Wall clock time and date at job start Tue Mar 31 2020 18:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.38549 * 119.95308 * 2 1 4 4 N 1.33549 * 133.90359 * 0.02562 * 3 2 1 5 5 C 1.30868 * 109.80955 * 180.02562 * 4 3 2 6 6 N 1.34737 * 109.70987 * 0.02562 * 5 4 3 7 7 C 1.46500 * 126.50449 * 180.02562 * 6 5 4 8 8 C 1.50700 * 109.47035 * 264.97221 * 7 6 5 9 9 O 1.21283 * 119.99888 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00289 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00092 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.47020 * 179.97438 * 11 10 8 13 13 C 1.50700 * 109.47217 * 180.02562 * 12 11 10 14 14 H 1.07991 * 120.00189 * 0.02562 * 13 12 11 15 15 C 1.37886 * 119.99938 * 180.02562 * 13 12 11 16 16 N 1.31512 * 119.99753 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47317 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47225 * 120.00278 * 17 15 13 20 20 H 1.48511 * 109.46802 * 239.99850 * 17 15 13 21 21 C 1.38060 * 106.98788 * 359.78273 * 6 5 4 22 22 C 1.41155 * 134.58321 * 179.53117 * 21 6 5 23 23 O 1.21803 * 120.38633 * 0.63852 * 22 21 6 24 24 N 1.34928 * 119.22459 * 180.36445 * 22 21 6 25 25 C 1.46502 * 119.50759 * 180.24803 * 24 22 21 26 26 C 1.34413 * 120.98992 * 0.27610 * 24 22 21 27 27 O 1.21600 * 119.17219 * 179.97438 * 26 24 22 28 28 H 1.08998 * 109.47485 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47450 * 299.98453 * 1 2 3 30 30 H 1.09006 * 109.47008 * 59.97570 * 1 2 3 31 31 H 1.07996 * 125.14903 * 179.97438 * 5 4 3 32 32 H 1.08996 * 109.47485 * 24.97238 * 7 6 5 33 33 H 1.09003 * 109.47073 * 144.97846 * 7 6 5 34 34 H 0.97001 * 119.99577 * 0.02562 * 10 8 7 35 35 H 1.08996 * 109.47405 * 299.99643 * 11 10 8 36 36 H 1.08997 * 109.46965 * 60.00673 * 11 10 8 37 37 H 1.09000 * 109.47408 * 300.00772 * 12 11 10 38 38 H 1.09009 * 109.46797 * 60.00308 * 12 11 10 39 39 H 0.96998 * 119.99628 * 180.02562 * 16 15 13 40 40 H 1.08993 * 109.46894 * 89.99957 * 25 24 22 41 41 H 1.08992 * 109.47381 * 210.00581 * 25 24 22 42 42 H 1.09004 * 109.46975 * 330.00543 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1567 1.2004 0.0000 4 7 1.7854 2.4833 0.0004 5 6 2.8448 3.2516 -0.0004 6 7 3.9573 2.4916 -0.0019 7 6 5.3412 2.9724 -0.0027 8 6 5.8554 3.0208 -1.4184 9 8 5.1368 2.6861 -2.3363 10 7 7.1141 3.4350 -1.6645 11 6 7.6141 3.4815 -3.0407 12 6 9.0593 3.9837 -3.0415 13 6 9.5735 4.0322 -4.4573 14 1 8.9334 3.7349 -5.2747 15 6 10.8613 4.4560 -4.7089 16 7 11.6409 4.8175 -3.7134 17 14 11.4983 4.5167 -6.4638 18 1 10.4332 4.0616 -7.3931 19 1 11.8882 5.9093 -6.8010 20 1 12.6803 3.6268 -6.5924 21 6 3.5457 1.1738 0.0029 22 6 4.2098 -0.0717 -0.0041 23 8 5.4268 -0.1210 -0.0058 24 7 3.4806 -1.2070 -0.0033 25 6 4.1635 -2.5032 -0.0051 26 6 2.1371 -1.1667 -0.0015 27 8 1.5128 -2.2102 -0.0012 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5136 0.8901 30 1 -0.3633 0.5142 -0.8898 31 1 2.8296 4.3315 -0.0006 32 1 5.3791 3.9712 0.4320 33 1 5.9611 2.2961 0.5860 34 1 7.6892 3.7016 -0.9302 35 1 7.5760 2.4825 -3.4751 36 1 6.9946 4.1578 -3.6296 37 1 9.0971 4.9827 -2.6072 38 1 9.6792 3.3077 -2.4524 39 1 12.5466 5.1160 -3.8905 40 1 4.3347 -2.8250 1.0221 41 1 3.5447 -3.2392 -0.5181 42 1 5.1194 -2.4095 -0.5205 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342626921.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:14 Heat of formation + Delta-G solvation = -34.420297 kcal Electronic energy + Delta-G solvation = -28756.183365 eV Core-core repulsion = 24544.696711 eV Total energy + Delta-G solvation = -4211.486654 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.20868 -42.33351 -40.68068 -40.28023 -37.59003 -36.68652 -36.51445 -34.98117 -34.83538 -32.08638 -31.65597 -29.15607 -28.90369 -27.79967 -26.55112 -24.99831 -24.38939 -23.13606 -22.43577 -21.85902 -20.55764 -19.61643 -18.89105 -18.52583 -18.46613 -18.11544 -17.36492 -16.98691 -16.70507 -16.52790 -16.51326 -16.38406 -16.05333 -15.96075 -15.44231 -15.14966 -14.90210 -14.78244 -14.32873 -14.24396 -13.97120 -13.54737 -13.42893 -13.29714 -13.24594 -12.96327 -12.55720 -12.41331 -12.27355 -12.17129 -11.81093 -11.71365 -11.47912 -11.33628 -11.22319 -11.00064 -10.65398 -10.62682 -10.11421 -9.31099 -8.26344 -6.36198 -0.29279 0.52426 0.71041 1.26517 1.39056 1.40969 1.46181 1.53135 1.54578 1.64732 2.21019 2.25520 2.42787 2.86663 3.08819 3.27613 3.55240 3.65543 3.70102 4.05189 4.11123 4.21462 4.27180 4.35533 4.44364 4.45262 4.47171 4.49241 4.63171 4.70048 4.78396 4.82258 4.89592 5.20876 5.22869 5.44965 5.56885 5.72052 5.77100 5.96228 6.14249 6.19794 6.37965 6.49249 6.70145 6.76995 7.13508 7.33205 8.85464 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.019651 B = 0.002418 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.528639 B =11577.872628 C =12212.783829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.511 5.511 3 C 0.314 3.686 4 N -0.511 5.511 5 C 0.300 3.700 6 N -0.401 5.401 7 C 0.093 3.907 8 C 0.493 3.507 9 O -0.582 6.582 10 N -0.707 5.707 11 C 0.144 3.856 12 C 0.023 3.977 13 C -0.547 4.547 14 H 0.055 0.945 15 C 0.009 3.991 16 N -0.924 5.924 17 Si 0.962 3.038 18 H -0.268 1.268 19 H -0.274 1.274 20 H -0.278 1.278 21 C -0.172 4.172 22 C 0.586 3.414 23 O -0.538 6.538 24 N -0.555 5.555 25 C 0.081 3.919 26 C 0.706 3.294 27 O -0.555 6.555 28 H 0.102 0.898 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.281 0.719 32 H 0.196 0.804 33 H 0.137 0.863 34 H 0.416 0.584 35 H 0.036 0.964 36 H 0.051 0.949 37 H 0.017 0.983 38 H 0.007 0.993 39 H 0.266 0.734 40 H 0.092 0.908 41 H 0.102 0.898 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.378 -4.635 14.909 25.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.238 5.238 3 C 0.082 3.918 4 N -0.235 5.235 5 C 0.017 3.983 6 N -0.082 5.082 7 C -0.032 4.032 8 C 0.279 3.721 9 O -0.462 6.462 10 N -0.358 5.358 11 C 0.020 3.980 12 C -0.014 4.014 13 C -0.586 4.586 14 H 0.074 0.926 15 C -0.190 4.190 16 N -0.564 5.564 17 Si 0.787 3.213 18 H -0.192 1.192 19 H -0.200 1.200 20 H -0.204 1.204 21 C -0.288 4.288 22 C 0.382 3.618 23 O -0.416 6.416 24 N -0.299 5.299 25 C -0.059 4.059 26 C 0.409 3.591 27 O -0.430 6.430 28 H 0.121 0.879 29 H 0.114 0.886 30 H 0.104 0.896 31 H 0.296 0.704 32 H 0.213 0.787 33 H 0.155 0.845 34 H 0.253 0.747 35 H 0.054 0.946 36 H 0.070 0.930 37 H 0.035 0.965 38 H 0.026 0.974 39 H 0.075 0.925 40 H 0.111 0.889 41 H 0.121 0.879 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -21.060 -5.207 14.292 25.979 hybrid contribution 1.837 -0.200 -0.841 2.030 sum -19.223 -5.407 13.451 24.077 Atomic orbital electron populations 1.22188 0.72626 1.05792 1.04910 1.43977 1.09883 1.00520 1.69449 1.18219 0.86737 0.88006 0.98812 1.69730 1.30146 0.97766 1.25858 1.26436 0.76896 1.00671 0.94283 1.44384 1.08600 1.03137 1.52088 1.22159 0.79382 1.07530 0.94128 1.21245 0.82092 0.76743 0.92005 1.90742 1.57917 1.49796 1.47757 1.45978 1.13539 1.65960 1.10371 1.21195 0.95884 0.99248 0.81689 1.19132 0.89769 0.95953 0.96550 1.21483 0.98622 1.44776 0.93708 0.92647 1.25821 0.97046 0.94585 1.01538 1.70044 1.08445 1.44970 1.32900 0.85444 0.78263 0.78052 0.79585 1.19212 1.19980 1.20368 1.18813 0.93980 0.87716 1.28298 1.15729 0.86674 0.83101 0.76271 1.90879 1.13320 1.87555 1.49879 1.45917 1.06061 1.10407 1.67494 1.22102 0.98297 0.80229 1.05264 1.15510 0.81385 0.83698 0.78517 1.90984 1.65988 1.29772 1.56279 0.87894 0.88621 0.89579 0.70417 0.78735 0.84478 0.74684 0.94591 0.93029 0.96504 0.97427 0.92493 0.88918 0.87939 0.89208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.29 10.63 127.77 1.36 2.65 16 2 N -0.51 -11.55 3.06 -678.20 -2.07 -13.62 16 3 C 0.31 7.49 7.69 132.82 1.02 8.52 16 4 N -0.51 -10.29 11.20 -196.26 -2.20 -12.49 16 5 C 0.30 4.43 12.49 180.25 2.25 6.69 16 6 N -0.40 -8.05 2.26 -524.18 -1.19 -9.24 16 7 C 0.09 1.53 6.35 85.63 0.54 2.07 16 8 C 0.49 14.19 7.90 87.66 0.69 14.88 16 9 O -0.58 -22.64 16.43 -3.04 -0.05 -22.69 16 10 N -0.71 -21.44 5.56 -463.07 -2.57 -24.01 16 11 C 0.14 5.89 5.61 86.38 0.48 6.37 16 12 C 0.02 1.13 5.09 29.85 0.15 1.28 16 13 C -0.55 -30.06 9.11 25.60 0.23 -29.82 16 14 H 0.06 3.01 7.74 -2.92 -0.02 2.99 16 15 C 0.01 0.50 5.46 84.66 0.46 0.97 16 16 N -0.92 -53.03 13.29 21.45 0.28 -52.74 16 17 Si 0.96 43.14 29.54 68.60 2.03 45.16 16 18 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 19 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 20 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 21 C -0.17 -4.50 6.90 39.04 0.27 -4.23 16 22 C 0.59 17.14 7.44 84.93 0.63 17.77 16 23 O -0.54 -17.99 15.71 -4.68 -0.07 -18.07 16 24 N -0.56 -14.36 2.96 -806.91 -2.39 -16.75 16 25 C 0.08 1.64 10.09 127.77 1.29 2.93 16 26 C 0.71 17.97 8.12 179.21 1.45 19.42 16 27 O -0.56 -15.12 15.01 -4.03 -0.06 -15.18 16 28 H 0.10 1.53 6.85 -2.39 -0.02 1.52 16 29 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 31 H 0.28 0.78 8.06 -2.91 -0.02 0.76 16 32 H 0.20 0.78 8.13 -2.39 -0.02 0.76 16 33 H 0.14 2.26 7.50 -2.39 -0.02 2.25 16 34 H 0.42 9.94 8.47 -92.71 -0.79 9.15 16 35 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.01 0.38 8.14 -2.38 -0.02 0.36 16 39 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 40 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.10 1.88 7.34 -2.39 -0.02 1.86 16 42 H 0.09 1.91 7.40 -2.39 -0.02 1.89 16 Total: -1.00 -83.27 366.00 2.85 -80.42 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: 0.29 Total: 9.71 kcal Atomic # 6 Polarization: 38.65 SS G_CDS: 10.84 Total: 49.49 kcal Atomic # 7 Polarization: -118.72 SS G_CDS: -10.13 Total: -128.85 kcal Atomic # 8 Polarization: -55.75 SS G_CDS: -0.18 Total: -55.93 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.16 kcal Total: -83.27 2.85 -80.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342626921.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.001 kcal (2) G-P(sol) polarization free energy of solvation -83.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds