Wall clock time and date at job start Tue Mar 31 2020 18:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47075 * 2 1 4 4 C 1.50698 * 109.46818 * 119.99983 * 2 1 3 5 5 H 1.08006 * 120.00015 * 120.00083 * 4 2 1 6 6 C 1.37881 * 119.99990 * 300.27488 * 4 2 1 7 7 N 1.31506 * 120.00041 * 359.72934 * 6 4 2 8 8 Si 1.86803 * 119.99654 * 179.72609 * 6 4 2 9 9 H 1.48497 * 109.47494 * 359.97438 * 8 6 4 10 10 H 1.48506 * 109.46985 * 120.00387 * 8 6 4 11 11 H 1.48497 * 109.46993 * 239.99990 * 8 6 4 12 12 N 1.46499 * 109.47353 * 239.99874 * 2 1 3 13 13 C 1.34781 * 119.99707 * 85.00068 * 12 2 1 14 14 O 1.21584 * 119.99996 * 0.02562 * 13 12 2 15 15 N 1.34779 * 119.99352 * 180.02562 * 13 12 2 16 16 C 1.40105 * 119.99153 * 175.38662 * 15 13 12 17 17 C 1.38871 * 119.98769 * 214.82355 * 16 15 13 18 18 C 1.38083 * 120.04004 * 179.76936 * 17 16 15 19 19 C 1.38804 * 120.02544 * 0.50981 * 18 17 16 20 20 N 1.40210 * 120.01280 * 179.72427 * 19 18 17 21 21 C 1.46763 * 124.34893 * 269.74639 * 20 19 18 22 22 C 1.54651 * 105.38258 * 162.85131 * 21 20 19 23 23 C 1.54637 * 101.68464 * 25.76812 * 22 21 20 24 24 C 1.34414 * 124.34991 * 90.04337 * 20 19 18 25 25 O 1.21306 * 124.94369 * 0.38642 * 24 20 19 26 26 C 1.39051 * 119.97752 * 359.74186 * 19 18 17 27 27 F 1.35100 * 120.01826 * 179.97438 * 26 19 18 28 28 C 1.38243 * 119.96305 * 0.02562 * 26 19 18 29 29 H 1.08998 * 109.47140 * 300.00107 * 1 2 3 30 30 H 1.09005 * 109.47154 * 60.00148 * 1 2 3 31 31 H 1.08998 * 109.47075 * 180.02562 * 1 2 3 32 32 H 0.97000 * 119.99927 * 180.02562 * 7 6 4 33 33 H 0.96995 * 119.99977 * 265.00091 * 12 2 1 34 34 H 0.96992 * 120.00243 * 355.38870 * 15 13 12 35 35 H 1.07995 * 119.98037 * 359.97438 * 17 16 15 36 36 H 1.07998 * 119.99125 * 180.23144 * 18 17 16 37 37 H 1.09005 * 110.24272 * 281.98523 * 21 20 19 38 38 H 1.09002 * 110.24305 * 43.97651 * 21 20 19 39 39 H 1.09000 * 111.19605 * 267.59758 * 22 21 20 40 40 H 1.08998 * 110.81981 * 143.77245 * 22 21 20 41 41 H 1.09003 * 110.48564 * 216.30745 * 23 22 21 42 42 H 1.08998 * 110.48559 * 93.66125 * 23 22 21 43 43 H 1.07995 * 120.01288 * 180.02562 * 28 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6944 -0.2426 2.4827 7 7 0.9383 0.8265 2.6034 8 14 2.3108 -1.1278 4.0079 9 1 3.1363 -2.2941 3.6038 10 1 3.1330 -0.1970 4.8221 11 1 1.1524 -1.5962 4.8104 12 7 2.0184 -0.6906 -1.1961 13 6 2.1471 -0.0182 -2.3571 14 8 1.8584 1.1616 -2.4116 15 7 2.5959 -0.6538 -3.4576 16 6 2.6384 0.0184 -4.6862 17 6 2.3832 -0.6716 -5.8640 18 6 2.4201 -0.0092 -7.0751 19 6 2.7227 1.3448 -7.1172 20 7 2.7657 2.0158 -8.3475 21 6 3.9698 2.1504 -9.1757 22 6 3.4595 2.5505 -10.5797 23 6 2.1147 3.2347 -10.2408 24 6 1.7108 2.6235 -8.9173 25 8 0.5968 2.6741 -8.4399 26 6 2.9835 2.0354 -5.9388 27 9 3.2786 3.3532 -5.9789 28 6 2.9417 1.3726 -4.7264 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.7010 1.1558 3.4844 33 1 2.2491 -1.6317 -1.1525 34 1 2.8895 -1.5764 -3.3991 35 1 2.1526 -1.7262 -5.8326 36 1 2.2178 -0.5458 -7.9902 37 1 4.6203 2.9265 -8.7723 38 1 4.5014 1.2001 -9.2255 39 1 3.3034 1.6730 -11.2072 40 1 4.1448 3.2518 -11.0557 41 1 1.3707 3.0135 -11.0061 42 1 2.2497 4.3114 -10.1384 43 1 3.1437 1.9083 -3.8106 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274750501.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:22 Heat of formation + Delta-G solvation = -95.453138 kcal Electronic energy + Delta-G solvation = -28231.620395 eV Core-core repulsion = 23997.567197 eV Total energy + Delta-G solvation = -4234.053198 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.09602 -41.90989 -41.43764 -39.56668 -37.63183 -36.90221 -35.81901 -34.44486 -33.30752 -31.78943 -30.93122 -28.99012 -28.52168 -27.35296 -24.85551 -24.04632 -23.09164 -22.68977 -21.68482 -20.98488 -20.01146 -19.36770 -18.59990 -18.14429 -17.72375 -17.32505 -17.12610 -16.74866 -16.57240 -16.26924 -16.11660 -15.91882 -15.52292 -15.20973 -14.80443 -14.73708 -14.55238 -14.41911 -14.04567 -13.92637 -13.76094 -13.53120 -13.16129 -13.00178 -12.91979 -12.88295 -12.74384 -12.35759 -12.29630 -12.12041 -11.87377 -11.57118 -11.18865 -11.11206 -10.98670 -10.63314 -10.05862 -9.97593 -9.89613 -9.19157 -8.18739 -6.36356 -0.14650 0.07236 1.41496 1.44805 1.45066 1.56180 1.61491 1.86062 2.00669 2.40408 2.49542 3.02958 3.12234 3.38013 3.44324 3.66656 3.71153 4.00535 4.05674 4.10556 4.17308 4.36145 4.51203 4.64243 4.70578 4.73891 4.85599 4.86310 4.90875 5.00425 5.07401 5.10813 5.12911 5.23200 5.24158 5.36695 5.51968 5.57147 5.62085 5.80505 5.86222 5.98605 6.06780 6.19068 6.71667 7.04659 7.16836 7.32247 7.60215 8.88067 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.030797 B = 0.002187 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.973330 B =12798.019315 C =12969.557256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.287 3.713 3 H -0.002 1.002 4 C -0.543 4.543 5 H 0.078 0.922 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.976 3.024 9 H -0.257 1.257 10 H -0.286 1.286 11 H -0.280 1.280 12 N -0.709 5.709 13 C 0.691 3.309 14 O -0.626 6.626 15 N -0.670 5.670 16 C 0.199 3.801 17 C -0.130 4.130 18 C -0.053 4.053 19 C 0.074 3.926 20 N -0.577 5.577 21 C 0.093 3.907 22 C -0.111 4.111 23 C -0.145 4.145 24 C 0.501 3.499 25 O -0.583 6.583 26 C 0.100 3.900 27 F -0.147 7.147 28 C -0.176 4.176 29 H 0.067 0.933 30 H 0.008 0.992 31 H 0.043 0.957 32 H 0.265 0.735 33 H 0.407 0.593 34 H 0.430 0.570 35 H 0.181 0.819 36 H 0.173 0.827 37 H 0.074 0.926 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.121 0.879 41 H 0.119 0.881 42 H 0.116 0.884 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.731 -5.816 -28.792 30.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.184 3.816 3 H 0.016 0.984 4 C -0.581 4.581 5 H 0.096 0.904 6 C -0.188 4.188 7 N -0.557 5.557 8 Si 0.801 3.199 9 H -0.180 1.180 10 H -0.212 1.212 11 H -0.205 1.205 12 N -0.361 5.361 13 C 0.391 3.609 14 O -0.506 6.506 15 N -0.320 5.320 16 C 0.102 3.898 17 C -0.151 4.151 18 C -0.072 4.072 19 C -0.018 4.018 20 N -0.307 5.307 21 C -0.027 4.027 22 C -0.149 4.149 23 C -0.185 4.185 24 C 0.292 3.708 25 O -0.462 6.462 26 C 0.079 3.921 27 F -0.126 7.126 28 C -0.198 4.198 29 H 0.086 0.914 30 H 0.027 0.973 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.243 0.757 34 H 0.270 0.730 35 H 0.199 0.801 36 H 0.190 0.810 37 H 0.092 0.908 38 H 0.123 0.877 39 H 0.123 0.877 40 H 0.140 0.860 41 H 0.137 0.863 42 H 0.134 0.866 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 8.815 -4.638 -28.293 29.995 hybrid contribution 0.183 -0.068 1.748 1.759 sum 8.998 -4.706 -26.544 28.420 Atomic orbital electron populations 1.21933 0.98461 0.99586 0.99445 1.18281 0.90869 0.91718 0.80760 0.98387 1.21548 1.32492 1.13696 0.90405 0.90388 1.25843 0.94881 0.95634 1.02477 1.70069 1.36969 1.24056 1.24604 0.85237 0.78023 0.78492 0.78192 1.18046 1.21169 1.20535 1.45416 1.68476 1.14092 1.08129 1.16303 0.78415 0.84923 0.81268 1.90892 1.58615 1.16459 1.84683 1.42458 1.67299 1.17151 1.05057 1.17476 0.95979 0.90631 0.85676 1.21205 1.02284 1.02736 0.88850 1.21263 0.95332 0.91090 0.99541 1.17541 1.08148 0.92664 0.83446 1.45822 1.12857 1.53794 1.18246 1.22615 0.85468 1.04024 0.90611 1.22693 0.94820 1.02752 0.94593 1.22392 1.00981 1.02447 0.92654 1.22216 0.83187 0.76904 0.88509 1.90736 1.24043 1.61145 1.70250 1.17997 1.02113 0.77846 0.94184 1.91432 1.90885 1.32943 1.97328 1.21133 1.05470 0.96383 0.96846 0.91422 0.97316 0.93783 0.92552 0.75730 0.72986 0.80138 0.80995 0.90754 0.87721 0.87741 0.86040 0.86313 0.86627 0.85869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.97 9.26 71.98 0.67 -6.30 16 2 C 0.29 14.91 2.56 44.24 0.11 15.03 16 3 H 0.00 -0.11 7.58 -2.39 -0.02 -0.13 16 4 C -0.54 -28.28 8.73 25.60 0.22 -28.05 16 5 H 0.08 3.73 7.74 -2.91 -0.02 3.71 16 6 C 0.01 0.62 5.30 84.66 0.45 1.07 16 7 N -0.92 -52.97 11.31 21.45 0.24 -52.72 16 8 Si 0.98 41.62 29.54 68.60 2.03 43.65 16 9 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 10 H -0.29 -12.24 7.11 99.48 0.71 -11.54 16 11 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 12 N -0.71 -28.71 5.07 -461.41 -2.34 -31.05 16 13 C 0.69 27.91 8.37 179.05 1.50 29.41 16 14 O -0.63 -32.01 13.44 -3.98 -0.05 -32.07 16 15 N -0.67 -18.71 5.35 -317.07 -1.70 -20.41 16 16 C 0.20 5.61 6.30 38.11 0.24 5.85 16 17 C -0.13 -2.48 9.96 22.38 0.22 -2.26 16 18 C -0.05 -1.01 9.96 22.37 0.22 -0.79 16 19 C 0.07 1.90 5.39 38.13 0.21 2.11 16 20 N -0.58 -12.19 2.78 -626.98 -1.74 -13.94 16 21 C 0.09 0.96 7.29 86.89 0.63 1.59 16 22 C -0.11 -0.46 7.19 31.71 0.23 -0.24 16 23 C -0.14 -1.66 6.86 30.59 0.21 -1.45 16 24 C 0.50 12.28 7.98 87.90 0.70 12.99 16 25 O -0.58 -21.19 17.71 -3.11 -0.06 -21.25 16 26 C 0.10 3.26 7.31 22.47 0.16 3.43 16 27 F -0.15 -5.22 17.07 44.97 0.77 -4.46 16 28 C -0.18 -6.18 8.67 22.41 0.19 -5.99 16 29 H 0.07 3.82 6.06 -2.39 -0.01 3.80 16 30 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 31 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 33 H 0.41 13.10 8.56 -92.71 -0.79 12.31 16 34 H 0.43 7.77 8.84 -92.71 -0.82 6.96 16 35 H 0.18 1.91 8.06 -2.91 -0.02 1.89 16 36 H 0.17 2.09 8.06 -2.91 -0.02 2.07 16 37 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 38 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.10 0.10 8.14 -2.39 -0.02 0.08 16 40 H 0.12 -0.08 8.14 -2.39 -0.02 -0.10 16 41 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.12 5.25 6.21 -2.91 -0.02 5.23 16 Total: -1.00 -85.00 369.27 2.58 -82.41 By element: Atomic # 1 Polarization: 23.97 SS G_CDS: -0.54 Total: 23.43 kcal Atomic # 6 Polarization: 20.42 SS G_CDS: 5.97 Total: 26.40 kcal Atomic # 7 Polarization: -112.58 SS G_CDS: -5.54 Total: -118.12 kcal Atomic # 8 Polarization: -53.21 SS G_CDS: -0.11 Total: -53.31 kcal Atomic # 9 Polarization: -5.22 SS G_CDS: 0.77 Total: -4.46 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Total: -85.00 2.58 -82.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274750501.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.042 kcal (2) G-P(sol) polarization free energy of solvation -84.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds