Wall clock time and date at job start Tue Mar 31 2020 18:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47075 * 2 1 4 4 C 1.50698 * 109.46818 * 119.99983 * 2 1 3 5 5 H 1.08006 * 120.00015 * 120.00083 * 4 2 1 6 6 C 1.37881 * 119.99990 * 300.27488 * 4 2 1 7 7 N 1.31506 * 120.00041 * 359.72934 * 6 4 2 8 8 Si 1.86803 * 119.99654 * 179.72609 * 6 4 2 9 9 H 1.48497 * 109.47494 * 359.97438 * 8 6 4 10 10 H 1.48506 * 109.46985 * 120.00387 * 8 6 4 11 11 H 1.48497 * 109.46993 * 239.99990 * 8 6 4 12 12 N 1.46499 * 109.47353 * 239.99874 * 2 1 3 13 13 C 1.34781 * 119.99707 * 85.00068 * 12 2 1 14 14 O 1.21584 * 119.99996 * 0.02562 * 13 12 2 15 15 N 1.34779 * 119.99352 * 180.02562 * 13 12 2 16 16 C 1.40105 * 119.99153 * 175.38662 * 15 13 12 17 17 C 1.38871 * 119.98769 * 214.82355 * 16 15 13 18 18 C 1.38083 * 120.04004 * 179.76936 * 17 16 15 19 19 C 1.38804 * 120.02544 * 0.50981 * 18 17 16 20 20 N 1.40210 * 120.01280 * 179.72427 * 19 18 17 21 21 C 1.46763 * 124.34893 * 269.74639 * 20 19 18 22 22 C 1.54651 * 105.38258 * 162.85131 * 21 20 19 23 23 C 1.54637 * 101.68464 * 25.76812 * 22 21 20 24 24 C 1.34414 * 124.34991 * 90.04337 * 20 19 18 25 25 O 1.21306 * 124.94369 * 0.38642 * 24 20 19 26 26 C 1.39051 * 119.97752 * 359.74186 * 19 18 17 27 27 F 1.35100 * 120.01826 * 179.97438 * 26 19 18 28 28 C 1.38243 * 119.96305 * 0.02562 * 26 19 18 29 29 H 1.08998 * 109.47140 * 300.00107 * 1 2 3 30 30 H 1.09005 * 109.47154 * 60.00148 * 1 2 3 31 31 H 1.08998 * 109.47075 * 180.02562 * 1 2 3 32 32 H 0.97000 * 119.99927 * 180.02562 * 7 6 4 33 33 H 0.96995 * 119.99977 * 265.00091 * 12 2 1 34 34 H 0.96992 * 120.00243 * 355.38870 * 15 13 12 35 35 H 1.07995 * 119.98037 * 359.97438 * 17 16 15 36 36 H 1.07998 * 119.99125 * 180.23144 * 18 17 16 37 37 H 1.09005 * 110.24272 * 281.98523 * 21 20 19 38 38 H 1.09002 * 110.24305 * 43.97651 * 21 20 19 39 39 H 1.09000 * 111.19605 * 267.59758 * 22 21 20 40 40 H 1.08998 * 110.81981 * 143.77245 * 22 21 20 41 41 H 1.09003 * 110.48564 * 216.30745 * 23 22 21 42 42 H 1.08998 * 110.48559 * 93.66125 * 23 22 21 43 43 H 1.07995 * 120.01288 * 180.02562 * 28 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6944 -0.2426 2.4827 7 7 0.9383 0.8265 2.6034 8 14 2.3108 -1.1278 4.0079 9 1 3.1363 -2.2941 3.6038 10 1 3.1330 -0.1970 4.8221 11 1 1.1524 -1.5962 4.8104 12 7 2.0184 -0.6906 -1.1961 13 6 2.1471 -0.0182 -2.3571 14 8 1.8584 1.1616 -2.4116 15 7 2.5959 -0.6538 -3.4576 16 6 2.6384 0.0184 -4.6862 17 6 2.3832 -0.6716 -5.8640 18 6 2.4201 -0.0092 -7.0751 19 6 2.7227 1.3448 -7.1172 20 7 2.7657 2.0158 -8.3475 21 6 3.9698 2.1504 -9.1757 22 6 3.4595 2.5505 -10.5797 23 6 2.1147 3.2347 -10.2408 24 6 1.7108 2.6235 -8.9173 25 8 0.5968 2.6741 -8.4399 26 6 2.9835 2.0354 -5.9388 27 9 3.2786 3.3532 -5.9789 28 6 2.9417 1.3726 -4.7264 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.7010 1.1558 3.4844 33 1 2.2491 -1.6317 -1.1525 34 1 2.8895 -1.5764 -3.3991 35 1 2.1526 -1.7262 -5.8326 36 1 2.2178 -0.5458 -7.9902 37 1 4.6203 2.9265 -8.7723 38 1 4.5014 1.2001 -9.2255 39 1 3.3034 1.6730 -11.2072 40 1 4.1448 3.2518 -11.0557 41 1 1.3707 3.0135 -11.0061 42 1 2.2497 4.3114 -10.1384 43 1 3.1437 1.9083 -3.8106 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274750501.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:22 Heat of formation + Delta-G solvation = -70.749707 kcal Electronic energy + Delta-G solvation = -28230.549174 eV Core-core repulsion = 23997.567197 eV Total energy + Delta-G solvation = -4232.981977 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.86199 -40.92539 -40.14978 -38.30717 -36.63839 -35.25038 -34.39319 -32.79740 -32.15348 -30.70502 -29.23522 -27.91909 -27.75372 -25.28831 -23.66135 -22.97298 -22.20049 -21.41344 -20.05691 -19.95658 -18.45421 -18.10566 -17.63426 -17.04149 -16.30659 -16.07715 -15.71599 -15.53606 -15.24706 -15.02324 -14.75922 -14.58804 -14.11365 -14.03684 -13.84123 -13.65964 -13.39889 -13.17814 -13.10296 -12.63437 -12.43716 -12.23762 -11.91139 -11.83833 -11.74361 -11.41887 -11.12941 -11.03715 -10.79998 -10.40175 -10.27365 -10.26824 -9.94654 -9.55731 -9.17229 -9.08165 -8.84307 -8.61114 -8.25862 -7.88298 -6.16084 -4.25719 0.94297 1.15344 2.34194 2.64289 2.97244 3.21459 3.29558 3.31738 3.31909 3.80238 4.03615 4.13107 4.17755 4.29603 4.41086 4.65957 4.68366 4.84697 4.96906 5.07488 5.12522 5.16595 5.23869 5.28125 5.38963 5.45630 5.56504 5.58398 5.86056 6.07936 6.17019 6.36378 6.55703 6.74819 6.78480 6.94295 6.98901 7.04582 7.15629 7.38430 7.57874 7.76723 7.92862 7.96850 8.11306 8.65112 8.77386 9.12556 9.42147 10.89947 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.030797 B = 0.002187 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.973330 B =12798.019315 C =12969.557256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.279 3.721 3 H 0.050 0.950 4 C -0.534 4.534 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.283 1.283 12 N -0.715 5.715 13 C 0.691 3.309 14 O -0.577 6.577 15 N -0.694 5.694 16 C 0.220 3.780 17 C -0.158 4.158 18 C -0.061 4.061 19 C 0.074 3.926 20 N -0.574 5.574 21 C 0.103 3.897 22 C -0.130 4.130 23 C -0.152 4.152 24 C 0.517 3.483 25 O -0.517 6.517 26 C 0.130 3.870 27 F -0.132 7.132 28 C -0.153 4.153 29 H 0.091 0.909 30 H 0.016 0.984 31 H 0.026 0.974 32 H 0.265 0.735 33 H 0.387 0.613 34 H 0.407 0.593 35 H 0.137 0.863 36 H 0.135 0.865 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.104 0.896 42 H 0.107 0.893 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.305 -2.612 -26.027 27.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.178 3.822 3 H 0.068 0.932 4 C -0.573 4.573 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.519 5.519 8 Si 0.731 3.269 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.209 1.209 12 N -0.366 5.366 13 C 0.391 3.609 14 O -0.454 6.454 15 N -0.342 5.342 16 C 0.122 3.878 17 C -0.180 4.180 18 C -0.081 4.081 19 C -0.018 4.018 20 N -0.306 5.306 21 C -0.019 4.019 22 C -0.168 4.168 23 C -0.192 4.192 24 C 0.305 3.695 25 O -0.391 6.391 26 C 0.108 3.892 27 F -0.110 7.110 28 C -0.175 4.175 29 H 0.110 0.890 30 H 0.035 0.965 31 H 0.045 0.955 32 H 0.075 0.925 33 H 0.220 0.780 34 H 0.243 0.757 35 H 0.155 0.845 36 H 0.153 0.847 37 H 0.093 0.907 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.111 0.889 41 H 0.122 0.878 42 H 0.125 0.875 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 7.306 -1.359 -25.452 26.515 hybrid contribution 0.585 -1.119 1.005 1.615 sum 7.892 -2.479 -24.447 25.808 Atomic orbital electron populations 1.22112 0.98411 0.99174 1.01080 1.18732 0.90959 0.93793 0.78749 0.93176 1.21222 1.32515 1.13389 0.90163 0.91980 1.24892 0.94787 0.94985 0.99091 1.69910 1.35663 1.22420 1.23892 0.86366 0.78571 0.79484 0.82486 1.19761 1.20848 1.20857 1.45891 1.68232 1.13377 1.09098 1.16192 0.78725 0.85546 0.80421 1.90903 1.56729 1.14033 1.83759 1.42930 1.68333 1.16471 1.06473 1.17282 0.94434 0.91192 0.84857 1.20802 1.05525 1.01074 0.90626 1.20820 0.97103 0.92058 0.98105 1.17228 1.09660 0.91678 0.83228 1.45471 1.11436 1.54706 1.18957 1.22243 0.87010 1.02656 0.89980 1.22634 0.96467 1.01652 0.96001 1.22314 0.98995 1.02149 0.95789 1.21115 0.83947 0.77553 0.86846 1.90781 1.21375 1.58701 1.68212 1.17735 1.00040 0.78142 0.93273 1.91487 1.90473 1.31838 1.97229 1.21322 1.03406 0.95019 0.97792 0.89001 0.96509 0.95458 0.92530 0.78030 0.75738 0.84522 0.84705 0.90657 0.89920 0.89719 0.88889 0.87776 0.87522 0.82025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.72 9.26 37.16 0.34 -3.37 16 2 C 0.28 7.01 2.56 -69.08 -0.18 6.83 16 3 H 0.05 1.46 7.58 -51.93 -0.39 1.06 16 4 C -0.53 -13.88 8.73 -34.44 -0.30 -14.18 16 5 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -24.68 11.31 55.43 0.63 -24.05 16 8 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 9 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 N -0.72 -14.38 5.07 -59.81 -0.30 -14.68 16 13 C 0.69 13.60 8.37 -86.91 -0.73 12.87 16 14 O -0.58 -13.81 13.44 5.29 0.07 -13.74 16 15 N -0.69 -9.97 5.35 -14.19 -0.08 -10.05 16 16 C 0.22 3.16 6.30 -83.62 -0.53 2.63 16 17 C -0.16 -1.77 9.96 -39.40 -0.39 -2.16 16 18 C -0.06 -0.68 9.96 -39.43 -0.39 -1.07 16 19 C 0.07 0.97 5.39 -83.51 -0.45 0.52 16 20 N -0.57 -6.44 2.78 -112.04 -0.31 -6.75 16 21 C 0.10 0.68 7.29 -3.03 -0.02 0.65 16 22 C -0.13 -0.54 7.19 -25.00 -0.18 -0.72 16 23 C -0.15 -1.05 6.86 -26.74 -0.18 -1.23 16 24 C 0.52 6.49 7.98 -10.86 -0.09 6.40 16 25 O -0.52 -9.11 17.71 5.53 0.10 -9.01 16 26 C 0.13 2.01 7.31 -39.28 -0.29 1.72 16 27 F -0.13 -2.15 17.07 2.25 0.04 -2.11 16 28 C -0.15 -2.52 8.67 -39.36 -0.34 -2.86 16 29 H 0.09 2.49 6.06 -51.93 -0.31 2.17 16 30 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 33 H 0.39 6.50 8.56 -40.82 -0.35 6.15 16 34 H 0.41 4.20 8.84 -40.82 -0.36 3.84 16 35 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 36 H 0.14 1.16 8.06 -52.49 -0.42 0.73 16 37 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 41 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.11 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.16 3.07 6.21 -52.49 -0.33 2.74 16 LS Contribution 369.27 15.07 5.56 5.56 Total: -1.00 -35.26 369.27 -8.64 -43.90 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -5.51 Total: 7.88 kcal Atomic # 6 Polarization: 11.51 SS G_CDS: -3.82 Total: 7.69 kcal Atomic # 7 Polarization: -55.47 SS G_CDS: -0.06 Total: -55.53 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: 0.17 Total: -22.75 kcal Atomic # 9 Polarization: -2.15 SS G_CDS: 0.04 Total: -2.11 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.26 -8.64 -43.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274750501.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.846 kcal (2) G-P(sol) polarization free energy of solvation -35.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds