Wall clock time and date at job start Tue Mar 31 2020 18:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47317 * 2 1 4 4 C 1.50703 * 109.46915 * 120.00081 * 2 1 3 5 5 H 1.07997 * 120.00287 * 120.00292 * 4 2 1 6 6 C 1.37876 * 120.00058 * 299.99547 * 4 2 1 7 7 N 1.31511 * 120.00556 * 180.02562 * 6 4 2 8 8 Si 1.86805 * 120.00044 * 0.02562 * 6 4 2 9 9 H 1.48505 * 109.47167 * 89.99520 * 8 6 4 10 10 H 1.48497 * 109.47413 * 209.99845 * 8 6 4 11 11 H 1.48501 * 109.47061 * 330.00045 * 8 6 4 12 12 N 1.46501 * 109.47178 * 239.99458 * 2 1 3 13 13 C 1.34778 * 119.99386 * 85.00414 * 12 2 1 14 14 O 1.21284 * 120.00428 * 359.97438 * 13 12 2 15 15 C 1.50701 * 119.99869 * 180.02562 * 13 12 2 16 16 N 1.46501 * 109.47406 * 179.97438 * 15 13 12 17 17 C 1.34723 * 126.50421 * 264.69089 * 16 15 13 18 18 N 1.30872 * 109.71129 * 180.26051 * 17 16 15 19 19 C 1.33541 * 109.80529 * 0.02562 * 18 17 16 20 20 C 1.38055 * 126.50266 * 84.99879 * 16 15 13 21 21 C 1.41156 * 134.58888 * 359.73770 * 20 16 15 22 22 O 1.21789 * 120.39105 * 0.02562 * 21 20 16 23 23 N 1.34936 * 119.21989 * 179.97438 * 21 20 16 24 24 C 1.46501 * 119.50220 * 179.97438 * 23 21 20 25 25 C 1.34415 * 120.99428 * 0.02562 * 23 21 20 26 26 O 1.21600 * 119.16661 * 179.97438 * 25 23 21 27 27 N 1.34638 * 121.66408 * 359.97438 * 25 23 21 28 28 C 1.46497 * 119.94776 * 180.02562 * 27 25 23 29 29 H 1.09002 * 109.47317 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47026 * 299.99926 * 1 2 3 31 31 H 1.09004 * 109.47085 * 59.99692 * 1 2 3 32 32 H 0.96996 * 120.00825 * 180.02562 * 7 6 4 33 33 H 0.96997 * 120.00458 * 265.00426 * 12 2 1 34 34 H 1.08999 * 109.47204 * 59.99481 * 15 13 12 35 35 H 1.09004 * 109.46906 * 300.00161 * 15 13 12 36 36 H 1.08001 * 125.14957 * 0.20876 * 17 16 15 37 37 H 1.09006 * 109.46878 * 90.00297 * 24 23 21 38 38 H 1.08992 * 109.47488 * 210.00213 * 24 23 21 39 39 H 1.09003 * 109.47426 * 330.00762 * 24 23 21 40 40 H 1.08992 * 109.47390 * 0.02562 * 28 27 25 41 41 H 1.09009 * 109.47012 * 120.00713 * 28 27 25 42 42 H 1.09001 * 109.47057 * 240.00164 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2394 2.4828 7 7 2.1379 -0.8590 3.5566 8 14 0.6248 1.2791 2.6542 9 1 -0.8029 0.8728 2.6998 10 1 0.9759 1.9952 3.9068 11 1 0.8471 2.1765 1.4920 12 7 2.0183 -0.6907 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8582 1.1583 -2.4117 15 6 2.6489 -0.7289 -3.5877 16 7 2.6978 0.2123 -4.7093 17 6 1.7459 0.3939 -5.6452 18 7 2.1318 1.3113 -6.4951 19 6 3.3412 1.7636 -6.1544 20 6 3.7306 1.0772 -5.0111 21 6 4.9848 1.3639 -4.4304 22 8 5.3490 0.7749 -3.4285 23 7 5.7759 2.2976 -4.9988 24 6 7.0786 2.6004 -4.4009 25 6 5.3864 2.9546 -6.1048 26 8 6.1256 3.7899 -6.5892 27 7 4.1984 2.7113 -6.6899 28 6 3.8119 3.4493 -7.8950 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.9034 -0.5278 4.4376 33 1 2.2490 -1.6319 -1.1525 34 1 1.9760 -1.5507 -3.8325 35 1 3.6480 -1.1215 -3.3985 36 1 0.8067 -0.1377 -5.6882 37 1 7.8380 1.9506 -4.8361 38 1 7.3354 3.6413 -4.5972 39 1 7.0319 2.4344 -3.3246 40 1 4.6064 4.1445 -8.1658 41 1 3.6484 2.7482 -8.7136 42 1 2.8934 4.0037 -7.7026 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338077732.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:14 Heat of formation + Delta-G solvation = 6.181444 kcal Electronic energy + Delta-G solvation = -29548.312537 eV Core-core repulsion = 25338.586507 eV Total energy + Delta-G solvation = -4209.726030 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.22763 -41.31794 -39.31495 -39.10430 -36.57979 -35.45092 -35.22114 -33.91250 -32.52322 -31.02938 -30.28082 -28.04371 -27.73880 -26.87348 -25.27326 -24.01633 -23.40957 -22.02739 -21.22395 -19.96674 -19.54887 -18.63366 -17.87628 -17.45577 -17.25318 -16.37396 -16.24514 -15.94133 -15.58608 -15.40143 -15.17580 -14.99769 -14.87330 -14.55012 -14.24068 -13.90075 -13.45375 -13.13744 -13.11629 -13.06541 -12.65456 -12.52782 -12.51898 -12.30114 -11.92032 -11.38025 -11.32889 -11.17416 -10.90509 -10.73336 -10.28649 -10.27733 -10.14452 -9.90582 -9.76594 -9.35256 -9.33725 -8.84676 -8.36457 -8.29810 -6.27555 -4.31011 0.73573 1.47688 1.80023 2.21339 2.45107 2.65925 2.86278 3.17292 3.28860 3.30683 3.34142 3.63673 3.82295 4.22830 4.25133 4.34052 4.50204 4.90652 4.92191 4.99924 5.07002 5.09265 5.12978 5.18861 5.20640 5.35321 5.46764 5.51822 5.59276 5.82404 6.18970 6.21425 6.23902 6.43208 6.57225 6.72728 6.99142 7.02568 7.11774 7.29741 7.32494 7.39577 7.74524 7.96343 8.36128 8.58811 8.72999 9.32103 10.84483 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.017280 B = 0.003228 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.016718 B = 8671.196257 C = 9326.324392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.239 3.761 3 H 0.049 0.951 4 C -0.538 4.538 5 H 0.082 0.918 6 C 0.080 3.920 7 N -0.890 5.890 8 Si 0.885 3.115 9 H -0.275 1.275 10 H -0.293 1.293 11 H -0.263 1.263 12 N -0.691 5.691 13 C 0.492 3.508 14 O -0.539 6.539 15 C 0.079 3.921 16 N -0.389 5.389 17 C 0.274 3.726 18 N -0.498 5.498 19 C 0.310 3.690 20 C -0.134 4.134 21 C 0.592 3.408 22 O -0.501 6.501 23 N -0.553 5.553 24 C 0.085 3.915 25 C 0.710 3.290 26 O -0.543 6.543 27 N -0.511 5.511 28 C 0.089 3.911 29 H 0.055 0.945 30 H 0.049 0.951 31 H 0.035 0.965 32 H 0.268 0.732 33 H 0.398 0.602 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.229 0.771 37 H 0.075 0.925 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.100 0.900 41 H 0.077 0.923 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.286 1.031 -22.083 22.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.136 3.864 3 H 0.066 0.934 4 C -0.575 4.575 5 H 0.100 0.900 6 C -0.124 4.124 7 N -0.526 5.526 8 Si 0.714 3.286 9 H -0.202 1.202 10 H -0.220 1.220 11 H -0.188 1.188 12 N -0.340 5.340 13 C 0.275 3.725 14 O -0.417 6.417 15 C -0.046 4.046 16 N -0.069 5.069 17 C -0.009 4.009 18 N -0.221 5.221 19 C 0.079 3.921 20 C -0.251 4.251 21 C 0.385 3.615 22 O -0.376 6.376 23 N -0.297 5.297 24 C -0.056 4.056 25 C 0.413 3.587 26 O -0.417 6.417 27 N -0.239 5.239 28 C -0.052 4.052 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.078 0.922 33 H 0.232 0.768 34 H 0.149 0.851 35 H 0.149 0.851 36 H 0.245 0.755 37 H 0.093 0.907 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.119 0.881 41 H 0.096 0.904 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.329 2.225 -22.129 22.362 hybrid contribution -0.306 -0.077 1.057 1.103 sum 2.023 2.148 -21.072 21.278 Atomic orbital electron populations 1.22452 0.99068 1.00947 0.99432 1.19146 0.90182 0.94684 0.82424 0.93372 1.21000 1.33534 1.14587 0.88420 0.90040 1.24816 0.95464 0.96633 0.95505 1.69853 1.44641 1.40048 0.98088 0.86891 0.80509 0.83608 0.77574 1.20213 1.22000 1.18791 1.46100 1.64572 1.13949 1.09342 1.20291 0.79420 0.87906 0.84897 1.90740 1.50707 1.15467 1.84749 1.22064 1.07008 0.90950 0.84614 1.44219 1.12975 1.28436 1.21299 1.25229 0.94869 0.95927 0.84876 1.69640 1.09747 1.13748 1.28974 1.17985 0.91036 0.91723 0.91394 1.18674 0.96154 1.06661 1.03618 1.15476 0.82887 0.79551 0.83548 1.90931 1.74429 1.48969 1.23253 1.45782 1.20888 1.37052 1.25982 1.21946 0.80057 1.03442 1.00133 1.15416 0.81077 0.81778 0.80433 1.90993 1.51704 1.35066 1.63911 1.43744 1.14504 1.36925 1.28737 1.21958 1.02489 0.96991 0.83806 0.92638 0.93290 0.94612 0.92170 0.76843 0.85101 0.85111 0.75516 0.90684 0.88722 0.88583 0.88135 0.90446 0.90406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.41 8.96 37.16 0.33 -3.07 16 2 C 0.24 5.49 2.15 -69.08 -0.15 5.34 16 3 H 0.05 1.26 6.64 -51.93 -0.34 0.92 16 4 C -0.54 -14.17 9.31 -34.44 -0.32 -14.49 16 5 H 0.08 2.25 7.98 -52.49 -0.42 1.83 16 6 C 0.08 2.21 5.45 -17.82 -0.10 2.11 16 7 N -0.89 -25.99 13.96 55.43 0.77 -25.22 16 8 Si 0.88 21.49 24.37 -169.99 -4.14 17.35 16 9 H -0.28 -6.42 6.87 56.52 0.39 -6.03 16 10 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 11 H -0.26 -6.42 6.53 56.52 0.37 -6.05 16 12 N -0.69 -12.55 5.07 -54.93 -0.28 -12.83 16 13 C 0.49 8.41 7.86 -10.98 -0.09 8.33 16 14 O -0.54 -11.61 16.09 5.55 0.09 -11.53 16 15 C 0.08 0.90 6.35 -5.19 -0.03 0.87 16 16 N -0.39 -4.88 2.26 -117.03 -0.27 -5.15 16 17 C 0.27 2.81 12.49 -90.36 -1.13 1.68 16 18 N -0.50 -6.09 11.20 -13.39 -0.15 -6.24 16 19 C 0.31 4.20 7.69 -154.55 -1.19 3.01 16 20 C -0.13 -1.97 6.90 -83.70 -0.58 -2.55 16 21 C 0.59 9.32 7.44 -15.08 -0.11 9.20 16 22 O -0.50 -8.97 15.72 5.11 0.08 -8.89 16 23 N -0.55 -7.65 2.96 -131.63 -0.39 -8.04 16 24 C 0.08 0.93 10.09 59.85 0.60 1.53 16 25 C 0.71 9.74 8.12 -87.37 -0.71 9.03 16 26 O -0.54 -7.88 15.01 5.28 0.08 -7.80 16 27 N -0.51 -6.44 3.06 -128.31 -0.39 -6.83 16 28 C 0.09 0.80 10.63 59.85 0.64 1.44 16 29 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 33 H 0.40 6.04 8.54 -40.82 -0.35 5.69 16 34 H 0.13 0.80 8.13 -51.93 -0.42 0.38 16 35 H 0.13 1.45 7.51 -51.93 -0.39 1.06 16 36 H 0.23 1.18 8.06 -52.49 -0.42 0.76 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.09 0.94 7.34 -51.93 -0.38 0.56 16 39 H 0.10 1.09 7.40 -51.93 -0.38 0.70 16 40 H 0.10 0.86 6.85 -51.93 -0.36 0.51 16 41 H 0.08 0.58 8.14 -51.92 -0.42 0.15 16 42 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 354.38 15.07 5.34 5.34 Total: -1.00 -37.24 354.38 -7.02 -44.26 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -4.93 Total: 3.16 kcal Atomic # 6 Polarization: 25.24 SS G_CDS: -2.83 Total: 22.41 kcal Atomic # 7 Polarization: -63.61 SS G_CDS: -0.70 Total: -64.31 kcal Atomic # 8 Polarization: -28.46 SS G_CDS: 0.25 Total: -28.21 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.14 Total: 17.35 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -37.24 -7.02 -44.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338077732.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.440 kcal (2) G-P(sol) polarization free energy of solvation -37.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds