Wall clock time and date at job start Tue Mar 31 2020 18:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.38549 * 119.95308 * 2 1 4 4 N 1.33549 * 133.90359 * 0.02562 * 3 2 1 5 5 C 1.30868 * 109.80955 * 180.02562 * 4 3 2 6 6 N 1.34737 * 109.70987 * 0.02562 * 5 4 3 7 7 C 1.46500 * 126.50449 * 180.02562 * 6 5 4 8 8 C 1.50700 * 109.47035 * 264.97221 * 7 6 5 9 9 O 1.21283 * 119.99888 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00289 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00092 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.47020 * 179.97438 * 11 10 8 13 13 C 1.50700 * 109.47217 * 180.02562 * 12 11 10 14 14 H 1.07991 * 120.00189 * 0.02562 * 13 12 11 15 15 C 1.37886 * 119.99938 * 180.02562 * 13 12 11 16 16 N 1.31512 * 119.99753 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47317 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47225 * 120.00278 * 17 15 13 20 20 H 1.48511 * 109.46802 * 239.99850 * 17 15 13 21 21 C 1.38060 * 106.98788 * 359.78273 * 6 5 4 22 22 C 1.41155 * 134.58321 * 179.53117 * 21 6 5 23 23 O 1.21803 * 120.38633 * 0.63852 * 22 21 6 24 24 N 1.34928 * 119.22459 * 180.36445 * 22 21 6 25 25 C 1.46502 * 119.50759 * 180.24803 * 24 22 21 26 26 C 1.34413 * 120.98992 * 0.27610 * 24 22 21 27 27 O 1.21600 * 119.17219 * 179.97438 * 26 24 22 28 28 H 1.08998 * 109.47485 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47450 * 299.98453 * 1 2 3 30 30 H 1.09006 * 109.47008 * 59.97570 * 1 2 3 31 31 H 1.07996 * 125.14903 * 179.97438 * 5 4 3 32 32 H 1.08996 * 109.47485 * 24.97238 * 7 6 5 33 33 H 1.09003 * 109.47073 * 144.97846 * 7 6 5 34 34 H 0.97001 * 119.99577 * 0.02562 * 10 8 7 35 35 H 1.08996 * 109.47405 * 299.99643 * 11 10 8 36 36 H 1.08997 * 109.46965 * 60.00673 * 11 10 8 37 37 H 1.09000 * 109.47408 * 300.00772 * 12 11 10 38 38 H 1.09009 * 109.46797 * 60.00308 * 12 11 10 39 39 H 0.96998 * 119.99628 * 180.02562 * 16 15 13 40 40 H 1.08993 * 109.46894 * 89.99957 * 25 24 22 41 41 H 1.08992 * 109.47381 * 210.00581 * 25 24 22 42 42 H 1.09004 * 109.46975 * 330.00543 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1567 1.2004 0.0000 4 7 1.7854 2.4833 0.0004 5 6 2.8448 3.2516 -0.0004 6 7 3.9573 2.4916 -0.0019 7 6 5.3412 2.9724 -0.0027 8 6 5.8554 3.0208 -1.4184 9 8 5.1368 2.6861 -2.3363 10 7 7.1141 3.4350 -1.6645 11 6 7.6141 3.4815 -3.0407 12 6 9.0593 3.9837 -3.0415 13 6 9.5735 4.0322 -4.4573 14 1 8.9334 3.7349 -5.2747 15 6 10.8613 4.4560 -4.7089 16 7 11.6409 4.8175 -3.7134 17 14 11.4983 4.5167 -6.4638 18 1 10.4332 4.0616 -7.3931 19 1 11.8882 5.9093 -6.8010 20 1 12.6803 3.6268 -6.5924 21 6 3.5457 1.1738 0.0029 22 6 4.2098 -0.0717 -0.0041 23 8 5.4268 -0.1210 -0.0058 24 7 3.4806 -1.2070 -0.0033 25 6 4.1635 -2.5032 -0.0051 26 6 2.1371 -1.1667 -0.0015 27 8 1.5128 -2.2102 -0.0012 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5136 0.8901 30 1 -0.3633 0.5142 -0.8898 31 1 2.8296 4.3315 -0.0006 32 1 5.3791 3.9712 0.4320 33 1 5.9611 2.2961 0.5860 34 1 7.6892 3.7016 -0.9302 35 1 7.5760 2.4825 -3.4751 36 1 6.9946 4.1578 -3.6296 37 1 9.0971 4.9827 -2.6072 38 1 9.6792 3.3077 -2.4524 39 1 12.5466 5.1160 -3.8905 40 1 4.3347 -2.8250 1.0221 41 1 3.5447 -3.2392 -0.5181 42 1 5.1194 -2.4095 -0.5205 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342626921.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:15 Heat of formation + Delta-G solvation = -8.911944 kcal Electronic energy + Delta-G solvation = -28755.077239 eV Core-core repulsion = 24544.696711 eV Total energy + Delta-G solvation = -4210.380528 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.32390 -41.41260 -39.45813 -39.21957 -36.65563 -35.53136 -35.09601 -34.04865 -32.95951 -31.10618 -30.09147 -28.15538 -27.95889 -26.96916 -24.76261 -24.09476 -23.43478 -21.74061 -21.16887 -20.67283 -19.61156 -18.68792 -17.78536 -17.50886 -17.20079 -16.53454 -16.31861 -16.01650 -15.62223 -15.37066 -15.30458 -15.10388 -14.92394 -14.62638 -14.48396 -14.01994 -13.62628 -13.60777 -13.26881 -13.15183 -12.69731 -12.60178 -12.46892 -12.36784 -11.43348 -11.30308 -11.27154 -11.11220 -10.82716 -10.69540 -10.45293 -10.38515 -10.26704 -10.03995 -9.85593 -9.57847 -9.29818 -8.72559 -8.46891 -8.39886 -6.16090 -4.19121 0.62932 1.38423 1.71136 2.10426 2.35292 2.56427 2.62463 3.19225 3.24248 3.31758 3.35428 3.42306 3.71793 4.12885 4.24845 4.35839 4.37630 4.72840 4.78807 4.84740 5.00339 5.06917 5.10087 5.12538 5.21401 5.26502 5.41266 5.42375 5.49740 5.73177 6.12073 6.17076 6.21770 6.47878 6.59227 6.68725 6.90260 7.19942 7.23505 7.40985 7.51525 7.65345 7.72112 7.82032 8.17140 8.34368 8.86756 9.46255 10.95498 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.019651 B = 0.002418 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.528639 B =11577.872628 C =12212.783829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.511 5.511 3 C 0.313 3.687 4 N -0.497 5.497 5 C 0.277 3.723 6 N -0.392 5.392 7 C 0.080 3.920 8 C 0.494 3.506 9 O -0.534 6.534 10 N -0.712 5.712 11 C 0.123 3.877 12 C 0.013 3.987 13 C -0.523 4.523 14 H 0.060 0.940 15 C 0.059 3.941 16 N -0.893 5.893 17 Si 0.897 3.103 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.283 1.283 21 C -0.136 4.136 22 C 0.593 3.407 23 O -0.506 6.506 24 N -0.552 5.552 25 C 0.085 3.915 26 C 0.710 3.290 27 O -0.542 6.542 28 H 0.101 0.899 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.230 0.770 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.400 0.600 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.023 0.977 38 H 0.024 0.976 39 H 0.262 0.738 40 H 0.075 0.925 41 H 0.095 0.905 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.359 -6.011 14.194 24.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.239 5.239 3 C 0.081 3.919 4 N -0.220 5.220 5 C -0.006 4.006 6 N -0.072 5.072 7 C -0.045 4.045 8 C 0.277 3.723 9 O -0.410 6.410 10 N -0.362 5.362 11 C 0.001 3.999 12 C -0.025 4.025 13 C -0.561 4.561 14 H 0.078 0.922 15 C -0.143 4.143 16 N -0.532 5.532 17 Si 0.725 3.275 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.254 4.254 22 C 0.387 3.613 23 O -0.381 6.381 24 N -0.297 5.297 25 C -0.056 4.056 26 C 0.413 3.587 27 O -0.415 6.415 28 H 0.119 0.881 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.246 0.754 32 H 0.151 0.849 33 H 0.150 0.850 34 H 0.234 0.766 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.042 0.958 38 H 0.042 0.958 39 H 0.072 0.928 40 H 0.094 0.906 41 H 0.113 0.887 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -20.015 -6.575 13.538 25.042 hybrid contribution 1.605 0.205 -0.635 1.738 sum -18.410 -6.370 12.903 23.366 Atomic orbital electron populations 1.21973 0.74419 1.05243 1.03665 1.43762 1.08761 1.00916 1.70418 1.17997 0.86869 0.87371 0.99617 1.69656 1.29186 0.98364 1.24808 1.25277 0.78168 0.99020 0.98162 1.44210 1.07726 1.03801 1.51497 1.22027 0.80046 1.04092 0.98359 1.20351 0.83226 0.78716 0.90025 1.90762 1.56790 1.47996 1.45495 1.46230 1.12609 1.65564 1.11833 1.21797 0.97975 1.01069 0.79044 1.19336 0.88013 0.96751 0.98360 1.21064 0.98125 1.44734 0.92210 0.92206 1.24995 0.96793 0.95006 0.97461 1.69956 1.08016 1.44310 1.30929 0.86450 0.78915 0.77731 0.84450 1.19579 1.20877 1.20872 1.18673 0.93411 0.86956 1.26316 1.15459 0.86859 0.82319 0.76646 1.90914 1.12266 1.87090 1.47789 1.45777 1.05859 1.09913 1.68115 1.21949 0.98622 0.80946 1.04065 1.15419 0.81453 0.83417 0.78445 1.91000 1.65810 1.29288 1.55409 0.88089 0.90383 0.90346 0.75409 0.84870 0.85000 0.76575 0.92388 0.92316 0.95839 0.95804 0.92826 0.90644 0.88672 0.88625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.73 10.63 59.84 0.64 1.36 16 2 N -0.51 -5.96 3.06 -128.31 -0.39 -6.36 16 3 C 0.31 3.93 7.69 -154.55 -1.19 2.74 16 4 N -0.50 -5.63 11.20 -13.39 -0.15 -5.78 16 5 C 0.28 2.55 12.49 -90.35 -1.13 1.42 16 6 N -0.39 -4.42 2.26 -117.03 -0.27 -4.69 16 7 C 0.08 0.79 6.35 -5.19 -0.03 0.75 16 8 C 0.49 7.44 7.90 -10.98 -0.09 7.36 16 9 O -0.53 -10.46 16.43 5.55 0.09 -10.37 16 10 N -0.71 -11.11 5.56 -60.30 -0.33 -11.45 16 11 C 0.12 2.49 5.61 -4.04 -0.02 2.47 16 12 C 0.01 0.31 5.09 -27.88 -0.14 0.16 16 13 C -0.52 -14.19 9.11 -34.44 -0.31 -14.50 16 14 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.89 -25.57 13.29 55.43 0.74 -24.83 16 17 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 18 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 C -0.14 -1.85 6.90 -83.70 -0.58 -2.43 16 22 C 0.59 8.58 7.44 -15.08 -0.11 8.46 16 23 O -0.51 -8.27 15.71 5.10 0.08 -8.19 16 24 N -0.55 -7.05 2.96 -131.63 -0.39 -7.44 16 25 C 0.08 0.84 10.09 59.85 0.60 1.44 16 26 C 0.71 9.07 8.12 -87.36 -0.71 8.36 16 27 O -0.54 -7.42 15.01 5.28 0.08 -7.34 16 28 H 0.10 0.80 6.85 -51.93 -0.36 0.44 16 29 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.23 0.97 8.06 -52.49 -0.42 0.55 16 32 H 0.13 0.64 8.13 -51.93 -0.42 0.22 16 33 H 0.13 1.25 7.50 -51.93 -0.39 0.86 16 34 H 0.40 5.08 8.47 -40.82 -0.35 4.73 16 35 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.02 0.59 8.14 -51.92 -0.42 0.17 16 39 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.09 0.86 7.34 -51.93 -0.38 0.48 16 42 H 0.10 0.97 7.40 -51.93 -0.38 0.58 16 LS Contribution 366.00 15.07 5.52 5.52 Total: -1.00 -37.30 366.00 -8.42 -45.72 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -5.20 Total: -0.02 kcal Atomic # 6 Polarization: 22.32 SS G_CDS: -3.17 Total: 19.15 kcal Atomic # 7 Polarization: -59.75 SS G_CDS: -0.80 Total: -60.54 kcal Atomic # 8 Polarization: -26.14 SS G_CDS: 0.25 Total: -25.89 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -37.30 -8.42 -45.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342626921.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.811 kcal (2) G-P(sol) polarization free energy of solvation -37.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds