Wall clock time and date at job start Tue Mar 31 2020 18:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47119 * 2 1 4 4 C 1.46496 * 119.99758 * 269.99758 * 3 2 1 5 5 C 1.50700 * 109.47204 * 269.99979 * 4 3 2 6 6 H 1.07995 * 120.00156 * 0.02562 * 5 4 3 7 7 C 1.37876 * 119.99884 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99979 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 120.00366 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.47036 * 89.99686 * 9 7 5 11 11 H 1.48499 * 109.47584 * 209.99828 * 9 7 5 12 12 H 1.48497 * 109.47121 * 330.00280 * 9 7 5 13 13 C 1.34780 * 120.00085 * 90.00114 * 3 2 1 14 14 O 1.21585 * 119.99855 * 179.97438 * 13 3 2 15 15 N 1.34771 * 119.99785 * 359.97438 * 13 3 2 16 16 C 1.40074 * 119.99756 * 185.62408 * 15 13 3 17 17 C 1.38722 * 120.03628 * 24.78835 * 16 15 13 18 18 C 1.38728 * 119.87492 * 180.02562 * 17 16 15 19 19 C 1.38912 * 119.97281 * 359.97438 * 18 17 16 20 20 C 1.38166 * 120.09501 * 0.04000 * 19 18 17 21 21 C 1.38330 * 120.10038 * 359.94450 * 20 19 18 22 22 F 1.35096 * 119.98744 * 180.02562 * 21 20 19 23 23 C 1.50690 * 119.80594 * 179.97438 * 19 18 17 24 24 C 1.52900 * 109.51650 * 325.98423 * 23 19 18 25 25 C 1.50469 * 109.91063 * 48.69172 * 24 23 19 26 26 O 1.21288 * 119.62433 * 144.78068 * 25 24 23 27 27 N 1.34558 * 120.75700 * 324.77245 * 25 24 23 28 28 H 1.08995 * 109.47387 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47059 * 300.00340 * 1 2 3 30 30 H 1.09000 * 109.46964 * 60.00150 * 1 2 3 31 31 H 1.09000 * 109.47059 * 239.99660 * 2 1 3 32 32 H 1.09000 * 109.46964 * 119.99850 * 2 1 3 33 33 H 1.09002 * 109.47200 * 30.00332 * 4 3 2 34 34 H 1.09005 * 109.47084 * 150.00261 * 4 3 2 35 35 H 0.97001 * 119.99976 * 179.97438 * 8 7 5 36 36 H 0.96999 * 120.00613 * 5.63030 * 15 13 3 37 37 H 1.07999 * 120.06178 * 0.05109 * 17 16 15 38 38 H 1.07994 * 119.94952 * 179.97438 * 20 19 18 39 39 H 1.09000 * 109.46205 * 86.00185 * 23 19 18 40 40 H 1.09001 * 109.45788 * 205.97833 * 23 19 18 41 41 H 1.09001 * 109.39770 * 168.80702 * 24 23 19 42 42 H 1.08991 * 109.40218 * 288.54559 * 24 23 19 43 43 H 0.97006 * 119.77586 * 180.73725 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8349 -1.7037 6 1 4.3426 1.2302 -1.0961 7 6 4.1491 2.3895 -2.8779 8 7 5.3910 2.1824 -3.2578 9 14 3.0128 3.4350 -3.9293 10 1 3.1163 4.8553 -3.5083 11 1 3.4057 3.3118 -5.3561 12 1 1.6131 2.9691 -3.7593 13 6 2.2430 2.0166 1.1672 14 8 2.6487 3.1628 1.1672 15 7 2.0179 1.3814 2.3344 16 6 2.1376 2.0767 3.5445 17 6 1.9744 3.4540 3.5731 18 6 2.0942 4.1392 4.7733 19 6 2.3766 3.4456 5.9433 20 6 2.5392 2.0738 5.9134 21 6 2.4202 1.3870 4.7185 22 9 2.5791 0.0457 4.6920 23 6 2.5065 4.1938 7.2449 24 6 3.1190 5.5702 6.9839 25 6 2.3991 6.2442 5.8474 26 8 2.2382 7.4462 5.8684 27 7 1.9320 5.5288 4.8079 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.5817 1.6876 -2.0284 34 1 2.0956 3.1410 -1.1384 35 1 5.7169 2.5723 -4.0841 36 1 1.7731 0.4428 2.3365 37 1 1.7541 3.9917 2.6628 38 1 2.7591 1.5370 6.8243 39 1 1.5210 4.3140 7.6946 40 1 3.1494 3.6330 7.9234 41 1 3.0305 6.1820 7.8817 42 1 4.1722 5.4553 6.7280 43 1 1.4794 5.9793 4.0777 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000429255209.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:13 Heat of formation + Delta-G solvation = -99.250833 kcal Electronic energy + Delta-G solvation = -28969.026594 eV Core-core repulsion = 24734.808716 eV Total energy + Delta-G solvation = -4234.217878 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.86645 -42.19268 -41.48334 -39.62957 -37.47210 -36.74429 -35.42810 -34.89291 -34.23083 -31.91688 -30.83491 -30.15638 -29.05785 -25.79259 -24.60257 -24.46511 -24.07127 -23.63552 -21.14805 -20.46566 -19.83480 -19.13228 -18.61906 -18.44429 -17.83249 -17.57930 -17.26026 -16.73194 -16.47259 -16.46686 -16.25449 -15.79915 -15.36275 -15.07968 -14.95692 -14.83541 -14.60928 -14.41807 -14.34128 -14.02229 -13.90206 -13.62835 -13.46544 -13.22874 -12.98154 -12.68308 -12.56556 -12.45952 -12.34255 -12.07493 -12.05251 -11.91096 -11.74643 -11.23852 -11.01854 -10.96105 -10.83876 -9.67369 -9.38002 -8.80474 -8.34796 -6.40230 -0.09635 0.12664 1.31736 1.36706 1.38163 1.43736 1.49983 1.94180 2.05341 2.29996 2.59894 2.81005 3.00384 3.13022 3.37280 3.60097 3.71860 3.96793 4.00434 4.15135 4.25154 4.30059 4.35176 4.44525 4.52821 4.68995 4.75747 4.83053 4.90643 4.91249 4.92363 4.94365 5.00480 5.07109 5.23221 5.29175 5.31613 5.43667 5.51575 5.57636 5.78177 5.84846 6.11941 6.23638 6.61289 6.84831 6.86758 7.20852 7.44855 8.82279 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012464 B = 0.003412 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.984144 B = 8203.307406 C = 9584.650788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.097 3.903 3 N -0.606 5.606 4 C 0.242 3.758 5 C -0.537 4.537 6 H 0.027 0.973 7 C 0.012 3.988 8 N -0.946 5.946 9 Si 0.947 3.053 10 H -0.278 1.278 11 H -0.276 1.276 12 H -0.234 1.234 13 C 0.697 3.303 14 O -0.609 6.609 15 N -0.672 5.672 16 C 0.158 3.842 17 C -0.159 4.159 18 C 0.166 3.834 19 C -0.116 4.116 20 C -0.076 4.076 21 C 0.036 3.964 22 F -0.139 7.139 23 C -0.065 4.065 24 C -0.135 4.135 25 C 0.516 3.484 26 O -0.575 6.575 27 N -0.661 5.661 28 H 0.097 0.903 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.056 0.944 34 H 0.023 0.977 35 H 0.268 0.732 36 H 0.420 0.580 37 H 0.135 0.865 38 H 0.187 0.813 39 H 0.100 0.900 40 H 0.131 0.869 41 H 0.130 0.870 42 H 0.115 0.885 43 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.963 -4.237 22.756 26.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.026 4.026 3 N -0.340 5.340 4 C 0.120 3.880 5 C -0.576 4.576 6 H 0.045 0.955 7 C -0.186 4.186 8 N -0.586 5.586 9 Si 0.770 3.230 10 H -0.203 1.203 11 H -0.201 1.201 12 H -0.157 1.157 13 C 0.399 3.601 14 O -0.489 6.489 15 N -0.322 5.322 16 C 0.060 3.940 17 C -0.183 4.183 18 C 0.069 3.931 19 C -0.120 4.120 20 C -0.095 4.095 21 C 0.012 3.988 22 F -0.117 7.117 23 C -0.101 4.101 24 C -0.174 4.174 25 C 0.307 3.693 26 O -0.454 6.454 27 N -0.304 5.304 28 H 0.116 0.884 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.074 0.926 34 H 0.041 0.959 35 H 0.077 0.923 36 H 0.260 0.740 37 H 0.153 0.847 38 H 0.204 0.796 39 H 0.119 0.881 40 H 0.149 0.851 41 H 0.148 0.852 42 H 0.133 0.867 43 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -11.566 -2.872 22.662 25.605 hybrid contribution 0.007 0.057 -1.909 1.909 sum -11.559 -2.815 20.754 23.922 Atomic orbital electron populations 1.22164 0.93604 1.03879 1.02192 1.21766 0.95863 0.81096 1.03839 1.47276 1.66996 1.15302 1.04394 1.19274 0.94816 0.92939 0.80982 1.21571 0.97152 1.32182 1.06702 0.95502 1.25836 0.96690 0.97148 0.98925 1.70053 1.17502 1.46556 1.24451 0.85727 0.80597 0.78936 0.77745 1.20330 1.20120 1.15739 1.16018 0.78513 0.84540 0.81000 1.90830 1.53003 1.18791 1.86231 1.42572 1.72250 1.14733 1.02599 1.17481 1.00402 0.91743 0.84399 1.20779 1.06500 0.93009 0.97977 1.17525 0.99444 0.82692 0.93423 1.19612 1.04687 0.93279 0.94373 1.20921 0.98815 0.92855 0.96900 1.17347 1.09926 0.77690 0.93790 1.91469 1.93770 1.29297 1.97200 1.20523 1.04149 0.92549 0.92897 1.21814 1.01333 0.97902 0.96360 1.21623 0.77313 0.86599 0.83771 1.90758 1.58423 1.16427 1.79786 1.43738 1.56785 1.05861 1.23990 0.88430 0.92604 0.92832 0.89893 0.89787 0.92648 0.95936 0.92281 0.74020 0.84714 0.79628 0.88144 0.85059 0.85158 0.86709 0.75326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.40 10.24 71.98 0.74 -2.66 16 2 C 0.10 2.74 5.94 86.38 0.51 3.25 16 3 N -0.61 -24.08 2.46 -844.20 -2.07 -26.15 16 4 C 0.24 11.52 4.23 85.63 0.36 11.88 16 5 C -0.54 -31.35 9.94 25.60 0.25 -31.10 16 6 H 0.03 1.77 8.06 -2.91 -0.02 1.74 16 7 C 0.01 0.71 5.47 84.65 0.46 1.17 16 8 N -0.95 -59.78 13.96 21.45 0.30 -59.49 16 9 Si 0.95 43.97 27.47 68.60 1.88 45.86 16 10 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 11 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 12 H -0.23 -9.61 6.54 99.48 0.65 -8.96 16 13 C 0.70 28.36 8.08 179.06 1.45 29.80 16 14 O -0.61 -29.84 13.09 -3.98 -0.05 -29.89 16 15 N -0.67 -20.75 5.19 -317.04 -1.65 -22.39 16 16 C 0.16 4.50 6.44 38.14 0.25 4.75 16 17 C -0.16 -4.73 8.59 22.50 0.19 -4.53 16 18 C 0.17 3.86 6.50 38.12 0.25 4.11 16 19 C -0.12 -1.85 5.66 -19.72 -0.11 -1.97 16 20 C -0.08 -1.13 9.66 22.27 0.22 -0.92 16 21 C 0.04 0.79 7.30 22.49 0.16 0.95 16 22 F -0.14 -3.05 16.80 44.97 0.76 -2.29 16 23 C -0.06 -0.54 6.00 29.81 0.18 -0.36 16 24 C -0.13 -1.68 6.07 29.74 0.18 -1.50 16 25 C 0.52 11.83 7.72 87.62 0.68 12.51 16 26 O -0.57 -17.78 17.91 -3.05 -0.05 -17.83 16 27 N -0.66 -15.61 5.37 -304.07 -1.63 -17.24 16 28 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.08 2.50 8.07 -2.39 -0.02 2.48 16 32 H 0.08 1.96 6.29 -2.39 -0.02 1.95 16 33 H 0.06 2.39 7.13 -2.39 -0.02 2.37 16 34 H 0.02 1.15 6.85 -2.38 -0.02 1.13 16 35 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 36 H 0.42 10.43 6.14 -92.71 -0.57 9.86 16 37 H 0.14 4.86 5.79 -2.91 -0.02 4.85 16 38 H 0.19 1.27 8.06 -2.91 -0.02 1.25 16 39 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.13 0.23 8.06 -2.39 -0.02 0.21 16 41 H 0.13 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.41 9.92 8.83 -92.70 -0.82 9.10 16 Total: -1.00 -83.14 361.26 2.89 -80.25 By element: Atomic # 1 Polarization: 24.16 SS G_CDS: -0.36 Total: 23.80 kcal Atomic # 6 Polarization: 19.61 SS G_CDS: 5.77 Total: 25.38 kcal Atomic # 7 Polarization: -120.22 SS G_CDS: -5.05 Total: -125.27 kcal Atomic # 8 Polarization: -47.62 SS G_CDS: -0.11 Total: -47.73 kcal Atomic # 9 Polarization: -3.05 SS G_CDS: 0.76 Total: -2.29 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 1.88 Total: 45.86 kcal Total: -83.14 2.89 -80.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429255209.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.999 kcal (2) G-P(sol) polarization free energy of solvation -83.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds