Wall clock time and date at job start Tue Mar 31 2020 18:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 S 1.81405 * 109.46650 * 2 1 4 4 C 1.81401 * 102.99971 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.47089 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.47059 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.47220 * 54.99566 * 6 5 4 8 8 C 1.52998 * 109.47377 * 174.99433 * 6 5 4 9 9 N 1.46493 * 109.47254 * 294.99546 * 6 5 4 10 10 C 1.46501 * 120.00299 * 300.00234 * 9 6 5 11 11 S 1.65610 * 120.00104 * 119.99868 * 9 6 5 12 12 O 1.42101 * 104.27406 * 206.07379 * 11 9 6 13 13 O 1.42099 * 104.27194 * 333.93140 * 11 9 6 14 14 C 1.81400 * 104.44659 * 90.00221 * 11 9 6 15 15 C 1.52995 * 109.46782 * 173.94827 * 14 11 9 16 16 C 1.50705 * 115.55383 * 65.19984 * 15 14 11 17 17 H 1.07998 * 119.99971 * 264.78533 * 16 15 14 18 18 C 1.37873 * 120.00102 * 84.77843 * 16 15 14 19 19 N 1.31517 * 120.00031 * 352.23546 * 18 16 15 20 20 Si 1.86803 * 119.99921 * 172.23254 * 18 16 15 21 21 H 1.48499 * 109.46862 * 90.00290 * 20 18 16 22 22 H 1.48495 * 109.47099 * 210.00283 * 20 18 16 23 23 H 1.48499 * 109.47371 * 330.00549 * 20 18 16 24 24 C 1.52998 * 117.50205 * 279.52864 * 15 14 11 25 25 C 1.53004 * 117.49923 * 210.86558 * 15 14 11 26 26 H 1.08998 * 109.47306 * 60.00861 * 1 2 3 27 27 H 1.09007 * 109.46658 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47477 * 300.00069 * 1 2 3 29 29 H 1.08997 * 109.47477 * 239.99931 * 2 1 3 30 30 H 1.08998 * 109.47306 * 119.99139 * 2 1 3 31 31 H 1.08998 * 109.47240 * 59.99168 * 4 3 2 32 32 H 1.09005 * 109.46639 * 299.99585 * 4 3 2 33 33 H 1.08998 * 109.47945 * 59.99371 * 5 4 3 34 34 H 1.09005 * 109.46855 * 299.99225 * 5 4 3 35 35 H 1.08995 * 109.47757 * 179.97438 * 8 6 5 36 36 H 1.09001 * 109.47283 * 300.00177 * 8 6 5 37 37 H 1.09001 * 109.46837 * 59.99898 * 8 6 5 38 38 H 1.08997 * 109.47069 * 89.99182 * 10 9 6 39 39 H 1.08993 * 109.47295 * 210.00359 * 10 9 6 40 40 H 1.09001 * 109.46581 * 329.99677 * 10 9 6 41 41 H 1.09001 * 109.46870 * 293.94734 * 14 11 9 42 42 H 1.08994 * 109.47246 * 53.94963 * 14 11 9 43 43 H 0.97003 * 119.99696 * 185.02748 * 19 18 16 44 44 H 1.09000 * 117.49650 * 359.97438 * 24 15 14 45 45 H 1.09002 * 117.50330 * 145.02331 * 24 15 14 46 46 H 1.08996 * 117.50140 * 214.97586 * 25 15 14 47 47 H 1.09002 * 117.49675 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7104 0.0000 4 6 3.9370 1.5060 -0.0008 5 6 4.6062 2.8819 -0.0002 6 6 6.1265 2.7096 -0.0002 7 1 6.4212 2.0832 -0.8423 8 6 6.7952 4.0800 -0.1255 9 7 6.5460 2.0742 1.2513 10 6 6.2635 2.7242 2.5335 11 16 7.3394 0.6209 1.2168 12 8 7.0438 0.0304 2.4751 13 8 6.9103 0.0161 0.0047 14 6 9.0952 1.0662 1.1194 15 6 9.9490 -0.1983 1.2329 16 6 9.8045 -1.1839 0.1020 17 1 9.1188 -2.0133 0.1929 18 6 10.5475 -1.0267 -1.0487 19 7 11.2658 0.0609 -1.2242 20 14 10.5340 -2.3586 -2.3585 21 1 9.4392 -2.0908 -3.3254 22 1 11.8356 -2.3631 -3.0732 23 1 10.3163 -3.6806 -1.7180 24 6 10.1942 -0.7618 2.6340 25 6 11.3288 -0.0634 1.8802 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5137 0.8900 31 1 4.2398 0.9546 -0.8909 32 1 4.2405 0.9545 0.8891 33 1 4.3034 3.4330 0.8901 34 1 4.3028 3.4338 -0.8899 35 1 7.8782 3.9573 -0.1251 36 1 6.4831 4.5528 -1.0568 37 1 6.5005 4.7063 0.7165 38 1 5.2931 2.3927 2.9029 39 1 7.0369 2.4582 3.2539 40 1 6.2503 3.8056 2.3973 41 1 9.2938 1.5543 0.1652 42 1 9.3434 1.7464 1.9340 43 1 11.7302 0.2052 -2.0635 44 1 9.7475 -0.2315 3.4750 45 1 10.2513 -1.8454 2.7378 46 1 12.1317 -0.6878 1.4886 47 1 11.6284 0.9264 2.2249 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451264458.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:25 Heat of formation + Delta-G solvation = -63.284048 kcal Electronic energy + Delta-G solvation = -26308.275421 eV Core-core repulsion = 22744.981556 eV Total energy + Delta-G solvation = -3563.293865 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.138 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -37.82778 -36.77704 -36.33397 -35.10306 -32.92146 -32.56175 -32.07229 -29.92933 -28.17786 -26.30860 -25.48004 -24.48203 -22.99196 -21.24482 -20.67207 -19.49569 -18.36461 -17.29188 -16.55172 -16.19752 -15.83546 -15.45406 -15.07948 -14.74914 -14.64781 -14.52888 -14.15990 -13.92216 -13.78453 -13.51232 -13.12923 -12.77101 -12.60107 -12.31870 -12.27172 -11.94956 -11.91839 -11.85894 -11.70927 -11.47617 -11.30701 -11.22158 -11.06818 -10.99461 -10.96718 -10.81896 -10.60905 -10.58941 -10.47762 -10.14350 -9.99532 -9.74800 -8.99621 -8.84188 -8.59153 -8.09957 -7.71555 -6.16913 -4.27496 1.00420 1.63070 2.56206 3.27983 3.28997 3.33739 3.38694 4.34298 4.54575 4.67593 4.78180 4.78717 4.82135 4.95969 4.97209 5.10705 5.16555 5.17865 5.23302 5.35514 5.44441 5.56787 5.60619 5.60770 5.61157 5.65828 5.73020 5.76959 5.85502 5.87305 5.92370 5.95442 6.06642 6.18782 6.22222 6.32655 6.42687 6.58564 6.68873 6.86626 6.96677 7.21908 7.36085 7.77243 8.17425 8.77689 9.43666 10.90712 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012965 B = 0.003887 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.191730 B = 7201.154488 C = 7935.522536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.090 4.090 3 S -0.279 6.279 4 C -0.080 4.080 5 C -0.105 4.105 6 C 0.147 3.853 7 H 0.106 0.894 8 C -0.163 4.163 9 N -1.010 6.010 10 C 0.095 3.905 11 S 2.602 3.398 12 O -0.971 6.971 13 O -0.948 6.948 14 C -0.553 4.553 15 C 0.043 3.957 16 C -0.516 4.516 17 H 0.067 0.933 18 C 0.083 3.917 19 N -0.874 5.874 20 Si 0.890 3.110 21 H -0.275 1.275 22 H -0.284 1.284 23 H -0.270 1.270 24 C -0.209 4.209 25 C -0.141 4.141 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.053 0.947 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.133 0.867 42 H 0.096 0.904 43 H 0.263 0.737 44 H 0.074 0.926 45 H 0.086 0.914 46 H 0.086 0.914 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.092 8.160 3.196 15.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.238 4.238 3 S -0.053 6.053 4 C -0.229 4.229 5 C -0.145 4.145 6 C 0.039 3.961 7 H 0.124 0.876 8 C -0.222 4.222 9 N -0.846 5.846 10 C -0.051 4.051 11 S 2.701 3.299 12 O -0.961 6.961 13 O -0.938 6.938 14 C -0.686 4.686 15 C 0.041 3.959 16 C -0.553 4.553 17 H 0.085 0.915 18 C -0.122 4.122 19 N -0.509 5.509 20 Si 0.717 3.283 21 H -0.200 1.200 22 H -0.210 1.210 23 H -0.194 1.194 24 C -0.246 4.246 25 C -0.180 4.180 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.109 0.891 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.151 0.849 42 H 0.115 0.885 43 H 0.073 0.927 44 H 0.093 0.907 45 H 0.105 0.895 46 H 0.104 0.896 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.995 8.307 3.128 16.573 hybrid contribution 1.391 -1.159 -0.746 1.958 sum -12.604 7.149 2.383 14.685 Atomic orbital electron populations 1.21506 0.92378 1.02409 1.02980 1.23296 0.99914 0.95330 1.05288 1.86600 1.07145 1.13344 1.98220 1.23421 0.91580 1.01844 1.06027 1.21652 0.94406 0.94974 1.03516 1.20886 0.93116 0.95382 0.86720 0.87610 1.22169 1.01584 0.96317 1.02152 1.57978 1.73440 1.42299 1.10871 1.21329 1.01385 0.98309 0.84029 1.05376 0.77711 0.72725 0.74110 1.93494 1.84124 1.74362 1.44167 1.93521 1.80394 1.73000 1.46896 1.30018 1.21081 1.07954 1.09557 1.18286 0.95153 0.91167 0.91289 1.20504 1.25093 1.10424 0.99311 0.91457 1.24942 0.93793 0.95540 0.97945 1.69979 1.30785 1.25322 1.24843 0.86597 0.77503 0.82546 0.81650 1.20039 1.21014 1.19432 1.23200 1.05776 0.99954 0.95689 1.22555 0.93016 0.99231 1.03231 0.91790 0.91207 0.91809 0.89923 0.90018 0.89090 0.90171 0.90610 0.90091 0.91554 0.91451 0.92095 0.92879 0.91372 0.91297 0.84875 0.88517 0.92716 0.90740 0.89531 0.89567 0.91537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.16 9.92 37.16 0.37 -0.79 16 2 C -0.09 -0.98 6.66 37.16 0.25 -0.73 16 3 S -0.28 -3.51 21.74 -107.50 -2.34 -5.85 16 4 C -0.08 -1.10 5.83 37.15 0.22 -0.89 16 5 C -0.11 -1.24 4.65 -26.73 -0.12 -1.36 16 6 C 0.15 1.93 2.58 -67.93 -0.17 1.76 16 7 H 0.11 1.58 6.87 -51.93 -0.36 1.22 16 8 C -0.16 -1.73 9.17 37.16 0.34 -1.39 16 9 N -1.01 -14.95 2.45 -114.62 -0.28 -15.23 16 10 C 0.10 1.15 9.16 59.85 0.55 1.70 16 11 S 2.60 51.76 5.10 -107.50 -0.55 51.21 16 12 O -0.97 -21.09 17.09 -57.54 -0.98 -22.07 16 13 O -0.95 -21.57 16.23 -57.54 -0.93 -22.50 16 14 C -0.55 -11.49 6.03 37.15 0.22 -11.26 16 15 C 0.04 1.05 1.32 -155.66 -0.21 0.84 16 16 C -0.52 -14.00 8.18 -34.44 -0.28 -14.28 16 17 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 18 C 0.08 2.24 5.38 -17.82 -0.10 2.14 16 19 N -0.87 -23.73 12.98 55.43 0.72 -23.01 16 20 Si 0.89 21.15 29.55 -169.99 -5.02 16.13 16 21 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 24 C -0.21 -4.58 9.96 -26.69 -0.27 -4.84 16 25 C -0.14 -3.20 9.49 -26.69 -0.25 -3.45 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.08 0.90 8.14 -51.92 -0.42 0.48 16 31 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 32 H 0.08 1.22 7.75 -51.92 -0.40 0.82 16 33 H 0.08 0.83 7.51 -51.93 -0.39 0.44 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.55 6.66 -51.93 -0.35 0.21 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.81 7.79 -51.93 -0.40 0.41 16 40 H 0.07 0.64 6.43 -51.93 -0.33 0.30 16 41 H 0.13 2.87 8.14 -51.92 -0.42 2.45 16 42 H 0.10 1.70 8.09 -51.93 -0.42 1.28 16 43 H 0.26 6.81 8.32 -40.82 -0.34 6.47 16 44 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 45 H 0.09 1.88 8.14 -51.93 -0.42 1.45 16 46 H 0.09 2.06 8.14 -51.93 -0.42 1.63 16 47 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 LS Contribution 404.16 15.07 6.09 6.09 Total: -1.00 -31.31 404.16 -11.29 -42.61 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -8.54 Total: 5.19 kcal Atomic # 6 Polarization: -33.12 SS G_CDS: 0.54 Total: -32.57 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: 0.44 Total: -38.24 kcal Atomic # 8 Polarization: -42.65 SS G_CDS: -1.92 Total: -44.57 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 48.25 SS G_CDS: -2.89 Total: 45.36 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.31 -11.29 -42.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451264458.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.677 kcal (2) G-P(sol) polarization free energy of solvation -31.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds