Wall clock time and date at job start Tue Mar 31 2020 18:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34736 * 126.50451 * 2 1 4 4 N 1.30873 * 109.70904 * 179.97438 * 3 2 1 5 5 C 1.33541 * 109.80847 * 359.97438 * 4 3 2 6 6 C 1.38053 * 126.50469 * 179.97438 * 2 1 3 7 7 C 1.41147 * 134.59365 * 0.06234 * 6 2 1 8 8 O 1.21797 * 120.38983 * 359.95160 * 7 6 2 9 9 N 1.34938 * 119.22947 * 179.97438 * 7 6 2 10 10 C 1.46491 * 119.50971 * 179.97438 * 9 7 6 11 11 C 1.50702 * 109.46957 * 89.99898 * 10 9 7 12 12 O 1.21283 * 120.00262 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99928 * 179.72354 * 11 10 9 14 14 C 1.46499 * 120.00199 * 180.27479 * 13 11 10 15 15 C 1.52997 * 109.47555 * 180.02562 * 14 13 11 16 16 C 1.50694 * 109.47460 * 180.02562 * 15 14 13 17 17 H 1.08002 * 120.00179 * 359.97438 * 16 15 14 18 18 C 1.37879 * 120.00472 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99350 * 359.97438 * 18 16 15 20 20 Si 1.86789 * 120.00458 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47675 * 89.99681 * 20 18 16 22 22 H 1.48501 * 109.47162 * 209.99853 * 20 18 16 23 23 H 1.48503 * 109.47180 * 329.99546 * 20 18 16 24 24 C 1.34417 * 120.98787 * 0.25673 * 9 7 6 25 25 O 1.21596 * 119.16937 * 179.72121 * 24 9 7 26 26 N 1.34649 * 121.66142 * 359.47626 * 24 9 7 27 27 C 1.46506 * 119.94641 * 180.28839 * 26 24 9 28 28 H 1.08994 * 109.47158 * 270.04217 * 1 2 3 29 29 H 1.08997 * 109.46777 * 30.04558 * 1 2 3 30 30 H 1.09005 * 109.46723 * 150.04212 * 1 2 3 31 31 H 1.07994 * 125.14459 * 359.92512 * 3 2 1 32 32 H 1.09004 * 109.47166 * 330.00164 * 10 9 7 33 33 H 1.08994 * 109.47507 * 209.99871 * 10 9 7 34 34 H 0.97000 * 120.00317 * 0.28382 * 13 11 10 35 35 H 1.08998 * 109.47134 * 300.00670 * 14 13 11 36 36 H 1.09002 * 109.46857 * 59.99862 * 14 13 11 37 37 H 1.08998 * 109.47382 * 300.00439 * 15 14 13 38 38 H 1.09005 * 109.46800 * 60.00640 * 15 14 13 39 39 H 0.97005 * 119.99661 * 179.97438 * 19 18 16 40 40 H 1.08993 * 109.46914 * 270.23261 * 27 26 24 41 41 H 1.09000 * 109.47136 * 30.23173 * 27 26 24 42 42 H 1.08997 * 109.46688 * 150.22647 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2665 1.0830 0.0000 4 7 3.5194 0.7049 0.0006 5 6 3.5896 -0.6287 0.0015 6 6 2.2863 -1.1097 0.0005 7 6 2.0678 -2.5041 0.0000 8 8 0.9345 -2.9503 -0.0002 9 7 3.1293 -3.3373 0.0003 10 6 2.9097 -4.7857 0.0003 11 6 2.8346 -5.2824 -1.4205 12 8 2.9533 -4.5034 -2.3424 13 7 2.6415 -6.5934 -1.6667 14 6 2.5745 -7.0772 -3.0479 15 6 2.3501 -8.5906 -3.0479 16 6 2.2818 -9.0884 -4.4686 17 1 2.3875 -8.3946 -5.2895 18 6 2.0834 -10.4294 -4.7206 19 7 1.9543 -11.2741 -3.7209 20 14 1.9995 -11.0465 -6.4816 21 1 3.3621 -11.4160 -6.9422 22 1 1.1148 -12.2374 -6.5472 23 1 1.4548 -9.9766 -7.3556 24 6 4.3851 -2.8583 0.0061 25 8 5.3173 -3.6390 0.0113 26 7 4.6370 -1.5355 0.0014 27 6 6.0209 -1.0546 0.0017 28 1 -0.3633 0.0008 1.0276 29 1 -0.3633 0.8896 -0.5145 30 1 -0.3633 -0.8904 -0.5132 31 1 1.9265 2.1080 -0.0012 32 1 1.9752 -5.0115 0.5140 33 1 3.7350 -5.2783 0.5143 34 1 2.5468 -7.2166 -0.9294 35 1 1.7490 -6.5878 -3.5646 36 1 3.5098 -6.8482 -3.5588 37 1 3.1754 -9.0804 -2.5310 38 1 1.4146 -8.8192 -2.5371 39 1 1.8143 -12.2175 -3.8981 40 1 6.3639 -0.9354 1.0294 41 1 6.6564 -1.7760 -0.5120 42 1 6.0720 -0.0947 -0.5122 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273011319.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:46 Heat of formation + Delta-G solvation = -7.871224 kcal Electronic energy + Delta-G solvation = -28850.663965 eV Core-core repulsion = 24640.328565 eV Total energy + Delta-G solvation = -4210.335399 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.36095 -41.47707 -39.44246 -38.85419 -36.64188 -35.48068 -34.77975 -34.19424 -32.86296 -31.26927 -29.92228 -28.26443 -27.67048 -27.07636 -24.86900 -24.05684 -23.48310 -21.58903 -21.05995 -20.37771 -19.79118 -18.69618 -17.83438 -17.48325 -16.74649 -16.48364 -16.25401 -15.97591 -15.77342 -15.68254 -15.06727 -14.90317 -14.80497 -14.54890 -14.34176 -14.10501 -13.76100 -13.36992 -13.27843 -13.22375 -13.12472 -12.59629 -12.29007 -12.05233 -11.38620 -11.19814 -11.09023 -11.02071 -10.81289 -10.63612 -10.51294 -10.41483 -10.32311 -10.08211 -9.75262 -9.40940 -9.14375 -8.55849 -8.45711 -8.35583 -6.08005 -4.10655 0.57414 1.34333 1.78979 2.15192 2.23135 2.55782 2.91124 3.17044 3.30781 3.36684 3.40902 3.65051 3.70947 4.09440 4.14048 4.32214 4.43117 4.69367 4.84026 4.92010 4.97167 5.02859 5.11829 5.14836 5.15687 5.24522 5.29113 5.42667 5.46321 5.71938 6.11421 6.33299 6.35998 6.41816 6.74326 6.87659 6.92648 7.17045 7.24541 7.52407 7.63359 7.69424 7.89773 7.95348 8.28377 8.56901 8.95080 9.53987 11.03648 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.019915 B = 0.002430 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.606634 B =11520.584358 C =12143.311017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.412 5.412 3 C 0.261 3.739 4 N -0.501 5.501 5 C 0.318 3.682 6 C -0.148 4.148 7 C 0.601 3.399 8 O -0.510 6.510 9 N -0.531 5.531 10 C 0.094 3.906 11 C 0.499 3.501 12 O -0.542 6.542 13 N -0.715 5.715 14 C 0.123 3.877 15 C 0.013 3.987 16 C -0.521 4.521 17 H 0.059 0.941 18 C 0.059 3.941 19 N -0.894 5.894 20 Si 0.897 3.103 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.273 1.273 24 C 0.715 3.285 25 O -0.529 6.529 26 N -0.511 5.511 27 C 0.091 3.909 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.102 0.898 31 H 0.230 0.770 32 H 0.130 0.870 33 H 0.132 0.868 34 H 0.400 0.600 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.024 0.976 38 H 0.023 0.977 39 H 0.262 0.738 40 H 0.071 0.929 41 H 0.093 0.907 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.060 26.896 14.362 30.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.093 5.093 3 C -0.022 4.022 4 N -0.225 5.225 5 C 0.087 3.913 6 C -0.265 4.265 7 C 0.395 3.605 8 O -0.386 6.386 9 N -0.274 5.274 10 C -0.031 4.031 11 C 0.282 3.718 12 O -0.420 6.420 13 N -0.365 5.365 14 C 0.001 3.999 15 C -0.025 4.025 16 C -0.560 4.560 17 H 0.077 0.923 18 C -0.143 4.143 19 N -0.533 5.533 20 Si 0.725 3.275 21 H -0.205 1.205 22 H -0.212 1.212 23 H -0.198 1.198 24 C 0.417 3.583 25 O -0.400 6.400 26 N -0.239 5.239 27 C -0.050 4.050 28 H 0.105 0.895 29 H 0.115 0.885 30 H 0.120 0.880 31 H 0.246 0.754 32 H 0.148 0.852 33 H 0.150 0.850 34 H 0.234 0.766 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.042 0.958 38 H 0.042 0.958 39 H 0.072 0.928 40 H 0.090 0.910 41 H 0.112 0.888 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.558 26.996 13.712 30.284 hybrid contribution -0.837 -1.079 -0.639 1.508 sum -0.279 25.917 13.073 29.029 Atomic orbital electron populations 1.22340 0.74085 1.06077 1.04725 1.44668 1.08366 1.04414 1.51896 1.25277 0.83593 0.93836 0.99459 1.69638 1.19676 1.08271 1.24882 1.18088 0.85216 0.89192 0.98834 1.18751 0.90623 0.89972 1.27177 1.15351 0.84613 0.84345 0.76183 1.90881 1.20912 1.78535 1.48238 1.45335 1.05547 1.08841 1.67673 1.21626 1.06866 0.77019 0.97598 1.20497 0.77328 0.83415 0.90563 1.90693 1.50144 1.55385 1.45783 1.46193 1.72068 1.07135 1.11136 1.21753 1.00806 0.98085 0.79232 1.19330 0.97718 0.87211 0.98220 1.21046 1.50056 0.93067 0.91845 0.92286 1.24993 0.95031 0.96861 0.97404 1.69956 1.49334 1.03215 1.30776 0.86507 0.78021 0.78375 0.84625 1.20542 1.21158 1.19757 1.15354 0.83276 0.81446 0.78213 1.91039 1.41432 1.53381 1.54189 1.43816 1.07188 1.02322 1.70528 1.21957 0.77935 1.01447 1.03638 0.89504 0.88489 0.87976 0.75433 0.85219 0.85032 0.76637 0.92533 0.92461 0.95793 0.95825 0.92841 0.91007 0.88816 0.89106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.34 10.97 59.85 0.66 1.00 16 2 N -0.41 -3.43 3.18 -123.14 -0.39 -3.82 16 3 C 0.26 1.67 12.50 -90.34 -1.13 0.54 16 4 N -0.50 -4.92 11.16 -13.39 -0.15 -5.07 16 5 C 0.32 3.84 7.64 -154.56 -1.18 2.66 16 6 C -0.15 -1.84 6.90 -83.70 -0.58 -2.42 16 7 C 0.60 8.89 7.43 -15.08 -0.11 8.78 16 8 O -0.51 -8.23 15.56 5.10 0.08 -8.15 16 9 N -0.53 -7.94 2.05 -125.46 -0.26 -8.20 16 10 C 0.09 1.31 5.55 -5.20 -0.03 1.28 16 11 C 0.50 9.12 7.89 -10.98 -0.09 9.03 16 12 O -0.54 -12.11 16.43 5.55 0.09 -12.02 16 13 N -0.71 -12.95 5.56 -60.29 -0.33 -13.29 16 14 C 0.12 2.72 5.61 -4.04 -0.02 2.70 16 15 C 0.01 0.32 5.09 -27.89 -0.14 0.18 16 16 C -0.52 -14.71 9.11 -34.44 -0.31 -15.02 16 17 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 18 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 20 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 23 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 24 C 0.71 10.68 8.11 -87.35 -0.71 9.97 16 25 O -0.53 -8.77 15.26 5.28 0.08 -8.69 16 26 N -0.51 -6.45 3.06 -128.31 -0.39 -6.84 16 27 C 0.09 0.84 10.39 59.85 0.62 1.46 16 28 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.10 0.14 8.14 -51.93 -0.42 -0.28 16 30 H 0.10 0.77 7.27 -51.93 -0.38 0.39 16 31 H 0.23 0.19 8.06 -52.49 -0.42 -0.24 16 32 H 0.13 1.51 7.40 -51.93 -0.38 1.13 16 33 H 0.13 1.55 7.33 -51.93 -0.38 1.17 16 34 H 0.40 6.04 8.47 -40.82 -0.35 5.69 16 35 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.09 0.90 7.39 -51.93 -0.38 0.52 16 42 H 0.09 0.71 8.01 -51.93 -0.42 0.30 16 LS Contribution 366.01 15.07 5.52 5.52 Total: -1.00 -39.16 366.01 -8.37 -47.53 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -5.21 Total: 0.26 kcal Atomic # 6 Polarization: 24.86 SS G_CDS: -3.12 Total: 21.74 kcal Atomic # 7 Polarization: -62.06 SS G_CDS: -0.79 Total: -62.85 kcal Atomic # 8 Polarization: -29.10 SS G_CDS: 0.25 Total: -28.85 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -39.16 -8.37 -47.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273011319.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.659 kcal (2) G-P(sol) polarization free energy of solvation -39.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds