Wall clock time and date at job start Tue Mar 31 2020 18:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 S 1.81405 * 109.46650 * 2 1 4 4 C 1.81401 * 102.99971 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.47089 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.47059 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.47220 * 54.99566 * 6 5 4 8 8 C 1.52998 * 109.47377 * 174.99433 * 6 5 4 9 9 N 1.46493 * 109.47254 * 294.99546 * 6 5 4 10 10 C 1.46501 * 120.00299 * 300.00234 * 9 6 5 11 11 S 1.65610 * 120.00104 * 119.99868 * 9 6 5 12 12 O 1.42101 * 104.27406 * 206.07379 * 11 9 6 13 13 O 1.42099 * 104.27194 * 333.93140 * 11 9 6 14 14 C 1.81400 * 104.44659 * 90.00221 * 11 9 6 15 15 C 1.52995 * 109.46782 * 173.94827 * 14 11 9 16 16 C 1.50705 * 115.55383 * 65.19984 * 15 14 11 17 17 H 1.07998 * 119.99971 * 264.78533 * 16 15 14 18 18 C 1.37873 * 120.00102 * 84.77843 * 16 15 14 19 19 N 1.31517 * 120.00031 * 352.23546 * 18 16 15 20 20 Si 1.86803 * 119.99921 * 172.23254 * 18 16 15 21 21 H 1.48499 * 109.46862 * 90.00290 * 20 18 16 22 22 H 1.48495 * 109.47099 * 210.00283 * 20 18 16 23 23 H 1.48499 * 109.47371 * 330.00549 * 20 18 16 24 24 C 1.52998 * 117.50205 * 279.52864 * 15 14 11 25 25 C 1.53004 * 117.49923 * 210.86558 * 15 14 11 26 26 H 1.08998 * 109.47306 * 60.00861 * 1 2 3 27 27 H 1.09007 * 109.46658 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47477 * 300.00069 * 1 2 3 29 29 H 1.08997 * 109.47477 * 239.99931 * 2 1 3 30 30 H 1.08998 * 109.47306 * 119.99139 * 2 1 3 31 31 H 1.08998 * 109.47240 * 59.99168 * 4 3 2 32 32 H 1.09005 * 109.46639 * 299.99585 * 4 3 2 33 33 H 1.08998 * 109.47945 * 59.99371 * 5 4 3 34 34 H 1.09005 * 109.46855 * 299.99225 * 5 4 3 35 35 H 1.08995 * 109.47757 * 179.97438 * 8 6 5 36 36 H 1.09001 * 109.47283 * 300.00177 * 8 6 5 37 37 H 1.09001 * 109.46837 * 59.99898 * 8 6 5 38 38 H 1.08997 * 109.47069 * 89.99182 * 10 9 6 39 39 H 1.08993 * 109.47295 * 210.00359 * 10 9 6 40 40 H 1.09001 * 109.46581 * 329.99677 * 10 9 6 41 41 H 1.09001 * 109.46870 * 293.94734 * 14 11 9 42 42 H 1.08994 * 109.47246 * 53.94963 * 14 11 9 43 43 H 0.97003 * 119.99696 * 185.02748 * 19 18 16 44 44 H 1.09000 * 117.49650 * 359.97438 * 24 15 14 45 45 H 1.09002 * 117.50330 * 145.02331 * 24 15 14 46 46 H 1.08996 * 117.50140 * 214.97586 * 25 15 14 47 47 H 1.09002 * 117.49675 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7104 0.0000 4 6 3.9370 1.5060 -0.0008 5 6 4.6062 2.8819 -0.0002 6 6 6.1265 2.7096 -0.0002 7 1 6.4212 2.0832 -0.8423 8 6 6.7952 4.0800 -0.1255 9 7 6.5460 2.0742 1.2513 10 6 6.2635 2.7242 2.5335 11 16 7.3394 0.6209 1.2168 12 8 7.0438 0.0304 2.4751 13 8 6.9103 0.0161 0.0047 14 6 9.0952 1.0662 1.1194 15 6 9.9490 -0.1983 1.2329 16 6 9.8045 -1.1839 0.1020 17 1 9.1188 -2.0133 0.1929 18 6 10.5475 -1.0267 -1.0487 19 7 11.2658 0.0609 -1.2242 20 14 10.5340 -2.3586 -2.3585 21 1 9.4392 -2.0908 -3.3254 22 1 11.8356 -2.3631 -3.0732 23 1 10.3163 -3.6806 -1.7180 24 6 10.1942 -0.7618 2.6340 25 6 11.3288 -0.0634 1.8802 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5137 0.8900 31 1 4.2398 0.9546 -0.8909 32 1 4.2405 0.9545 0.8891 33 1 4.3034 3.4330 0.8901 34 1 4.3028 3.4338 -0.8899 35 1 7.8782 3.9573 -0.1251 36 1 6.4831 4.5528 -1.0568 37 1 6.5005 4.7063 0.7165 38 1 5.2931 2.3927 2.9029 39 1 7.0369 2.4582 3.2539 40 1 6.2503 3.8056 2.3973 41 1 9.2938 1.5543 0.1652 42 1 9.3434 1.7464 1.9340 43 1 11.7302 0.2052 -2.0635 44 1 9.7475 -0.2315 3.4750 45 1 10.2513 -1.8454 2.7378 46 1 12.1317 -0.6878 1.4886 47 1 11.6284 0.9264 2.2249 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451264458.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:24 Heat of formation + Delta-G solvation = -81.020142 kcal Electronic energy + Delta-G solvation = -26309.044515 eV Core-core repulsion = 22744.981556 eV Total energy + Delta-G solvation = -3564.062960 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.138 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -38.92284 -38.57075 -37.98355 -36.76957 -34.10864 -33.72563 -33.62817 -30.89578 -29.85302 -27.56857 -27.27088 -25.38945 -23.87989 -23.02304 -21.89990 -21.21914 -19.72928 -18.73039 -18.38645 -17.24943 -17.16715 -16.91542 -16.63732 -16.20072 -15.89746 -15.67453 -15.60680 -15.14020 -15.03624 -14.76940 -14.53135 -13.78027 -13.76214 -13.66450 -13.54036 -13.36520 -13.27202 -13.12724 -12.92133 -12.88567 -12.82754 -12.68988 -12.53745 -12.45420 -12.32960 -12.25628 -12.08445 -11.94017 -11.87910 -11.62153 -11.51324 -11.00014 -10.89918 -10.57490 -10.16492 -9.74335 -8.72443 -8.21486 -6.36194 -0.54350 0.65865 1.36257 1.38517 1.47046 1.56372 1.92926 2.37274 2.98354 3.05361 3.32307 3.39127 3.61451 3.85124 3.91897 3.95415 4.00443 4.05371 4.18706 4.24646 4.35461 4.46998 4.47570 4.49652 4.56286 4.62584 4.71739 4.79097 4.82962 4.83933 4.85702 4.87783 4.92416 4.94139 5.03296 5.06764 5.18008 5.18532 5.30602 5.43666 5.46776 5.55665 5.69094 5.77880 6.20231 6.69362 7.35987 8.85539 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012965 B = 0.003887 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.191730 B = 7201.154488 C = 7935.522536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.094 4.094 3 S -0.280 6.280 4 C -0.083 4.083 5 C -0.097 4.097 6 C 0.141 3.859 7 H 0.080 0.920 8 C -0.159 4.159 9 N -1.000 6.000 10 C 0.084 3.916 11 S 2.615 3.385 12 O -0.993 6.993 13 O -0.987 6.987 14 C -0.552 4.552 15 C 0.012 3.988 16 C -0.535 4.535 17 H 0.046 0.954 18 C 0.045 3.955 19 N -0.890 5.890 20 Si 0.933 3.067 21 H -0.276 1.276 22 H -0.272 1.272 23 H -0.270 1.270 24 C -0.198 4.198 25 C -0.138 4.138 26 H 0.066 0.934 27 H 0.087 0.913 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.059 0.941 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.056 0.944 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.055 0.945 39 H 0.071 0.929 40 H 0.105 0.895 41 H 0.121 0.879 42 H 0.129 0.871 43 H 0.266 0.734 44 H 0.098 0.902 45 H 0.081 0.919 46 H 0.066 0.934 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.097 10.022 3.788 17.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.242 4.242 3 S -0.054 6.054 4 C -0.231 4.231 5 C -0.137 4.137 6 C 0.033 3.967 7 H 0.098 0.902 8 C -0.218 4.218 9 N -0.839 5.839 10 C -0.061 4.061 11 S 2.714 3.286 12 O -0.984 6.984 13 O -0.977 6.977 14 C -0.684 4.684 15 C 0.010 3.990 16 C -0.573 4.573 17 H 0.064 0.936 18 C -0.158 4.158 19 N -0.526 5.526 20 Si 0.758 3.242 21 H -0.202 1.202 22 H -0.197 1.197 23 H -0.195 1.195 24 C -0.236 4.236 25 C -0.177 4.177 26 H 0.085 0.915 27 H 0.106 0.894 28 H 0.084 0.916 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.110 0.890 34 H 0.117 0.883 35 H 0.075 0.925 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.124 0.876 41 H 0.139 0.861 42 H 0.147 0.853 43 H 0.075 0.925 44 H 0.116 0.884 45 H 0.100 0.900 46 H 0.085 0.915 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.984 10.160 3.727 18.483 hybrid contribution 1.628 -1.741 -0.902 2.549 sum -13.356 8.420 2.824 16.039 Atomic orbital electron populations 1.21507 0.90383 1.03651 1.03210 1.23438 1.01601 0.94129 1.05028 1.86513 1.05900 1.14815 1.98158 1.23386 0.92912 1.02748 1.04102 1.21656 0.92961 0.94001 1.05130 1.21074 0.94378 0.96206 0.85014 0.90170 1.22160 1.00677 0.94781 1.04152 1.57570 1.72399 1.41133 1.12765 1.21656 1.01638 1.00276 0.82487 1.04658 0.77455 0.73664 0.72851 1.93452 1.84308 1.75827 1.44781 1.93467 1.80862 1.74919 1.48416 1.29921 1.21484 1.06883 1.10157 1.18414 0.96846 0.92310 0.91477 1.20666 1.24873 1.10813 1.00907 0.93582 1.25490 0.93762 0.97119 0.99446 1.70019 1.31186 1.26091 1.25337 0.85932 0.77859 0.80598 0.79790 1.20185 1.19674 1.19487 1.23243 1.04937 0.99982 0.95393 1.22516 0.92099 1.00063 1.03053 0.91495 0.89449 0.91577 0.90120 0.90423 0.90943 0.92208 0.88976 0.88305 0.92535 0.89694 0.89776 0.92607 0.91075 0.87647 0.86101 0.85286 0.92486 0.88370 0.90046 0.91522 0.89341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.04 9.92 71.98 0.71 -1.32 16 2 C -0.09 -2.00 6.66 71.98 0.48 -1.52 16 3 S -0.28 -6.80 21.74 -56.49 -1.23 -8.02 16 4 C -0.08 -2.27 5.83 71.98 0.42 -1.85 16 5 C -0.10 -2.13 4.65 30.59 0.14 -1.99 16 6 C 0.14 3.53 2.58 44.99 0.12 3.65 16 7 H 0.08 2.44 6.87 -2.39 -0.02 2.42 16 8 C -0.16 -2.94 9.17 71.98 0.66 -2.28 16 9 N -1.00 -28.44 2.45 -516.54 -1.27 -29.71 16 10 C 0.08 1.80 9.16 127.77 1.17 2.97 16 11 S 2.62 104.67 5.10 -56.49 -0.29 104.38 16 12 O -0.99 -43.10 17.09 -127.65 -2.18 -45.29 16 13 O -0.99 -46.62 16.23 -127.65 -2.07 -48.69 16 14 C -0.55 -22.71 6.03 71.98 0.43 -22.27 16 15 C 0.01 0.57 1.32 -52.93 -0.07 0.50 16 16 C -0.54 -29.74 8.18 25.60 0.21 -29.53 16 17 H 0.05 2.67 7.83 -2.91 -0.02 2.65 16 18 C 0.05 2.46 5.38 84.65 0.46 2.92 16 19 N -0.89 -48.73 12.98 21.45 0.28 -48.46 16 20 Si 0.93 43.87 29.55 68.60 2.03 45.90 16 21 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 22 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 23 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 24 C -0.20 -8.57 9.96 30.62 0.30 -8.27 16 25 C -0.14 -6.19 9.49 30.62 0.29 -5.90 16 26 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 28 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.07 2.20 8.14 -2.39 -0.02 2.19 16 32 H 0.06 1.85 7.75 -2.39 -0.02 1.83 16 33 H 0.09 1.73 7.51 -2.39 -0.02 1.72 16 34 H 0.10 1.84 8.14 -2.38 -0.02 1.82 16 35 H 0.06 1.17 8.14 -2.39 -0.02 1.16 16 36 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.08 1.17 6.66 -2.39 -0.02 1.15 16 38 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.07 1.51 7.79 -2.39 -0.02 1.49 16 40 H 0.11 1.50 6.43 -2.39 -0.02 1.49 16 41 H 0.12 5.26 8.14 -2.39 -0.02 5.24 16 42 H 0.13 4.30 8.09 -2.39 -0.02 4.28 16 43 H 0.27 13.81 8.32 -92.71 -0.77 13.04 16 44 H 0.10 3.73 8.14 -2.39 -0.02 3.72 16 45 H 0.08 3.54 8.14 -2.39 -0.02 3.52 16 46 H 0.07 3.21 8.14 -2.39 -0.02 3.19 16 47 H 0.09 3.51 8.14 -2.39 -0.02 3.49 16 Total: -1.00 -68.57 404.16 1.51 -67.06 By element: Atomic # 1 Polarization: 26.82 SS G_CDS: 0.91 Total: 27.74 kcal Atomic # 6 Polarization: -70.23 SS G_CDS: 5.33 Total: -64.91 kcal Atomic # 7 Polarization: -77.18 SS G_CDS: -0.99 Total: -78.17 kcal Atomic # 8 Polarization: -89.73 SS G_CDS: -4.25 Total: -93.98 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: 97.87 SS G_CDS: -1.52 Total: 96.36 kcal Total: -68.57 1.51 -67.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451264458.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.960 kcal (2) G-P(sol) polarization free energy of solvation -68.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds