28764 -13.15597 -13.04637 -13.00808 -12.72500 -12.58073 -12.34713 -12.18990 -11.88579 -11.73032 -11.26940 -11.23094 -10.75719 -10.64259 -10.21350 -10.13263 -9.53054 -8.89540 -8.23452 -6.37562 -0.37736 -0.05234 1.27310 1.35276 1.40347 1.47068 1.66119 1.98165 2.18751 2.39868 2.58440 2.86892 3.06256 3.15071 3.31120 3.47812 3.58460 3.81913 3.97268 4.04233 4.16900 4.20336 4.31289 4.38979 4.54938 4.59522 4.67496 4.79439 4.83204 4.94129 4.95474 4.96333 5.05288 5.06698 5.16693 5.21063 5.32860 5.43277 5.54945 5.79000 5.82338 6.05124 6.11989 6.32483 6.61391 6.70824 7.21218 7.36825 7.37533 8.83486 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.015711 B = 0.003481 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.791176 B = 8041.380480 C = 9248.675732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.061 3.939 3 N -0.587 5.587 4 C 0.264 3.736 5 C -0.547 4.547 6 H 0.049 0.951 7 C 0.012 3.988 8 N -0.925 5.925 9 Si 0.964 3.036 10 H -0.283 1.283 11 H -0.275 1.275 12 H -0.258 1.258 13 C 0.536 3.464 14 O -0.584 6.584 15 C -0.146 4.146 16 C -0.116 4.116 17 C 0.181 3.819 18 N -0.569 5.569 19 C 0.061 3.939 20 C 0.095 3.905 21 N -0.722 5.722 22 C 0.690 3.310 23 O -0.612 6.612 24 C -0.108 4.108 25 C -0.118 4.118 26 C 0.096 3.904 27 F -0.143 7.143 28 H 0.119 0.881 29 H 0.049 0.951 30 H 0.064 0.936 31 H 0.119 0.881 32 H 0.073 0.927 33 H -0.004 1.004 34 H 0.038 0.962 35 H 0.268 0.732 36 H 0.191 0.809 37 H 0.116 0.884 38 H 0.111 0.889 39 H 0.115 0.885 40 H 0.117 0.883 41 H 0.442 0.558 42 H 0.171 0.829 43 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.169 -21.071 -15.390 28.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.060 4.060 3 N -0.317 5.317 4 C 0.143 3.857 5 C -0.586 4.586 6 H 0.067 0.933 7 C -0.187 4.187 8 N -0.564 5.564 9 Si 0.788 3.212 10 H -0.209 1.209 11 H -0.200 1.200 12 H -0.182 1.182 13 C 0.324 3.676 14 O -0.465 6.465 15 C -0.150 4.150 16 C -0.136 4.136 17 C 0.085 3.915 18 N -0.295 5.295 19 C -0.060 4.060 20 C -0.028 4.028 21 N -0.384 5.384 22 C 0.391 3.609 23 O -0.492 6.492 24 C -0.128 4.128 25 C -0.137 4.137 26 C 0.074 3.926 27 F -0.122 7.122 28 H 0.137 0.863 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.136 0.864 32 H 0.091 0.909 33 H 0.015 0.985 34 H 0.056 0.944 35 H 0.077 0.923 36 H 0.207 0.793 37 H 0.134 0.866 38 H 0.129 0.871 39 H 0.133 0.867 40 H 0.135 0.865 41 H 0.286 0.714 42 H 0.188 0.812 43 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -10.655 -20.255 -15.616 27.706 hybrid contribution 1.122 0.776 0.644 1.509 sum -9.533 -19.479 -14.972 26.353 Atomic orbital electron populations 1.22284 0.93200 1.05042 1.02444 1.22738 0.96629 0.81649 1.04963 1.48123 1.57712 1.14780 1.11086 1.18773 0.96412 0.89646 0.80873 1.21657 1.04091 1.27739 1.05067 0.93320 1.25789 0.99793 0.94347 0.98811 1.70024 1.34342 1.29352 1.22725 0.85530 0.78933 0.79047 0.77684 1.20875 1.20030 1.18220 1.18593 0.78511 0.86367 0.84109 1.90757 1.49335 1.21146 1.85303 1.19812 0.99525 1.00197 0.95509 1.21690 1.00841 0.93515 0.97594 1.17214 0.90422 0.89587 0.94260 1.44488 1.34097 1.33694 1.17264 1.23250 0.89975 0.98908 0.93903 1.22734 0.98180 0.99849 0.82045 1.45082 1.34926 1.37915 1.20467 1.16108 0.82076 0.80537 0.82196 1.90829 1.48541 1.72915 1.36959 1.21738 0.92550 0.97611 1.00934 1.21184 1.01647 0.95314 0.95562 1.18084 0.89384 0.89091 0.95998 1.91513 1.65669 1.60003 1.94994 0.86271 0.93161 0.91690 0.86408 0.90854 0.98548 0.94436 0.92301 0.79278 0.86555 0.87105 0.86697 0.86478 0.71352 0.81203 0.81433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.49 9.11 71.98 0.66 -2.83 16 2 C 0.06 1.77 5.62 86.38 0.49 2.26 16 3 N -0.59 -25.59 2.51 -829.73 -2.08 -27.67 16 4 C 0.26 14.32 5.08 85.63 0.43 14.75 16 5 C -0.55 -32.19 9.39 25.60 0.24 -31.95 16 6 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 7 C 0.01 0.70 5.46 84.65 0.46 1.16 16 8 N -0.92 -56.01 13.29 21.45 0.28 -55.73 16 9 Si 0.96 45.61 29.54 68.60 2.03 47.64 16 10 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 11 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 12 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 13 C 0.54 24.96 7.43 86.75 0.64 25.60 16 14 O -0.58 -33.73 15.37 -3.90 -0.06 -33.79 16 15 C -0.15 -5.20 5.57 -20.06 -0.11 -5.32 16 16 C -0.12 -2.90 6.90 22.66 0.16 -2.75 16 17 C 0.18 4.08 6.61 38.07 0.25 4.33 16 18 N -0.57 -9.28 3.16 -646.79 -2.04 -11.32 16 19 C 0.06 0.34 6.48 86.65 0.56 0.91 16 20 C 0.10 0.08 8.06 86.65 0.70 0.78 16 21 N -0.72 -6.04 6.37 -477.33 -3.04 -9.08 16 22 C 0.69 12.64 8.52 179.57 1.53 14.17 16 23 O -0.61 -16.24 14.75 -4.01 -0.06 -16.30 16 24 C -0.11 -2.67 9.28 22.43 0.21 -2.46 16 25 C -0.12 -3.15 10.01 22.26 0.22 -2.93 16 26 C 0.10 3.39 7.24 22.67 0.16 3.55 16 27 F -0.14 -6.05 15.89 44.97 0.71 -5.33 16 28 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.05 1.30 7.28 -2.38 -0.02 1.28 16 30 H 0.06 1.22 7.10 -2.39 -0.02 1.20 16 31 H 0.12 2.81 3.86 -3.72 -0.01 2.80 16 32 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.00 -0.23 7.44 -2.39 -0.02 -0.25 16 34 H 0.04 1.99 7.17 -2.39 -0.02 1.98 16 35 H 0.27 15.23 8.31 -92.71 -0.77 14.45 16 36 H 0.19 3.78 2.04 -2.91 -0.01 3.77 16 37 H 0.12 0.25 8.14 -2.39 -0.02 0.23 16 38 H 0.11 0.33 8.11 -2.39 -0.02 0.32 16 39 H 0.11 -0.38 8.14 -2.39 -0.02 -0.40 16 40 H 0.12 -0.43 8.14 -2.39 -0.02 -0.45 16 41 H 0.44 2.18 8.96 -92.71 -0.83 1.35 16 42 H 0.17 4.31 5.26 -2.91 -0.02 4.29 16 43 H 0.17 3.56 8.06 -2.91 -0.02 3.54 16 Total: -1.00 -89.98 355.07 2.60 -87.39 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: 0.25 Total: 4.90 kcal Atomic # 6 Polarization: 12.68 SS G_CDS: 6.61 Total: 19.29 kcal Atomic # 7 Polarization: -96.91 SS G_CDS: -6.88 Total: -103.80 kcal Atomic # 8 Polarization: -49.97 SS G_CDS: -0.12 Total: -50.09 kcal Atomic # 9 Polarization: -6.05 SS G_CDS: 0.71 Total: -5.33 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -89.98 2.60 -87.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267751086.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.933 kcal (2) G-P(sol) polarization free energy of solvation -89.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds