Wall clock time and date at job start Tue Mar 31 2020 18:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47317 * 2 1 4 4 C 1.50703 * 109.46915 * 120.00081 * 2 1 3 5 5 H 1.07997 * 120.00287 * 120.00292 * 4 2 1 6 6 C 1.37876 * 120.00058 * 299.99547 * 4 2 1 7 7 N 1.31511 * 120.00556 * 180.02562 * 6 4 2 8 8 Si 1.86805 * 120.00044 * 0.02562 * 6 4 2 9 9 H 1.48505 * 109.47167 * 89.99520 * 8 6 4 10 10 H 1.48497 * 109.47413 * 209.99845 * 8 6 4 11 11 H 1.48501 * 109.47061 * 330.00045 * 8 6 4 12 12 N 1.46501 * 109.47178 * 239.99458 * 2 1 3 13 13 C 1.34778 * 119.99386 * 85.00414 * 12 2 1 14 14 O 1.21284 * 120.00428 * 359.97438 * 13 12 2 15 15 C 1.50701 * 119.99869 * 180.02562 * 13 12 2 16 16 N 1.46501 * 109.47406 * 179.97438 * 15 13 12 17 17 C 1.34723 * 126.50421 * 264.69089 * 16 15 13 18 18 N 1.30872 * 109.71129 * 180.26051 * 17 16 15 19 19 C 1.33541 * 109.80529 * 0.02562 * 18 17 16 20 20 C 1.38055 * 126.50266 * 84.99879 * 16 15 13 21 21 C 1.41156 * 134.58888 * 359.73770 * 20 16 15 22 22 O 1.21789 * 120.39105 * 0.02562 * 21 20 16 23 23 N 1.34936 * 119.21989 * 179.97438 * 21 20 16 24 24 C 1.46501 * 119.50220 * 179.97438 * 23 21 20 25 25 C 1.34415 * 120.99428 * 0.02562 * 23 21 20 26 26 O 1.21600 * 119.16661 * 179.97438 * 25 23 21 27 27 N 1.34638 * 121.66408 * 359.97438 * 25 23 21 28 28 C 1.46497 * 119.94776 * 180.02562 * 27 25 23 29 29 H 1.09002 * 109.47317 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47026 * 299.99926 * 1 2 3 31 31 H 1.09004 * 109.47085 * 59.99692 * 1 2 3 32 32 H 0.96996 * 120.00825 * 180.02562 * 7 6 4 33 33 H 0.96997 * 120.00458 * 265.00426 * 12 2 1 34 34 H 1.08999 * 109.47204 * 59.99481 * 15 13 12 35 35 H 1.09004 * 109.46906 * 300.00161 * 15 13 12 36 36 H 1.08001 * 125.14957 * 0.20876 * 17 16 15 37 37 H 1.09006 * 109.46878 * 90.00297 * 24 23 21 38 38 H 1.08992 * 109.47488 * 210.00213 * 24 23 21 39 39 H 1.09003 * 109.47426 * 330.00762 * 24 23 21 40 40 H 1.08992 * 109.47390 * 0.02562 * 28 27 25 41 41 H 1.09009 * 109.47012 * 120.00713 * 28 27 25 42 42 H 1.09001 * 109.47057 * 240.00164 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2394 2.4828 7 7 2.1379 -0.8590 3.5566 8 14 0.6248 1.2791 2.6542 9 1 -0.8029 0.8728 2.6998 10 1 0.9759 1.9952 3.9068 11 1 0.8471 2.1765 1.4920 12 7 2.0183 -0.6907 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8582 1.1583 -2.4117 15 6 2.6489 -0.7289 -3.5877 16 7 2.6978 0.2123 -4.7093 17 6 1.7459 0.3939 -5.6452 18 7 2.1318 1.3113 -6.4951 19 6 3.3412 1.7636 -6.1544 20 6 3.7306 1.0772 -5.0111 21 6 4.9848 1.3639 -4.4304 22 8 5.3490 0.7749 -3.4285 23 7 5.7759 2.2976 -4.9988 24 6 7.0786 2.6004 -4.4009 25 6 5.3864 2.9546 -6.1048 26 8 6.1256 3.7899 -6.5892 27 7 4.1984 2.7113 -6.6899 28 6 3.8119 3.4493 -7.8950 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.9034 -0.5278 4.4376 33 1 2.2490 -1.6319 -1.1525 34 1 1.9760 -1.5507 -3.8325 35 1 3.6480 -1.1215 -3.3985 36 1 0.8067 -0.1377 -5.6882 37 1 7.8380 1.9506 -4.8361 38 1 7.3354 3.6413 -4.5972 39 1 7.0319 2.4344 -3.3246 40 1 4.6064 4.1445 -8.1658 41 1 3.6484 2.7482 -8.7136 42 1 2.8934 4.0037 -7.7026 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338077732.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:13 Heat of formation + Delta-G solvation = -20.911158 kcal Electronic energy + Delta-G solvation = -29549.487360 eV Core-core repulsion = 25338.586507 eV Total energy + Delta-G solvation = -4210.900853 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.19811 -42.32342 -40.66645 -40.27856 -37.60959 -36.91196 -36.51437 -34.93133 -34.44390 -32.19041 -31.72347 -28.97816 -28.78897 -27.77879 -27.23221 -24.99937 -24.45442 -23.47068 -22.27701 -21.49074 -20.61141 -19.71989 -19.25842 -18.54872 -18.39308 -17.91828 -17.56207 -17.07791 -16.89472 -16.52603 -16.34253 -16.18132 -16.02615 -15.74279 -15.39103 -15.05120 -14.95358 -14.71677 -14.26539 -14.14156 -13.97094 -13.83358 -13.55960 -13.44807 -13.30774 -13.09892 -12.81624 -12.40426 -12.17066 -12.14015 -11.80304 -11.66520 -11.33395 -11.31153 -11.21046 -10.97263 -10.89688 -10.61657 -9.97405 -9.30060 -8.40799 -6.46715 -0.27604 0.53377 0.71681 1.23547 1.29259 1.33275 1.41242 1.55058 1.57593 1.65489 2.22855 2.23740 2.39059 2.87952 2.95621 3.28697 3.58425 3.71745 3.73047 4.06082 4.12798 4.21510 4.27632 4.35082 4.43247 4.47383 4.49578 4.54418 4.63214 4.68357 4.71026 4.78243 4.90450 4.97972 5.23579 5.29162 5.40389 5.56250 5.74315 5.96750 6.09146 6.21111 6.38712 6.55227 6.70819 6.74395 7.14620 7.32858 8.74417 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.017280 B = 0.003228 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.016718 B = 8671.196257 C = 9326.324392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.244 3.756 3 H 0.012 0.988 4 C -0.534 4.534 5 H 0.060 0.940 6 C 0.030 3.970 7 N -0.932 5.932 8 Si 0.937 3.063 9 H -0.254 1.254 10 H -0.295 1.295 11 H -0.269 1.269 12 N -0.691 5.691 13 C 0.491 3.509 14 O -0.586 6.586 15 C 0.093 3.907 16 N -0.400 5.400 17 C 0.299 3.701 18 N -0.510 5.510 19 C 0.314 3.686 20 C -0.172 4.172 21 C 0.585 3.415 22 O -0.539 6.539 23 N -0.556 5.556 24 C 0.081 3.919 25 C 0.706 3.294 26 O -0.555 6.555 27 N -0.511 5.511 28 C 0.085 3.915 29 H 0.073 0.927 30 H 0.037 0.963 31 H 0.049 0.951 32 H 0.270 0.730 33 H 0.413 0.587 34 H 0.196 0.804 35 H 0.133 0.867 36 H 0.281 0.719 37 H 0.093 0.907 38 H 0.103 0.897 39 H 0.087 0.913 40 H 0.102 0.898 41 H 0.096 0.904 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.354 0.392 -24.471 24.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.139 3.861 3 H 0.030 0.970 4 C -0.572 4.572 5 H 0.078 0.922 6 C -0.170 4.170 7 N -0.571 5.571 8 Si 0.765 3.235 9 H -0.179 1.179 10 H -0.222 1.222 11 H -0.194 1.194 12 N -0.340 5.340 13 C 0.276 3.724 14 O -0.467 6.467 15 C -0.032 4.032 16 N -0.080 5.080 17 C 0.017 3.983 18 N -0.234 5.234 19 C 0.082 3.918 20 C -0.289 4.289 21 C 0.380 3.620 22 O -0.417 6.417 23 N -0.299 5.299 24 C -0.059 4.059 25 C 0.409 3.591 26 O -0.430 6.430 27 N -0.239 5.239 28 C -0.055 4.055 29 H 0.092 0.908 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.249 0.751 34 H 0.213 0.787 35 H 0.151 0.849 36 H 0.297 0.703 37 H 0.111 0.889 38 H 0.121 0.879 39 H 0.106 0.894 40 H 0.121 0.879 41 H 0.114 0.886 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.404 1.574 -24.573 24.627 hybrid contribution 0.323 0.122 1.694 1.729 sum 0.727 1.697 -22.880 22.954 Atomic orbital electron populations 1.22308 0.97108 1.02146 0.99474 1.18729 0.91596 0.92672 0.83077 0.96989 1.21270 1.32395 1.13677 0.89884 0.92214 1.25533 0.96879 0.99150 0.95443 1.69963 1.46577 1.41892 0.98669 0.86037 0.80151 0.80385 0.76918 1.17941 1.22220 1.19399 1.45873 1.64891 1.14625 1.08646 1.21216 0.77881 0.87409 0.85870 1.90718 1.52563 1.17732 1.85675 1.22147 1.08330 0.91062 0.81618 1.44381 1.12975 1.28696 1.21976 1.26432 0.95146 0.94052 0.82688 1.69727 1.09052 1.14717 1.29910 1.18204 0.91406 0.91238 0.90949 1.18814 0.96726 1.08610 1.04717 1.15775 0.83506 0.79445 0.83232 1.90894 1.75353 1.50573 1.24835 1.45924 1.21432 1.36586 1.25986 1.22096 0.79651 1.04427 0.99713 1.15503 0.81481 0.81710 0.80393 1.90979 1.52197 1.35572 1.64262 1.43974 1.13986 1.36677 1.29219 1.22190 1.02857 0.97367 0.83065 0.90819 0.94477 0.93233 0.92031 0.75067 0.78706 0.84910 0.70335 0.88857 0.87859 0.89432 0.87893 0.88575 0.89578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.15 8.96 71.98 0.65 -5.50 16 2 C 0.24 11.12 2.15 44.25 0.10 11.21 16 3 H 0.01 0.65 6.64 -2.39 -0.02 0.63 16 4 C -0.53 -28.42 9.31 25.60 0.24 -28.18 16 5 H 0.06 3.36 7.98 -2.91 -0.02 3.34 16 6 C 0.03 1.67 5.45 84.65 0.46 2.13 16 7 N -0.93 -55.36 13.96 21.45 0.30 -55.06 16 8 Si 0.94 44.45 24.37 68.60 1.67 46.12 16 9 H -0.25 -11.10 6.87 99.48 0.68 -10.41 16 10 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 11 H -0.27 -12.89 6.53 99.48 0.65 -12.25 16 12 N -0.69 -24.16 5.07 -446.09 -2.26 -26.42 16 13 C 0.49 15.90 7.86 87.66 0.69 16.59 16 14 O -0.59 -24.79 16.09 -3.04 -0.05 -24.84 16 15 C 0.09 1.80 6.35 85.63 0.54 2.35 16 16 N -0.40 -8.89 2.26 -524.18 -1.19 -10.07 16 17 C 0.30 4.87 12.49 180.26 2.25 7.12 16 18 N -0.51 -10.94 11.20 -196.27 -2.20 -13.14 16 19 C 0.31 8.01 7.69 132.82 1.02 9.03 16 20 C -0.17 -4.90 6.90 39.04 0.27 -4.63 16 21 C 0.58 18.62 7.44 84.93 0.63 19.25 16 22 O -0.54 -19.82 15.72 -4.63 -0.07 -19.89 16 23 N -0.56 -15.57 2.96 -806.90 -2.39 -17.95 16 24 C 0.08 1.82 10.09 127.77 1.29 3.11 16 25 C 0.71 19.15 8.12 179.21 1.45 20.61 16 26 O -0.56 -15.88 15.01 -4.03 -0.06 -15.94 16 27 N -0.51 -12.32 3.06 -678.21 -2.07 -14.40 16 28 C 0.09 1.39 10.63 127.77 1.36 2.75 16 29 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 30 H 0.04 1.58 3.27 -2.39 -0.01 1.57 16 31 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 32 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 33 H 0.41 11.83 8.54 -92.71 -0.79 11.04 16 34 H 0.20 1.21 8.13 -2.39 -0.02 1.19 16 35 H 0.13 2.65 7.51 -2.38 -0.02 2.63 16 36 H 0.28 1.10 8.06 -2.91 -0.02 1.07 16 37 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 38 H 0.10 2.09 7.34 -2.39 -0.02 2.07 16 39 H 0.09 2.10 7.40 -2.39 -0.02 2.08 16 40 H 0.10 1.64 6.85 -2.39 -0.02 1.62 16 41 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 42 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -84.34 354.38 2.85 -81.49 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 0.22 Total: 14.30 kcal Atomic # 6 Polarization: 44.86 SS G_CDS: 10.95 Total: 55.81 kcal Atomic # 7 Polarization: -127.24 SS G_CDS: -9.81 Total: -137.05 kcal Atomic # 8 Polarization: -60.49 SS G_CDS: -0.18 Total: -60.68 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.67 Total: 46.12 kcal Total: -84.34 2.85 -81.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338077732.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.576 kcal (2) G-P(sol) polarization free energy of solvation -84.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds