Wall clock time and date at job start Tue Mar 31 2020 18:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.37090 * 119.99467 * 2 1 4 4 H 1.08003 * 119.99978 * 142.83028 * 3 2 1 5 5 C 1.38952 * 120.00351 * 322.82777 * 3 2 1 6 6 N 1.31412 * 119.99830 * 158.41000 * 5 3 2 7 7 Si 1.86791 * 120.00114 * 338.40912 * 5 3 2 8 8 H 1.48507 * 109.47028 * 95.71811 * 7 5 3 9 9 H 1.48500 * 109.47595 * 215.71957 * 7 5 3 10 10 H 1.48496 * 109.47126 * 335.72170 * 7 5 3 11 11 C 1.34772 * 120.00147 * 180.02562 * 2 1 3 12 12 O 1.21288 * 120.00075 * 179.97438 * 11 2 1 13 13 C 1.50704 * 120.00228 * 359.97438 * 11 2 1 14 14 C 1.52993 * 109.47247 * 179.97438 * 13 11 2 15 15 N 1.46500 * 109.47293 * 180.02562 * 14 13 11 16 16 C 1.34737 * 126.50546 * 265.03068 * 15 14 13 17 17 N 1.30869 * 109.71207 * 179.97438 * 16 15 14 18 18 C 1.33545 * 109.80548 * 359.97438 * 17 16 15 19 19 C 1.38052 * 126.50531 * 84.71615 * 15 14 13 20 20 C 1.41156 * 134.58707 * 0.75244 * 19 15 14 21 21 O 1.21799 * 120.38878 * 359.27103 * 20 19 15 22 22 N 1.34926 * 119.22746 * 179.55113 * 20 19 15 23 23 C 1.46497 * 119.51086 * 179.76350 * 22 20 19 24 24 C 1.34426 * 120.98903 * 359.74065 * 22 20 19 25 25 O 1.21600 * 119.16625 * 179.97438 * 24 22 20 26 26 N 1.34638 * 121.66364 * 0.02562 * 24 22 20 27 27 C 1.46497 * 119.94839 * 180.02562 * 26 24 22 28 28 H 1.09008 * 109.46627 * 265.13200 * 1 2 3 29 29 H 1.08995 * 109.47342 * 25.12860 * 1 2 3 30 30 H 1.08993 * 109.46975 * 145.13615 * 1 2 3 31 31 H 0.97006 * 119.99973 * 180.02562 * 6 5 3 32 32 H 1.08999 * 109.47049 * 300.00924 * 13 11 2 33 33 H 1.09001 * 109.46734 * 60.00132 * 13 11 2 34 34 H 1.08998 * 109.47349 * 300.00271 * 14 13 11 35 35 H 1.09001 * 109.46954 * 60.00502 * 14 13 11 36 36 H 1.07996 * 125.14294 * 359.97438 * 16 15 14 37 37 H 1.09003 * 109.47982 * 179.97438 * 23 22 20 38 38 H 1.09002 * 109.46888 * 299.98167 * 23 22 20 39 39 H 1.09007 * 109.47005 * 59.97432 * 23 22 20 40 40 H 1.09002 * 109.46795 * 269.97888 * 27 26 24 41 41 H 1.09002 * 109.46896 * 29.97470 * 27 26 24 42 42 H 1.08998 * 109.47190 * 149.97586 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.0659 1.2824 0.5651 5 6 1.6673 2.2684 -0.7271 6 7 2.0431 3.4890 -0.4174 7 14 0.4839 1.9868 -2.1445 8 1 -0.9114 2.1585 -1.6660 9 1 0.7614 2.9684 -3.2237 10 1 0.6607 0.6095 -2.6707 11 6 2.1389 -1.1671 -0.0005 12 8 3.3518 -1.1671 -0.0010 13 6 1.3855 -2.4723 -0.0005 14 6 2.3798 -3.6351 -0.0018 15 7 1.6474 -4.9039 -0.0024 16 6 1.3283 -5.6458 1.0761 17 7 0.6730 -6.7140 0.6990 18 6 0.5365 -6.7155 -0.6295 19 6 1.1478 -5.5633 -1.1076 20 6 1.1566 -5.3154 -2.4972 21 8 1.6892 -4.3140 -2.9411 22 7 0.5631 -6.1978 -3.3276 23 6 0.5640 -5.9441 -4.7705 24 6 -0.0287 -7.3067 -2.8509 25 8 -0.5540 -8.0793 -3.6292 26 7 -0.0553 -7.5829 -1.5335 27 6 -0.7103 -8.8028 -1.0550 28 1 -0.3633 -0.0872 1.0241 29 1 -0.3634 0.9303 -0.4364 30 1 -0.3633 -0.8432 -0.5874 31 1 1.7056 4.2438 -0.9247 32 1 0.7591 -2.5302 0.8896 33 1 0.7586 -2.5298 -0.8903 34 1 3.0058 -3.5770 -0.8922 35 1 3.0070 -3.5778 0.8878 36 1 1.5760 -5.3967 2.0973 37 1 0.0449 -6.7544 -5.2824 38 1 0.0561 -5.0013 -4.9739 39 1 1.5920 -5.8876 -5.1288 40 1 -1.7596 -8.5940 -0.8467 41 1 -0.6386 -9.5771 -1.8189 42 1 -0.2200 -9.1450 -0.1437 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330386761.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:06 Heat of formation + Delta-G solvation = 13.775535 kcal Electronic energy + Delta-G solvation = -29493.136646 eV Core-core repulsion = 25283.739920 eV Total energy + Delta-G solvation = -4209.396725 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.27981 -41.34869 -39.26631 -38.90141 -36.74091 -35.53257 -35.12446 -34.37112 -32.17749 -31.24372 -30.19259 -28.08136 -27.00753 -26.59291 -25.77651 -24.11407 -23.80972 -23.02369 -21.35944 -19.60855 -18.97618 -18.58714 -17.56169 -17.42826 -17.16038 -16.55361 -16.02166 -15.85526 -15.62459 -15.46676 -15.35217 -15.13540 -15.06366 -14.56801 -13.99528 -13.84508 -13.53297 -13.36952 -13.13425 -12.76383 -12.68103 -12.62675 -12.55897 -12.26651 -12.18970 -11.75790 -11.43150 -11.18867 -11.01475 -10.82249 -10.71863 -10.44244 -10.33883 -10.11916 -9.99078 -9.83559 -9.17386 -8.70034 -8.38539 -7.85767 -6.47458 -4.05572 0.69265 1.42776 1.72227 2.28057 2.36934 2.62397 2.97443 3.17740 3.21037 3.23769 3.57031 3.73492 4.07534 4.15738 4.25178 4.44194 4.65262 4.83611 4.89919 4.90738 5.01121 5.05925 5.13463 5.14934 5.28516 5.34230 5.38249 5.41338 5.47492 5.54007 5.66639 5.78644 5.87068 5.90091 6.05650 6.18800 6.21452 6.62524 6.92609 7.23524 7.27226 7.43903 7.67913 8.17246 8.38223 8.84957 9.21669 9.62230 10.64218 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.017169 B = 0.003314 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.441907 B = 8446.165708 C = 9356.268109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.464 5.464 3 C -0.320 4.320 4 H 0.108 0.892 5 C 0.061 3.939 6 N -0.861 5.861 7 Si 0.878 3.122 8 H -0.275 1.275 9 H -0.286 1.286 10 H -0.263 1.263 11 C 0.468 3.532 12 O -0.566 6.566 13 C -0.149 4.149 14 C 0.119 3.881 15 N -0.402 5.402 16 C 0.265 3.735 17 N -0.501 5.501 18 C 0.307 3.693 19 C -0.147 4.147 20 C 0.587 3.413 21 O -0.496 6.496 22 N -0.553 5.553 23 C 0.083 3.917 24 C 0.709 3.291 25 O -0.543 6.543 26 N -0.511 5.511 27 C 0.092 3.908 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.275 0.725 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.230 0.770 37 H 0.103 0.897 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.090 0.910 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.187 -22.121 -0.154 23.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.186 5.186 3 C -0.447 4.447 4 H 0.125 0.875 5 C -0.145 4.145 6 N -0.497 5.497 7 Si 0.706 3.294 8 H -0.202 1.202 9 H -0.212 1.212 10 H -0.188 1.188 11 C 0.255 3.745 12 O -0.449 6.449 13 C -0.190 4.190 14 C -0.002 4.002 15 N -0.081 5.081 16 C -0.018 4.018 17 N -0.225 5.225 18 C 0.075 3.925 19 C -0.265 4.265 20 C 0.381 3.619 21 O -0.370 6.370 22 N -0.298 5.298 23 C -0.057 4.057 24 C 0.412 3.588 25 O -0.416 6.416 26 N -0.239 5.239 27 C -0.049 4.049 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.246 0.754 37 H 0.122 0.878 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.089 0.911 41 H 0.109 0.891 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.796 -22.220 -0.439 23.240 hybrid contribution -0.550 0.759 -1.105 1.449 sum -7.346 -21.461 -1.544 22.736 Atomic orbital electron populations 1.22027 0.83319 1.01744 1.01047 1.43639 1.04092 1.05673 1.65160 1.19057 1.10336 0.85254 1.30036 0.87488 1.25362 0.97432 0.94771 0.96985 1.69747 1.43622 0.98112 1.38197 0.86951 0.80127 0.79265 0.83087 1.20246 1.21240 1.18776 1.19779 0.87968 0.84230 0.82493 1.90579 1.13589 1.86901 1.53836 1.21915 0.99137 0.93858 1.04117 1.21999 0.93503 0.77316 1.07338 1.45160 1.39404 1.18982 1.04587 1.25329 0.95654 0.86637 0.94188 1.69659 1.22171 1.22541 1.08144 1.18089 0.96073 0.88866 0.89474 1.18827 1.17273 0.99956 0.90461 1.15520 0.78837 0.83058 0.84512 1.90987 1.42355 1.25386 1.78248 1.45820 1.52169 1.20908 1.10936 1.21971 1.04454 1.03985 0.75325 1.15438 0.79910 0.82039 0.81424 1.90998 1.49195 1.47854 1.53584 1.43776 1.54093 1.23109 1.02919 1.21931 0.97769 0.83895 1.01336 0.92785 0.91444 0.92840 0.91456 0.89423 0.89258 0.86867 0.86821 0.75375 0.87811 0.90043 0.90077 0.91070 0.89093 0.89069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.19 8.78 59.85 0.53 1.71 16 2 N -0.46 -10.93 2.59 -122.19 -0.32 -11.24 16 3 C -0.32 -8.92 9.37 -14.94 -0.14 -9.06 16 4 H 0.11 3.33 7.90 -52.48 -0.41 2.92 16 5 C 0.06 1.67 5.29 -17.47 -0.09 1.57 16 6 N -0.86 -24.63 13.96 55.50 0.77 -23.86 16 7 Si 0.88 20.55 24.96 -169.99 -4.24 16.30 16 8 H -0.28 -5.94 6.69 56.52 0.38 -5.57 16 9 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.26 -6.23 7.11 56.52 0.40 -5.83 16 11 C 0.47 10.21 7.63 -10.99 -0.08 10.12 16 12 O -0.57 -14.30 15.85 5.55 0.09 -14.21 16 13 C -0.15 -2.32 4.64 -27.88 -0.13 -2.45 16 14 C 0.12 1.61 5.16 -4.05 -0.02 1.59 16 15 N -0.40 -4.77 2.78 -115.75 -0.32 -5.09 16 16 C 0.27 2.44 12.49 -90.34 -1.13 1.31 16 17 N -0.50 -5.47 11.16 -13.38 -0.15 -5.62 16 18 C 0.31 3.72 7.64 -154.55 -1.18 2.54 16 19 C -0.15 -1.98 6.90 -83.70 -0.58 -2.56 16 20 C 0.59 8.59 7.44 -15.09 -0.11 8.48 16 21 O -0.50 -8.65 16.14 5.10 0.08 -8.57 16 22 N -0.55 -7.04 2.96 -131.62 -0.39 -7.43 16 23 C 0.08 0.84 9.99 59.85 0.60 1.44 16 24 C 0.71 8.90 8.12 -87.36 -0.71 8.19 16 25 O -0.54 -7.35 15.01 5.28 0.08 -7.27 16 26 N -0.51 -5.79 3.06 -128.31 -0.39 -6.18 16 27 C 0.09 0.73 10.39 59.85 0.62 1.35 16 28 H 0.05 0.88 8.14 -51.92 -0.42 0.46 16 29 H 0.07 1.38 3.42 -51.93 -0.18 1.20 16 30 H 0.05 0.87 6.64 -51.93 -0.34 0.53 16 31 H 0.28 7.27 8.31 -40.82 -0.34 6.93 16 32 H 0.09 1.11 8.11 -51.93 -0.42 0.69 16 33 H 0.09 1.45 7.41 -51.93 -0.38 1.07 16 34 H 0.11 1.83 7.46 -51.93 -0.39 1.44 16 35 H 0.11 1.32 8.09 -51.93 -0.42 0.90 16 36 H 0.23 1.04 8.06 -52.49 -0.42 0.62 16 37 H 0.10 0.94 6.80 -51.93 -0.35 0.58 16 38 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.08 0.76 8.14 -51.92 -0.42 0.33 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.09 0.68 7.38 -51.93 -0.38 0.29 16 42 H 0.09 0.63 8.01 -51.93 -0.42 0.21 16 LS Contribution 353.36 15.07 5.33 5.33 Total: -1.00 -35.85 353.36 -6.87 -42.71 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -4.97 Total: 0.89 kcal Atomic # 6 Polarization: 26.67 SS G_CDS: -2.43 Total: 24.24 kcal Atomic # 7 Polarization: -58.62 SS G_CDS: -0.79 Total: -59.42 kcal Atomic # 8 Polarization: -30.31 SS G_CDS: 0.25 Total: -30.06 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.24 Total: 16.30 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -35.85 -6.87 -42.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330386761.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.490 kcal (2) G-P(sol) polarization free energy of solvation -35.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds