Wall clock time and date at job start Tue Mar 31 2020 18:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.47432 * 2 1 4 4 C 1.50698 * 109.47331 * 120.00217 * 2 1 3 5 5 H 1.07995 * 120.00357 * 119.99605 * 4 2 1 6 6 C 1.37882 * 119.99845 * 300.00016 * 4 2 1 7 7 N 1.31519 * 119.99941 * 179.97438 * 6 4 2 8 8 Si 1.86798 * 119.99844 * 359.97438 * 6 4 2 9 9 H 1.48506 * 109.46957 * 90.00053 * 8 6 4 10 10 H 1.48503 * 109.47030 * 209.99720 * 8 6 4 11 11 H 1.48499 * 109.47309 * 329.99731 * 8 6 4 12 12 N 1.46504 * 109.47411 * 240.00120 * 2 1 3 13 13 C 1.46502 * 119.99646 * 300.00217 * 12 2 1 14 14 C 1.34773 * 120.00332 * 119.99639 * 12 2 1 15 15 O 1.21585 * 119.99791 * 0.02562 * 14 12 2 16 16 N 1.34769 * 119.99978 * 180.02562 * 14 12 2 17 17 C 1.40081 * 119.99791 * 184.44363 * 16 14 12 18 18 C 1.38713 * 120.03864 * 325.32775 * 17 16 14 19 19 C 1.38727 * 119.87693 * 179.97438 * 18 17 16 20 20 C 1.38913 * 119.96915 * 359.97438 * 19 18 17 21 21 C 1.38159 * 120.09979 * 0.02562 * 20 19 18 22 22 C 1.38334 * 120.09467 * 359.97438 * 21 20 19 23 23 F 1.35106 * 119.98040 * 179.97438 * 22 21 20 24 24 C 1.50689 * 119.80642 * 179.97438 * 20 19 18 25 25 C 1.52904 * 109.51593 * 325.98802 * 24 20 19 26 26 C 1.50472 * 109.91645 * 48.68463 * 25 24 20 27 27 O 1.21284 * 119.62135 * 144.78040 * 26 25 24 28 28 N 1.34560 * 120.75305 * 324.78287 * 26 25 24 29 29 H 1.09008 * 109.47152 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47306 * 299.99611 * 1 2 3 31 31 H 1.09004 * 109.47276 * 60.00100 * 1 2 3 32 32 H 0.96999 * 119.99548 * 180.02562 * 7 6 4 33 33 H 1.09002 * 109.47062 * 269.99841 * 13 12 2 34 34 H 1.09002 * 109.47293 * 29.99568 * 13 12 2 35 35 H 1.09001 * 109.47112 * 150.00024 * 13 12 2 36 36 H 0.96993 * 120.00635 * 4.44043 * 16 14 12 37 37 H 1.07995 * 120.06111 * 0.02562 * 18 17 16 38 38 H 1.07996 * 119.95757 * 180.02562 * 21 20 19 39 39 H 1.08998 * 109.46570 * 85.99462 * 24 20 19 40 40 H 1.08996 * 109.46405 * 205.97973 * 24 20 19 41 41 H 1.09001 * 109.40058 * 168.80857 * 25 24 20 42 42 H 1.09005 * 109.39970 * 288.54222 * 25 24 20 43 43 H 0.97001 * 119.77415 * 180.72718 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 2.1373 -0.8597 3.5565 8 14 0.6259 1.2798 2.6541 9 1 -0.8021 0.8744 2.6993 10 1 0.9772 1.9953 3.9071 11 1 0.8492 2.1773 1.4923 12 7 2.0184 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4280 14 6 2.7932 -0.0356 -2.0834 15 8 3.0872 1.1283 -1.8907 16 7 3.2420 -0.6708 -3.1840 17 6 4.1223 -0.0202 -4.0580 18 6 4.0061 1.3455 -4.2714 19 6 4.8800 1.9865 -5.1374 20 6 5.8694 1.2603 -5.7881 21 6 5.9842 -0.0999 -5.5747 22 6 5.1145 -0.7425 -4.7120 23 9 5.2285 -2.0728 -4.5055 24 6 6.8164 1.9602 -6.7284 25 6 6.0817 3.0957 -7.4417 26 6 5.3317 3.9304 -6.4392 27 8 5.2357 5.1276 -6.6082 28 7 4.7665 3.3638 -5.3575 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.9026 -0.5285 4.4375 33 1 2.4157 -2.7377 -0.9717 34 1 0.6904 -2.3002 -0.9846 35 1 1.6238 -2.2852 -2.5002 36 1 2.9556 -1.5784 -3.3709 37 1 3.2372 1.9088 -3.7638 38 1 6.7544 -0.6622 -6.0816 39 1 7.6540 2.3684 -6.1629 40 1 7.1882 1.2486 -7.4656 41 1 6.8042 3.7216 -7.9655 42 1 5.3789 2.6762 -8.1617 43 1 4.2773 3.9139 -4.7258 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000444390155.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:03 Heat of formation + Delta-G solvation = -66.167571 kcal Electronic energy + Delta-G solvation = -28936.626227 eV Core-core repulsion = 24703.842946 eV Total energy + Delta-G solvation = -4232.783280 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.93437 -41.24631 -40.20240 -38.64003 -36.35674 -35.36113 -34.47159 -33.71968 -32.62948 -30.58278 -29.67060 -28.70129 -26.48475 -25.23199 -24.82023 -23.47568 -23.01991 -21.74512 -19.72704 -19.39951 -18.65714 -17.60847 -17.52863 -17.07558 -16.70159 -16.28989 -16.06181 -15.84355 -15.56317 -15.42272 -14.85874 -14.46679 -14.25956 -14.02713 -13.87396 -13.61402 -13.41492 -13.31064 -13.05395 -12.77169 -12.66312 -12.30648 -12.14533 -12.03018 -11.90822 -11.73183 -11.39311 -11.28049 -10.94868 -10.74663 -10.30827 -10.21288 -10.07174 -9.74855 -9.59839 -9.36641 -8.69249 -8.56491 -8.05296 -7.77465 -6.19894 -4.21303 0.78732 0.99418 2.23196 2.69168 2.88623 3.18880 3.26335 3.33389 3.34659 3.63960 3.93477 4.13176 4.19743 4.29784 4.32585 4.37728 4.65225 4.82163 4.98367 5.06647 5.12555 5.27175 5.35110 5.40065 5.47087 5.55359 5.74579 5.80469 5.87027 6.05431 6.09526 6.14905 6.19254 6.23762 6.37170 6.44493 6.66763 6.74838 6.78044 6.96183 7.19435 7.36313 7.54125 7.73034 8.19946 8.39301 8.80094 8.87826 9.40207 10.92818 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.015630 B = 0.003102 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.966034 B = 9023.554894 C =10186.168916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.245 3.755 3 H 0.065 0.935 4 C -0.530 4.530 5 H 0.079 0.921 6 C 0.077 3.923 7 N -0.893 5.893 8 Si 0.883 3.117 9 H -0.277 1.277 10 H -0.293 1.293 11 H -0.263 1.263 12 N -0.594 5.594 13 C 0.085 3.915 14 C 0.702 3.298 15 O -0.578 6.578 16 N -0.689 5.689 17 C 0.182 3.818 18 C -0.128 4.128 19 C 0.169 3.831 20 C -0.124 4.124 21 C -0.097 4.097 22 C 0.045 3.955 23 F -0.137 7.137 24 C -0.072 4.072 25 C -0.138 4.138 26 C 0.521 3.479 27 O -0.531 6.531 28 N -0.658 5.658 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.034 0.966 32 H 0.267 0.733 33 H 0.057 0.943 34 H 0.081 0.919 35 H 0.048 0.952 36 H 0.409 0.591 37 H 0.160 0.840 38 H 0.144 0.856 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.109 0.891 42 H 0.104 0.896 43 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.343 -0.399 -22.541 23.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.143 3.857 3 H 0.083 0.917 4 C -0.569 4.569 5 H 0.097 0.903 6 C -0.127 4.127 7 N -0.531 5.531 8 Si 0.713 3.287 9 H -0.204 1.204 10 H -0.221 1.221 11 H -0.188 1.188 12 N -0.328 5.328 13 C -0.059 4.059 14 C 0.404 3.596 15 O -0.456 6.456 16 N -0.338 5.338 17 C 0.084 3.916 18 C -0.152 4.152 19 C 0.072 3.928 20 C -0.128 4.128 21 C -0.117 4.117 22 C 0.022 3.978 23 F -0.115 7.115 24 C -0.109 4.109 25 C -0.178 4.178 26 C 0.310 3.690 27 O -0.407 6.407 28 N -0.303 5.303 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.053 0.947 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.066 0.934 36 H 0.247 0.753 37 H 0.177 0.823 38 H 0.162 0.838 39 H 0.103 0.897 40 H 0.111 0.889 41 H 0.127 0.873 42 H 0.123 0.877 43 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 5.529 0.971 -22.308 23.004 hybrid contribution -1.014 -0.052 0.755 1.266 sum 4.515 0.919 -21.553 22.040 Atomic orbital electron populations 1.22491 0.99010 1.01170 0.99432 1.19270 0.89807 0.94969 0.81659 0.91695 1.21150 1.32901 1.14401 0.88428 0.90304 1.24858 0.95650 0.96576 0.95580 1.69871 1.45031 1.40140 0.98013 0.86922 0.80397 0.83798 0.77614 1.20351 1.22055 1.18766 1.47202 1.50708 1.11831 1.23025 1.21593 1.02661 0.82866 0.98761 1.15854 0.79552 0.84978 0.79254 1.90852 1.62446 1.15289 1.77024 1.42825 1.48534 1.18913 1.23574 1.17205 0.90501 0.91880 0.92061 1.20878 1.01239 0.93288 0.99764 1.17405 0.95192 0.83103 0.97117 1.19193 0.97971 0.93267 1.02397 1.20516 0.99067 0.93549 0.98534 1.17325 0.98218 0.78343 1.03950 1.91484 1.95535 1.30299 1.94218 1.20378 0.96770 0.96477 0.97272 1.21695 1.00857 0.97716 0.97495 1.20754 0.78223 0.88248 0.81776 1.90785 1.59423 1.15300 1.75186 1.43631 1.54083 1.06913 1.25649 0.92456 0.92921 0.94716 0.92349 0.92394 0.90073 0.93367 0.75275 0.82251 0.83785 0.89700 0.88888 0.87271 0.87748 0.74621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.34 8.65 37.15 0.32 -3.02 16 2 C 0.24 5.67 2.23 -69.08 -0.15 5.52 16 3 H 0.07 1.67 5.95 -51.93 -0.31 1.36 16 4 C -0.53 -14.31 8.95 -34.44 -0.31 -14.62 16 5 H 0.08 2.30 7.89 -52.49 -0.41 1.89 16 6 C 0.08 2.14 5.45 -17.82 -0.10 2.04 16 7 N -0.89 -26.51 13.96 55.43 0.77 -25.74 16 8 Si 0.88 21.34 24.37 -169.99 -4.14 17.19 16 9 H -0.28 -6.37 6.87 56.52 0.39 -5.98 16 10 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 11 H -0.26 -6.24 6.53 56.52 0.37 -5.87 16 12 N -0.59 -11.60 2.75 -181.01 -0.50 -12.10 16 13 C 0.08 1.29 9.48 59.85 0.57 1.85 16 14 C 0.70 13.38 8.13 -86.93 -0.71 12.67 16 15 O -0.58 -12.74 13.08 5.29 0.07 -12.67 16 16 N -0.69 -10.17 5.11 -14.18 -0.07 -10.24 16 17 C 0.18 2.50 6.31 -83.61 -0.53 1.98 16 18 C -0.13 -1.74 8.57 -39.23 -0.34 -2.07 16 19 C 0.17 1.90 6.50 -83.72 -0.54 1.35 16 20 C -0.12 -1.14 5.66 -104.41 -0.59 -1.73 16 21 C -0.10 -0.89 9.66 -39.58 -0.38 -1.27 16 22 C 0.04 0.53 7.31 -39.24 -0.29 0.24 16 23 F -0.14 -1.66 16.95 2.25 0.04 -1.62 16 24 C -0.07 -0.44 6.00 -27.94 -0.17 -0.61 16 25 C -0.14 -0.94 6.07 -28.04 -0.17 -1.11 16 26 C 0.52 5.70 7.72 -11.19 -0.09 5.61 16 27 O -0.53 -7.72 17.91 5.55 0.10 -7.62 16 28 N -0.66 -7.20 5.37 -10.00 -0.05 -7.26 16 29 H 0.06 1.08 6.66 -51.92 -0.35 0.74 16 30 H 0.05 1.14 3.27 -51.93 -0.17 0.97 16 31 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.08 1.21 6.43 -51.93 -0.33 0.88 16 35 H 0.05 0.54 6.30 -51.93 -0.33 0.21 16 36 H 0.41 4.98 6.35 -40.82 -0.26 4.72 16 37 H 0.16 2.44 6.19 -52.49 -0.33 2.11 16 38 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.09 0.35 8.06 -51.93 -0.42 -0.07 16 41 H 0.11 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.42 4.49 8.83 -40.82 -0.36 4.13 16 LS Contribution 349.70 15.07 5.27 5.27 Total: -1.00 -33.95 349.70 -6.97 -40.92 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -4.98 Total: 7.04 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: -3.47 Total: 6.83 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: 0.15 Total: -55.34 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: 0.17 Total: -20.28 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.14 Total: 17.19 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.95 -6.97 -40.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444390155.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.247 kcal (2) G-P(sol) polarization free energy of solvation -33.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds