Wall clock time and date at job start Tue Mar 31 2020 18:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.47432 * 2 1 4 4 C 1.50698 * 109.47331 * 120.00217 * 2 1 3 5 5 H 1.07995 * 120.00357 * 119.99605 * 4 2 1 6 6 C 1.37882 * 119.99845 * 300.00016 * 4 2 1 7 7 N 1.31519 * 119.99941 * 179.97438 * 6 4 2 8 8 Si 1.86798 * 119.99844 * 359.97438 * 6 4 2 9 9 H 1.48506 * 109.46957 * 90.00053 * 8 6 4 10 10 H 1.48503 * 109.47030 * 209.99720 * 8 6 4 11 11 H 1.48499 * 109.47309 * 329.99731 * 8 6 4 12 12 N 1.46504 * 109.47411 * 240.00120 * 2 1 3 13 13 C 1.46502 * 119.99646 * 300.00217 * 12 2 1 14 14 C 1.34773 * 120.00332 * 119.99639 * 12 2 1 15 15 O 1.21585 * 119.99791 * 0.02562 * 14 12 2 16 16 N 1.34769 * 119.99978 * 180.02562 * 14 12 2 17 17 C 1.40081 * 119.99791 * 184.44363 * 16 14 12 18 18 C 1.38713 * 120.03864 * 325.32775 * 17 16 14 19 19 C 1.38727 * 119.87693 * 179.97438 * 18 17 16 20 20 C 1.38913 * 119.96915 * 359.97438 * 19 18 17 21 21 C 1.38159 * 120.09979 * 0.02562 * 20 19 18 22 22 C 1.38334 * 120.09467 * 359.97438 * 21 20 19 23 23 F 1.35106 * 119.98040 * 179.97438 * 22 21 20 24 24 C 1.50689 * 119.80642 * 179.97438 * 20 19 18 25 25 C 1.52904 * 109.51593 * 325.98802 * 24 20 19 26 26 C 1.50472 * 109.91645 * 48.68463 * 25 24 20 27 27 O 1.21284 * 119.62135 * 144.78040 * 26 25 24 28 28 N 1.34560 * 120.75305 * 324.78287 * 26 25 24 29 29 H 1.09008 * 109.47152 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47306 * 299.99611 * 1 2 3 31 31 H 1.09004 * 109.47276 * 60.00100 * 1 2 3 32 32 H 0.96999 * 119.99548 * 180.02562 * 7 6 4 33 33 H 1.09002 * 109.47062 * 269.99841 * 13 12 2 34 34 H 1.09002 * 109.47293 * 29.99568 * 13 12 2 35 35 H 1.09001 * 109.47112 * 150.00024 * 13 12 2 36 36 H 0.96993 * 120.00635 * 4.44043 * 16 14 12 37 37 H 1.07995 * 120.06111 * 0.02562 * 18 17 16 38 38 H 1.07996 * 119.95757 * 180.02562 * 21 20 19 39 39 H 1.08998 * 109.46570 * 85.99462 * 24 20 19 40 40 H 1.08996 * 109.46405 * 205.97973 * 24 20 19 41 41 H 1.09001 * 109.40058 * 168.80857 * 25 24 20 42 42 H 1.09005 * 109.39970 * 288.54222 * 25 24 20 43 43 H 0.97001 * 119.77415 * 180.72718 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 2.1373 -0.8597 3.5565 8 14 0.6259 1.2798 2.6541 9 1 -0.8021 0.8744 2.6993 10 1 0.9772 1.9953 3.9071 11 1 0.8492 2.1773 1.4923 12 7 2.0184 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4280 14 6 2.7932 -0.0356 -2.0834 15 8 3.0872 1.1283 -1.8907 16 7 3.2420 -0.6708 -3.1840 17 6 4.1223 -0.0202 -4.0580 18 6 4.0061 1.3455 -4.2714 19 6 4.8800 1.9865 -5.1374 20 6 5.8694 1.2603 -5.7881 21 6 5.9842 -0.0999 -5.5747 22 6 5.1145 -0.7425 -4.7120 23 9 5.2285 -2.0728 -4.5055 24 6 6.8164 1.9602 -6.7284 25 6 6.0817 3.0957 -7.4417 26 6 5.3317 3.9304 -6.4392 27 8 5.2357 5.1276 -6.6082 28 7 4.7665 3.3638 -5.3575 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.9026 -0.5285 4.4375 33 1 2.4157 -2.7377 -0.9717 34 1 0.6904 -2.3002 -0.9846 35 1 1.6238 -2.2852 -2.5002 36 1 2.9556 -1.5784 -3.3709 37 1 3.2372 1.9088 -3.7638 38 1 6.7544 -0.6622 -6.0816 39 1 7.6540 2.3684 -6.1629 40 1 7.1882 1.2486 -7.4656 41 1 6.8042 3.7216 -7.9655 42 1 5.3789 2.6762 -8.1617 43 1 4.2773 3.9139 -4.7258 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000444390155.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:02 Heat of formation + Delta-G solvation = -90.540295 kcal Electronic energy + Delta-G solvation = -28937.683107 eV Core-core repulsion = 24703.842946 eV Total energy + Delta-G solvation = -4233.840161 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.86195 -42.17630 -41.47453 -39.66104 -37.73995 -36.67886 -35.44989 -34.93741 -34.21119 -32.21090 -30.61393 -29.65512 -27.84038 -27.16386 -25.68759 -24.41116 -23.92338 -23.17037 -21.02385 -20.46963 -19.82083 -19.03002 -18.46763 -18.41882 -17.86429 -17.61356 -17.16001 -17.03807 -16.71917 -16.38447 -16.19129 -15.99671 -15.17472 -15.07724 -14.98254 -14.78083 -14.59189 -14.38550 -14.30976 -14.10235 -13.92310 -13.68344 -13.45827 -13.21643 -13.06801 -12.85838 -12.75632 -12.56012 -12.15199 -12.06703 -11.95131 -11.59522 -11.38655 -11.18604 -11.13469 -10.93674 -10.81126 -9.68748 -9.38588 -8.84087 -8.36418 -6.41438 -0.11525 0.11005 1.25765 1.35548 1.37430 1.43804 1.48880 1.93866 2.05432 2.26507 2.55460 2.84076 2.99439 3.13473 3.38295 3.60769 3.70686 3.98952 4.14488 4.20495 4.27113 4.35519 4.38886 4.51204 4.54087 4.56490 4.68128 4.74992 4.87799 4.90513 4.91424 4.97366 5.04385 5.07780 5.21015 5.23088 5.28531 5.45451 5.56268 5.62185 5.78326 5.85699 6.11865 6.26773 6.60842 6.85612 6.87256 7.21758 7.42674 8.79791 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.015630 B = 0.003102 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.966034 B = 9023.554894 C =10186.168916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.249 3.751 3 H 0.035 0.965 4 C -0.528 4.528 5 H 0.044 0.956 6 C 0.023 3.977 7 N -0.940 5.940 8 Si 0.941 3.059 9 H -0.252 1.252 10 H -0.297 1.297 11 H -0.260 1.260 12 N -0.604 5.604 13 C 0.081 3.919 14 C 0.698 3.302 15 O -0.616 6.616 16 N -0.675 5.675 17 C 0.151 3.849 18 C -0.144 4.144 19 C 0.162 3.838 20 C -0.109 4.109 21 C -0.081 4.081 22 C 0.043 3.957 23 F -0.139 7.139 24 C -0.068 4.068 25 C -0.131 4.131 26 C 0.516 3.484 27 O -0.575 6.575 28 N -0.662 5.662 29 H 0.073 0.927 30 H 0.043 0.957 31 H 0.058 0.942 32 H 0.269 0.731 33 H 0.048 0.952 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.421 0.579 37 H 0.132 0.868 38 H 0.185 0.815 39 H 0.092 0.908 40 H 0.135 0.865 41 H 0.128 0.872 42 H 0.124 0.876 43 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.026 -1.023 -25.830 26.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.146 3.854 3 H 0.053 0.947 4 C -0.567 4.567 5 H 0.062 0.938 6 C -0.175 4.175 7 N -0.579 5.579 8 Si 0.768 3.232 9 H -0.177 1.177 10 H -0.225 1.225 11 H -0.185 1.185 12 N -0.338 5.338 13 C -0.061 4.061 14 C 0.400 3.600 15 O -0.497 6.497 16 N -0.325 5.325 17 C 0.054 3.946 18 C -0.168 4.168 19 C 0.066 3.934 20 C -0.113 4.113 21 C -0.100 4.100 22 C 0.020 3.980 23 F -0.117 7.117 24 C -0.105 4.105 25 C -0.171 4.171 26 C 0.307 3.693 27 O -0.454 6.454 28 N -0.305 5.305 29 H 0.092 0.908 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.103 0.897 35 H 0.110 0.890 36 H 0.261 0.739 37 H 0.150 0.850 38 H 0.202 0.798 39 H 0.110 0.890 40 H 0.153 0.847 41 H 0.146 0.854 42 H 0.142 0.858 43 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 6.215 0.282 -25.659 26.403 hybrid contribution -1.093 0.108 1.684 2.011 sum 5.122 0.390 -23.975 24.519 Atomic orbital electron populations 1.22340 0.96381 1.02497 1.00093 1.18905 0.91713 0.93176 0.81655 0.94673 1.21373 1.31832 1.13203 0.90273 0.93818 1.25643 0.97148 0.99492 0.95254 1.70005 1.47083 1.42181 0.98641 0.85978 0.79913 0.80105 0.77184 1.17715 1.22475 1.18491 1.47124 1.51152 1.13334 1.22151 1.21807 1.02380 0.80228 1.01683 1.16000 0.79303 0.84663 0.80061 1.90826 1.63694 1.17048 1.78094 1.42502 1.48417 1.19137 1.22477 1.17422 0.91756 0.92244 0.93202 1.20694 1.01740 0.93433 1.00884 1.17516 0.95618 0.83140 0.97157 1.19619 0.96983 0.93300 1.01380 1.20933 0.98567 0.93465 0.97029 1.17486 0.98136 0.78230 1.04181 1.91482 1.95518 1.30433 1.94311 1.20544 0.95746 0.96698 0.97470 1.21801 1.01223 0.97549 0.96479 1.21653 0.77610 0.88169 0.81873 1.90764 1.61166 1.17378 1.76098 1.43766 1.53920 1.06952 1.25826 0.90848 0.93806 0.92348 0.92229 0.93364 0.89663 0.88977 0.73902 0.84991 0.79752 0.88971 0.84739 0.85412 0.85780 0.75350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.17 8.65 71.98 0.62 -5.55 16 2 C 0.25 11.71 2.23 44.24 0.10 11.81 16 3 H 0.04 1.87 5.95 -2.39 -0.01 1.86 16 4 C -0.53 -29.41 8.95 25.60 0.23 -29.18 16 5 H 0.04 2.67 7.89 -2.91 -0.02 2.65 16 6 C 0.02 1.34 5.45 84.66 0.46 1.80 16 7 N -0.94 -57.49 13.96 21.45 0.30 -57.19 16 8 Si 0.94 44.53 24.37 68.60 1.67 46.20 16 9 H -0.25 -10.85 6.87 99.48 0.68 -10.17 16 10 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 11 H -0.26 -12.11 6.53 99.48 0.65 -11.46 16 12 N -0.60 -23.82 2.75 -844.86 -2.33 -26.14 16 13 C 0.08 2.40 9.48 127.77 1.21 3.62 16 14 C 0.70 27.20 8.13 179.06 1.46 28.66 16 15 O -0.62 -28.41 13.08 -3.98 -0.05 -28.46 16 16 N -0.67 -19.84 5.11 -317.05 -1.62 -21.46 16 17 C 0.15 4.09 6.31 38.13 0.24 4.33 16 18 C -0.14 -3.98 8.57 22.50 0.19 -3.79 16 19 C 0.16 3.51 6.50 38.12 0.25 3.76 16 20 C -0.11 -1.63 5.66 -19.72 -0.11 -1.74 16 21 C -0.08 -1.15 9.66 22.27 0.22 -0.93 16 22 C 0.04 0.91 7.31 22.49 0.16 1.07 16 23 F -0.14 -3.05 16.95 44.97 0.76 -2.29 16 24 C -0.07 -0.50 6.00 29.81 0.18 -0.33 16 25 C -0.13 -1.31 6.07 29.74 0.18 -1.13 16 26 C 0.52 10.70 7.72 87.62 0.68 11.38 16 27 O -0.57 -16.68 17.91 -3.04 -0.05 -16.74 16 28 N -0.66 -14.47 5.37 -304.07 -1.63 -16.10 16 29 H 0.07 2.65 6.66 -2.38 -0.02 2.63 16 30 H 0.04 1.81 3.27 -2.39 -0.01 1.81 16 31 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 32 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 33 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.08 2.44 6.43 -2.39 -0.02 2.43 16 35 H 0.09 1.87 6.30 -2.39 -0.02 1.85 16 36 H 0.42 9.79 6.35 -92.71 -0.59 9.21 16 37 H 0.13 4.36 6.19 -2.91 -0.02 4.34 16 38 H 0.19 1.19 8.06 -2.91 -0.02 1.16 16 39 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.13 0.04 8.06 -2.39 -0.02 0.02 16 41 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.12 0.82 8.14 -2.38 -0.02 0.80 16 43 H 0.41 9.48 8.83 -92.71 -0.82 8.66 16 Total: -1.00 -79.07 349.70 2.73 -76.34 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: -0.39 Total: 22.05 kcal Atomic # 6 Polarization: 17.72 SS G_CDS: 6.06 Total: 23.79 kcal Atomic # 7 Polarization: -115.62 SS G_CDS: -5.28 Total: -120.89 kcal Atomic # 8 Polarization: -45.09 SS G_CDS: -0.11 Total: -45.20 kcal Atomic # 9 Polarization: -3.05 SS G_CDS: 0.76 Total: -2.29 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.67 Total: 46.20 kcal Total: -79.07 2.73 -76.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444390155.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.200 kcal (2) G-P(sol) polarization free energy of solvation -79.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds