Wall clock time and date at job start Tue Mar 31 2020 18:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.37090 * 119.99467 * 2 1 4 4 H 1.08003 * 119.99978 * 142.83028 * 3 2 1 5 5 C 1.38952 * 120.00351 * 322.82777 * 3 2 1 6 6 N 1.31412 * 119.99830 * 158.41000 * 5 3 2 7 7 Si 1.86791 * 120.00114 * 338.40912 * 5 3 2 8 8 H 1.48507 * 109.47028 * 95.71811 * 7 5 3 9 9 H 1.48500 * 109.47595 * 215.71957 * 7 5 3 10 10 H 1.48496 * 109.47126 * 335.72170 * 7 5 3 11 11 C 1.34772 * 120.00147 * 180.02562 * 2 1 3 12 12 O 1.21288 * 120.00075 * 179.97438 * 11 2 1 13 13 C 1.50704 * 120.00228 * 359.97438 * 11 2 1 14 14 C 1.52993 * 109.47247 * 179.97438 * 13 11 2 15 15 N 1.46500 * 109.47293 * 180.02562 * 14 13 11 16 16 C 1.34737 * 126.50546 * 265.03068 * 15 14 13 17 17 N 1.30869 * 109.71207 * 179.97438 * 16 15 14 18 18 C 1.33545 * 109.80548 * 359.97438 * 17 16 15 19 19 C 1.38052 * 126.50531 * 84.71615 * 15 14 13 20 20 C 1.41156 * 134.58707 * 0.75244 * 19 15 14 21 21 O 1.21799 * 120.38878 * 359.27103 * 20 19 15 22 22 N 1.34926 * 119.22746 * 179.55113 * 20 19 15 23 23 C 1.46497 * 119.51086 * 179.76350 * 22 20 19 24 24 C 1.34426 * 120.98903 * 359.74065 * 22 20 19 25 25 O 1.21600 * 119.16625 * 179.97438 * 24 22 20 26 26 N 1.34638 * 121.66364 * 0.02562 * 24 22 20 27 27 C 1.46497 * 119.94839 * 180.02562 * 26 24 22 28 28 H 1.09008 * 109.46627 * 265.13200 * 1 2 3 29 29 H 1.08995 * 109.47342 * 25.12860 * 1 2 3 30 30 H 1.08993 * 109.46975 * 145.13615 * 1 2 3 31 31 H 0.97006 * 119.99973 * 180.02562 * 6 5 3 32 32 H 1.08999 * 109.47049 * 300.00924 * 13 11 2 33 33 H 1.09001 * 109.46734 * 60.00132 * 13 11 2 34 34 H 1.08998 * 109.47349 * 300.00271 * 14 13 11 35 35 H 1.09001 * 109.46954 * 60.00502 * 14 13 11 36 36 H 1.07996 * 125.14294 * 359.97438 * 16 15 14 37 37 H 1.09003 * 109.47982 * 179.97438 * 23 22 20 38 38 H 1.09002 * 109.46888 * 299.98167 * 23 22 20 39 39 H 1.09007 * 109.47005 * 59.97432 * 23 22 20 40 40 H 1.09002 * 109.46795 * 269.97888 * 27 26 24 41 41 H 1.09002 * 109.46896 * 29.97470 * 27 26 24 42 42 H 1.08998 * 109.47190 * 149.97586 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.0659 1.2824 0.5651 5 6 1.6673 2.2684 -0.7271 6 7 2.0431 3.4890 -0.4174 7 14 0.4839 1.9868 -2.1445 8 1 -0.9114 2.1585 -1.6660 9 1 0.7614 2.9684 -3.2237 10 1 0.6607 0.6095 -2.6707 11 6 2.1389 -1.1671 -0.0005 12 8 3.3518 -1.1671 -0.0010 13 6 1.3855 -2.4723 -0.0005 14 6 2.3798 -3.6351 -0.0018 15 7 1.6474 -4.9039 -0.0024 16 6 1.3283 -5.6458 1.0761 17 7 0.6730 -6.7140 0.6990 18 6 0.5365 -6.7155 -0.6295 19 6 1.1478 -5.5633 -1.1076 20 6 1.1566 -5.3154 -2.4972 21 8 1.6892 -4.3140 -2.9411 22 7 0.5631 -6.1978 -3.3276 23 6 0.5640 -5.9441 -4.7705 24 6 -0.0287 -7.3067 -2.8509 25 8 -0.5540 -8.0793 -3.6292 26 7 -0.0553 -7.5829 -1.5335 27 6 -0.7103 -8.8028 -1.0550 28 1 -0.3633 -0.0872 1.0241 29 1 -0.3634 0.9303 -0.4364 30 1 -0.3633 -0.8432 -0.5874 31 1 1.7056 4.2438 -0.9247 32 1 0.7591 -2.5302 0.8896 33 1 0.7586 -2.5298 -0.8903 34 1 3.0058 -3.5770 -0.8922 35 1 3.0070 -3.5778 0.8878 36 1 1.5760 -5.3967 2.0973 37 1 0.0449 -6.7544 -5.2824 38 1 0.0561 -5.0013 -4.9739 39 1 1.5920 -5.8876 -5.1288 40 1 -1.7596 -8.5940 -0.8467 41 1 -0.6386 -9.5771 -1.8189 42 1 -0.2200 -9.1450 -0.1437 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330386761.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:05 Heat of formation + Delta-G solvation = -10.453400 kcal Electronic energy + Delta-G solvation = -29494.187291 eV Core-core repulsion = 25283.739920 eV Total energy + Delta-G solvation = -4210.447371 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.18980 -42.27909 -40.64672 -40.27387 -37.69739 -36.87920 -36.50940 -35.51954 -34.17801 -32.24475 -31.27772 -28.92140 -28.27341 -27.80792 -27.32159 -25.26276 -24.93675 -24.07657 -22.22813 -20.75362 -20.47236 -19.54516 -19.11369 -18.54724 -18.42481 -17.86978 -17.51582 -16.94943 -16.75265 -16.69091 -16.43220 -16.37539 -16.04955 -15.52652 -15.39139 -15.11740 -14.73146 -14.60725 -14.44844 -14.12946 -13.96806 -13.83527 -13.62431 -13.44531 -13.31793 -13.26338 -12.76277 -12.50998 -12.32209 -12.25059 -11.91762 -11.86434 -11.73038 -11.30856 -11.12383 -11.10973 -10.72867 -10.47695 -9.76109 -9.31340 -8.56009 -6.18303 -0.24533 0.55068 0.73036 1.14338 1.29249 1.38279 1.40437 1.53372 1.67335 1.86199 2.12552 2.24463 2.67038 2.86565 2.94556 3.29286 3.59720 3.67627 3.68839 3.93157 4.04764 4.20989 4.23272 4.30358 4.34706 4.35119 4.39636 4.49379 4.53519 4.58937 4.67860 4.73658 4.76410 4.80646 4.85956 4.95568 5.28339 5.47634 5.79094 5.99285 6.00151 6.23923 6.40518 6.48242 6.72941 6.88080 7.24369 7.78153 8.61042 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.017169 B = 0.003314 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.441907 B = 8446.165708 C = 9356.268109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.483 5.483 3 C -0.336 4.336 4 H 0.052 0.948 5 C 0.015 3.985 6 N -0.907 5.907 7 Si 0.947 3.053 8 H -0.238 1.238 9 H -0.290 1.290 10 H -0.268 1.268 11 C 0.465 3.535 12 O -0.610 6.610 13 C -0.131 4.131 14 C 0.132 3.868 15 N -0.409 5.409 16 C 0.295 3.705 17 N -0.508 5.508 18 C 0.318 3.682 19 C -0.181 4.181 20 C 0.584 3.416 21 O -0.539 6.539 22 N -0.555 5.555 23 C 0.080 3.920 24 C 0.707 3.293 25 O -0.555 6.555 26 N -0.510 5.510 27 C 0.088 3.912 28 H 0.085 0.915 29 H 0.054 0.946 30 H 0.086 0.914 31 H 0.281 0.719 32 H 0.130 0.870 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.136 0.864 36 H 0.279 0.721 37 H 0.114 0.886 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.799 -24.570 0.807 26.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.204 5.204 3 C -0.464 4.464 4 H 0.070 0.930 5 C -0.188 4.188 6 N -0.545 5.545 7 Si 0.771 3.229 8 H -0.162 1.162 9 H -0.217 1.217 10 H -0.192 1.192 11 C 0.254 3.746 12 O -0.495 6.495 13 C -0.172 4.172 14 C 0.011 3.989 15 N -0.089 5.089 16 C 0.013 3.987 17 N -0.232 5.232 18 C 0.085 3.915 19 C -0.298 4.298 20 C 0.379 3.621 21 O -0.416 6.416 22 N -0.299 5.299 23 C -0.060 4.060 24 C 0.409 3.591 25 O -0.430 6.430 26 N -0.237 5.237 27 C -0.052 4.052 28 H 0.103 0.897 29 H 0.072 0.928 30 H 0.104 0.896 31 H 0.090 0.910 32 H 0.148 0.852 33 H 0.106 0.894 34 H 0.098 0.902 35 H 0.154 0.846 36 H 0.295 0.705 37 H 0.133 0.867 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.113 0.887 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -9.467 -24.728 0.534 26.484 hybrid contribution 0.333 1.391 -1.285 1.923 sum -9.134 -23.336 -0.751 25.072 Atomic orbital electron populations 1.22236 0.80217 1.02400 1.03636 1.43799 1.06038 1.04731 1.65871 1.18701 1.09561 0.87772 1.30346 0.93032 1.26089 0.99672 0.94038 0.99001 1.69852 1.45861 0.99167 1.39616 0.85871 0.79709 0.78451 0.78860 1.16241 1.21686 1.19205 1.20816 0.87823 0.85867 0.80088 1.90553 1.16022 1.87918 1.55051 1.21780 0.99034 0.90494 1.05896 1.21691 0.92836 0.77522 1.06876 1.45028 1.40230 1.18742 1.04933 1.26450 0.92398 0.84727 0.95151 1.69782 1.23039 1.23285 1.07101 1.18223 0.94996 0.88229 0.90011 1.18869 1.19209 1.01318 0.90372 1.15788 0.78312 0.82679 0.85296 1.90961 1.44563 1.27123 1.78959 1.45934 1.51574 1.20682 1.11664 1.22114 1.04974 1.04526 0.74418 1.15510 0.79851 0.81815 0.81875 1.90988 1.49827 1.48165 1.54023 1.43994 1.53525 1.23682 1.02482 1.22175 0.98394 0.82732 1.01935 0.89689 0.92779 0.89552 0.90956 0.85218 0.89433 0.90212 0.84604 0.70546 0.86747 0.89794 0.89685 0.89819 0.88704 0.87708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.01 8.78 127.77 1.12 3.13 16 2 N -0.48 -22.50 2.59 -658.89 -1.70 -24.21 16 3 C -0.34 -19.40 9.37 84.04 0.79 -18.61 16 4 H 0.05 3.46 7.90 -2.91 -0.02 3.44 16 5 C 0.01 0.82 5.29 84.93 0.45 1.27 16 6 N -0.91 -53.58 13.96 21.66 0.30 -53.28 16 7 Si 0.95 42.29 24.96 68.60 1.71 44.00 16 8 H -0.24 -9.15 6.69 99.48 0.67 -8.48 16 9 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 10 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 11 C 0.46 20.06 7.63 87.66 0.67 20.73 16 12 O -0.61 -31.65 15.85 -3.06 -0.05 -31.70 16 13 C -0.13 -3.74 4.64 29.85 0.14 -3.60 16 14 C 0.13 3.32 5.16 86.38 0.45 3.77 16 15 N -0.41 -8.51 2.78 -520.13 -1.44 -9.95 16 16 C 0.30 4.05 12.49 180.25 2.25 6.30 16 17 N -0.51 -9.07 11.16 -196.26 -2.19 -11.26 16 18 C 0.32 6.87 7.64 132.82 1.01 7.89 16 19 C -0.18 -4.56 6.90 39.04 0.27 -4.29 16 20 C 0.58 16.85 7.44 84.93 0.63 17.48 16 21 O -0.54 -19.11 16.14 -4.67 -0.08 -19.18 16 22 N -0.55 -13.78 2.96 -806.88 -2.39 -16.17 16 23 C 0.08 1.59 9.99 127.77 1.28 2.86 16 24 C 0.71 16.82 8.12 179.21 1.45 18.27 16 25 O -0.56 -14.32 15.01 -4.03 -0.06 -14.38 16 26 N -0.51 -10.45 3.06 -678.19 -2.07 -12.52 16 27 C 0.09 1.16 10.39 127.77 1.33 2.49 16 28 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 29 H 0.05 2.05 3.42 -2.39 -0.01 2.04 16 30 H 0.09 2.45 6.64 -2.39 -0.02 2.44 16 31 H 0.28 15.18 8.31 -92.70 -0.77 14.41 16 32 H 0.13 2.64 8.11 -2.39 -0.02 2.62 16 33 H 0.09 2.61 7.41 -2.39 -0.02 2.60 16 34 H 0.08 2.59 7.46 -2.39 -0.02 2.57 16 35 H 0.14 2.78 8.09 -2.39 -0.02 2.76 16 36 H 0.28 0.71 8.06 -2.91 -0.02 0.68 16 37 H 0.11 1.99 6.80 -2.39 -0.02 1.97 16 38 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 40 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.09 1.21 7.38 -2.39 -0.02 1.19 16 42 H 0.10 1.11 8.01 -2.39 -0.02 1.10 16 Total: -1.00 -83.64 353.36 4.90 -78.74 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: 1.03 Total: 12.23 kcal Atomic # 6 Polarization: 45.85 SS G_CDS: 11.84 Total: 57.68 kcal Atomic # 7 Polarization: -117.89 SS G_CDS: -9.50 Total: -127.38 kcal Atomic # 8 Polarization: -65.08 SS G_CDS: -0.18 Total: -65.26 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 1.71 Total: 44.00 kcal Total: -83.64 4.90 -78.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330386761.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.282 kcal (2) G-P(sol) polarization free energy of solvation -83.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds