Wall clock time and date at job start Tue Mar 31 2020 18:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47119 * 2 1 4 4 C 1.46496 * 119.99758 * 269.99758 * 3 2 1 5 5 C 1.50700 * 109.47204 * 269.99979 * 4 3 2 6 6 H 1.07995 * 120.00156 * 0.02562 * 5 4 3 7 7 C 1.37876 * 119.99884 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99979 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 120.00366 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.47036 * 89.99686 * 9 7 5 11 11 H 1.48499 * 109.47584 * 209.99828 * 9 7 5 12 12 H 1.48497 * 109.47121 * 330.00280 * 9 7 5 13 13 C 1.34780 * 120.00085 * 90.00114 * 3 2 1 14 14 O 1.21585 * 119.99855 * 179.97438 * 13 3 2 15 15 N 1.34771 * 119.99785 * 359.97438 * 13 3 2 16 16 C 1.40074 * 119.99756 * 185.62408 * 15 13 3 17 17 C 1.38722 * 120.03628 * 24.78835 * 16 15 13 18 18 C 1.38728 * 119.87492 * 180.02562 * 17 16 15 19 19 C 1.38912 * 119.97281 * 359.97438 * 18 17 16 20 20 C 1.38166 * 120.09501 * 0.04000 * 19 18 17 21 21 C 1.38330 * 120.10038 * 359.94450 * 20 19 18 22 22 F 1.35096 * 119.98744 * 180.02562 * 21 20 19 23 23 C 1.50690 * 119.80594 * 179.97438 * 19 18 17 24 24 C 1.52900 * 109.51650 * 325.98423 * 23 19 18 25 25 C 1.50469 * 109.91063 * 48.69172 * 24 23 19 26 26 O 1.21288 * 119.62433 * 144.78068 * 25 24 23 27 27 N 1.34558 * 120.75700 * 324.77245 * 25 24 23 28 28 H 1.08995 * 109.47387 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47059 * 300.00340 * 1 2 3 30 30 H 1.09000 * 109.46964 * 60.00150 * 1 2 3 31 31 H 1.09000 * 109.47059 * 239.99660 * 2 1 3 32 32 H 1.09000 * 109.46964 * 119.99850 * 2 1 3 33 33 H 1.09002 * 109.47200 * 30.00332 * 4 3 2 34 34 H 1.09005 * 109.47084 * 150.00261 * 4 3 2 35 35 H 0.97001 * 119.99976 * 179.97438 * 8 7 5 36 36 H 0.96999 * 120.00613 * 5.63030 * 15 13 3 37 37 H 1.07999 * 120.06178 * 0.05109 * 17 16 15 38 38 H 1.07994 * 119.94952 * 179.97438 * 20 19 18 39 39 H 1.09000 * 109.46205 * 86.00185 * 23 19 18 40 40 H 1.09001 * 109.45788 * 205.97833 * 23 19 18 41 41 H 1.09001 * 109.39770 * 168.80702 * 24 23 19 42 42 H 1.08991 * 109.40218 * 288.54559 * 24 23 19 43 43 H 0.97006 * 119.77586 * 180.73725 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8349 -1.7037 6 1 4.3426 1.2302 -1.0961 7 6 4.1491 2.3895 -2.8779 8 7 5.3910 2.1824 -3.2578 9 14 3.0128 3.4350 -3.9293 10 1 3.1163 4.8553 -3.5083 11 1 3.4057 3.3118 -5.3561 12 1 1.6131 2.9691 -3.7593 13 6 2.2430 2.0166 1.1672 14 8 2.6487 3.1628 1.1672 15 7 2.0179 1.3814 2.3344 16 6 2.1376 2.0767 3.5445 17 6 1.9744 3.4540 3.5731 18 6 2.0942 4.1392 4.7733 19 6 2.3766 3.4456 5.9433 20 6 2.5392 2.0738 5.9134 21 6 2.4202 1.3870 4.7185 22 9 2.5791 0.0457 4.6920 23 6 2.5065 4.1938 7.2449 24 6 3.1190 5.5702 6.9839 25 6 2.3991 6.2442 5.8474 26 8 2.2382 7.4462 5.8684 27 7 1.9320 5.5288 4.8079 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.5817 1.6876 -2.0284 34 1 2.0956 3.1410 -1.1384 35 1 5.7169 2.5723 -4.0841 36 1 1.7731 0.4428 2.3365 37 1 1.7541 3.9917 2.6628 38 1 2.7591 1.5370 6.8243 39 1 1.5210 4.3140 7.6946 40 1 3.1494 3.6330 7.9234 41 1 3.0305 6.1820 7.8817 42 1 4.1722 5.4553 6.7280 43 1 1.4794 5.9793 4.0777 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000429255209.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:14 Heat of formation + Delta-G solvation = -74.774422 kcal Electronic energy + Delta-G solvation = -28967.965217 eV Core-core repulsion = 24734.808716 eV Total energy + Delta-G solvation = -4233.156501 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.91480 -41.19844 -40.19895 -38.57134 -36.18211 -35.39655 -34.42734 -33.54064 -32.62191 -30.49853 -29.82981 -29.04742 -27.50348 -24.82694 -23.49691 -23.15259 -23.01863 -22.31538 -19.92398 -19.35390 -18.69968 -17.47276 -17.44601 -16.98653 -16.93565 -16.43938 -16.18219 -15.62152 -15.48941 -15.03181 -14.90315 -14.28023 -14.13392 -14.06487 -13.88929 -13.73900 -13.60601 -13.35574 -13.09744 -12.82259 -12.64537 -12.41884 -12.21406 -12.01119 -11.74874 -11.57316 -11.50838 -11.13339 -10.96765 -10.84133 -10.56866 -10.28692 -10.22431 -10.01634 -9.62782 -9.48621 -8.63954 -8.46607 -8.02303 -7.72907 -6.13434 -4.13060 0.85307 1.05778 2.30036 2.72560 2.92868 3.25358 3.30249 3.30967 3.33495 3.73114 3.98257 4.11942 4.21170 4.34572 4.37645 4.41938 4.72188 4.88244 5.01894 5.07060 5.14434 5.19017 5.33593 5.38021 5.42002 5.45482 5.53035 5.60634 5.78950 5.83523 5.90110 6.01770 6.15313 6.22189 6.26851 6.44351 6.50950 6.76074 6.82194 7.02216 7.09118 7.30193 7.54027 7.79254 8.24620 8.40778 8.87724 8.93747 9.45841 10.99895 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012464 B = 0.003412 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.984144 B = 8203.307406 C = 9584.650788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.104 3.896 3 N -0.597 5.597 4 C 0.231 3.769 5 C -0.533 4.533 6 H 0.075 0.925 7 C 0.074 3.926 8 N -0.895 5.895 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.266 1.266 13 C 0.702 3.298 14 O -0.563 6.563 15 N -0.686 5.686 16 C 0.190 3.810 17 C -0.141 4.141 18 C 0.174 3.826 19 C -0.132 4.132 20 C -0.092 4.092 21 C 0.035 3.965 22 F -0.139 7.139 23 C -0.070 4.070 24 C -0.139 4.139 25 C 0.523 3.477 26 O -0.531 6.531 27 N -0.658 5.658 28 H 0.064 0.936 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.092 0.908 32 H 0.061 0.939 33 H 0.034 0.966 34 H 0.039 0.961 35 H 0.265 0.735 36 H 0.408 0.592 37 H 0.167 0.833 38 H 0.144 0.856 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.109 0.891 42 H 0.106 0.894 43 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.323 -3.103 19.990 22.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.020 4.020 3 N -0.331 5.331 4 C 0.111 3.889 5 C -0.571 4.571 6 H 0.093 0.907 7 C -0.129 4.129 8 N -0.534 5.534 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.191 1.191 13 C 0.404 3.596 14 O -0.440 6.440 15 N -0.334 5.334 16 C 0.090 3.910 17 C -0.165 4.165 18 C 0.077 3.923 19 C -0.136 4.136 20 C -0.112 4.112 21 C 0.012 3.988 22 F -0.118 7.118 23 C -0.107 4.107 24 C -0.179 4.179 25 C 0.311 3.689 26 O -0.407 6.407 27 N -0.302 5.302 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.110 0.890 32 H 0.080 0.920 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.246 0.754 37 H 0.184 0.816 38 H 0.161 0.839 39 H 0.101 0.899 40 H 0.110 0.890 41 H 0.127 0.873 42 H 0.124 0.876 43 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -9.890 -1.652 19.840 22.230 hybrid contribution -0.571 -0.256 -1.187 1.342 sum -10.461 -1.909 18.653 21.471 Atomic orbital electron populations 1.22252 0.96372 1.01863 1.02490 1.21454 0.93667 0.83742 1.03122 1.47300 1.66677 1.13573 1.05549 1.19641 0.97451 0.93192 0.78666 1.21327 0.95334 1.33195 1.07248 0.90740 1.24845 0.94999 0.95752 0.97310 1.69894 1.15136 1.44817 1.23514 0.86861 0.81371 0.81633 0.79854 1.19862 1.21021 1.19057 1.15833 0.78867 0.84912 0.79986 1.90859 1.51043 1.16718 1.85335 1.42916 1.72633 1.14446 1.03419 1.17257 0.98030 0.91531 0.84179 1.20996 1.04845 0.92651 0.97991 1.17410 0.99021 0.82743 0.93158 1.19171 1.07480 0.93004 0.93913 1.20483 1.01091 0.93057 0.96574 1.17197 1.10218 0.77652 0.93782 1.91465 1.93791 1.29329 1.97188 1.20353 1.02323 0.93667 0.94334 1.21699 1.01546 0.97134 0.97521 1.20744 0.77951 0.86964 0.83218 1.90782 1.56612 1.14506 1.78839 1.43608 1.57025 1.05676 1.23882 0.91700 0.92972 0.91875 0.88997 0.92032 0.94852 0.94351 0.92487 0.75370 0.81617 0.83863 0.89885 0.88976 0.87302 0.87624 0.74758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.98 10.24 37.16 0.38 -1.60 16 2 C 0.10 1.51 5.94 -4.04 -0.02 1.48 16 3 N -0.60 -11.58 2.46 -180.80 -0.44 -12.03 16 4 C 0.23 5.38 4.23 -5.20 -0.02 5.36 16 5 C -0.53 -14.89 9.94 -34.44 -0.34 -15.23 16 6 H 0.07 2.31 8.06 -52.49 -0.42 1.89 16 7 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 8 N -0.90 -27.26 13.96 55.43 0.77 -26.48 16 9 Si 0.88 21.05 27.47 -169.99 -4.67 16.38 16 10 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.27 -5.94 6.54 56.52 0.37 -5.57 16 13 C 0.70 13.71 8.08 -86.92 -0.70 13.00 16 14 O -0.56 -12.96 13.09 5.29 0.07 -12.89 16 15 N -0.69 -10.43 5.19 -14.18 -0.07 -10.50 16 16 C 0.19 2.70 6.44 -83.60 -0.54 2.16 16 17 C -0.14 -2.02 8.59 -39.22 -0.34 -2.35 16 18 C 0.17 2.07 6.50 -83.72 -0.54 1.52 16 19 C -0.13 -1.27 5.66 -104.40 -0.59 -1.86 16 20 C -0.09 -0.88 9.66 -39.57 -0.38 -1.26 16 21 C 0.03 0.42 7.30 -39.24 -0.29 0.13 16 22 F -0.14 -1.70 16.80 2.25 0.04 -1.66 16 23 C -0.07 -0.46 6.00 -27.94 -0.17 -0.63 16 24 C -0.14 -1.10 6.07 -28.05 -0.17 -1.27 16 25 C 0.52 6.18 7.72 -11.20 -0.09 6.09 16 26 O -0.53 -8.14 17.91 5.55 0.10 -8.04 16 27 N -0.66 -7.65 5.37 -10.00 -0.05 -7.70 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.09 1.39 8.07 -51.93 -0.42 0.97 16 32 H 0.06 0.75 6.29 -51.93 -0.33 0.42 16 33 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16 34 H 0.04 0.95 6.85 -51.93 -0.36 0.60 16 35 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 36 H 0.41 5.18 6.14 -40.82 -0.25 4.93 16 37 H 0.17 2.72 5.79 -52.49 -0.30 2.41 16 38 H 0.14 0.96 8.06 -52.49 -0.42 0.53 16 39 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.09 0.41 8.06 -51.93 -0.42 -0.01 16 41 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.41 4.62 8.83 -40.82 -0.36 4.26 16 LS Contribution 361.26 15.07 5.44 5.44 Total: -1.00 -35.05 361.26 -8.08 -43.14 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -5.35 Total: 6.80 kcal Atomic # 6 Polarization: 11.46 SS G_CDS: -3.91 Total: 7.55 kcal Atomic # 7 Polarization: -56.92 SS G_CDS: 0.20 Total: -56.72 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: 0.17 Total: -20.94 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.67 Total: 16.38 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.05 -8.08 -43.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429255209.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.639 kcal (2) G-P(sol) polarization free energy of solvation -35.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds