Wall clock time and date at job start Tue Mar 31 2020 18:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 S 1.81393 * 109.47347 * 2 1 4 4 C 1.81396 * 103.00068 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.47162 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47035 * 180.02562 * 5 4 3 7 7 H 1.08998 * 109.47645 * 305.00563 * 6 5 4 8 8 C 1.53001 * 109.47140 * 185.00246 * 6 5 4 9 9 N 1.46500 * 109.47447 * 65.00244 * 6 5 4 10 10 C 1.46508 * 119.99716 * 59.99668 * 9 6 5 11 11 S 1.65601 * 120.00413 * 240.00349 * 9 6 5 12 12 O 1.42104 * 104.27514 * 333.92415 * 11 9 6 13 13 O 1.42096 * 104.27563 * 206.06660 * 11 9 6 14 14 C 1.81399 * 104.44966 * 89.99362 * 11 9 6 15 15 C 1.53000 * 109.46950 * 173.49715 * 14 11 9 16 16 C 1.50711 * 115.54887 * 295.20430 * 15 14 11 17 17 H 1.07999 * 119.99791 * 95.14613 * 16 15 14 18 18 C 1.37870 * 119.99613 * 274.87279 * 16 15 14 19 19 N 1.31509 * 120.00621 * 6.47988 * 18 16 15 20 20 Si 1.86812 * 119.99658 * 186.47604 * 18 16 15 21 21 H 1.48504 * 109.46853 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47005 * 119.99861 * 20 18 16 23 23 H 1.48501 * 109.47046 * 240.00295 * 20 18 16 24 24 C 1.52994 * 117.50051 * 80.87192 * 15 14 11 25 25 C 1.53001 * 117.49974 * 149.53522 * 15 14 11 26 26 H 1.08999 * 109.46916 * 59.99490 * 1 2 3 27 27 H 1.08996 * 109.47185 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46611 * 299.99926 * 1 2 3 29 29 H 1.09006 * 109.46611 * 240.00074 * 2 1 3 30 30 H 1.08999 * 109.46916 * 120.00510 * 2 1 3 31 31 H 1.09009 * 109.46974 * 60.00377 * 4 3 2 32 32 H 1.08997 * 109.47366 * 300.00357 * 4 3 2 33 33 H 1.08997 * 109.46843 * 60.00806 * 5 4 3 34 34 H 1.08997 * 109.47367 * 300.00473 * 5 4 3 35 35 H 1.08999 * 109.46743 * 60.00377 * 8 6 5 36 36 H 1.09008 * 109.47179 * 179.97438 * 8 6 5 37 37 H 1.08996 * 109.46984 * 299.99881 * 8 6 5 38 38 H 1.09002 * 109.47067 * 269.99999 * 10 9 6 39 39 H 1.08993 * 109.47044 * 30.00645 * 10 9 6 40 40 H 1.09002 * 109.46912 * 150.00203 * 10 9 6 41 41 H 1.09002 * 109.46929 * 53.49998 * 14 11 9 42 42 H 1.08997 * 109.47684 * 293.49657 * 14 11 9 43 43 H 0.97003 * 120.00566 * 185.03627 * 19 18 16 44 44 H 1.08997 * 117.50263 * 215.00093 * 24 15 14 45 45 H 1.08998 * 117.49817 * 0.03047 * 24 15 14 46 46 H 1.08997 * 117.49617 * 359.97438 * 25 15 14 47 47 H 1.09002 * 117.49408 * 144.97253 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1348 1.7102 0.0000 4 6 3.9372 1.5057 -0.0008 5 6 4.6066 2.8815 -0.0015 6 6 6.1268 2.7090 -0.0028 7 1 6.4222 2.0824 0.8387 8 6 6.7957 4.0794 0.1222 9 7 6.5452 2.0739 -1.2549 10 6 6.2617 2.7244 -2.5367 11 16 7.3385 0.6206 -1.2216 12 8 7.9709 0.5957 0.0507 13 8 8.1023 0.6108 -2.4198 14 6 6.0161 -0.6188 -1.2994 15 6 6.6313 -2.0127 -1.4388 16 6 7.3924 -2.2626 -2.7154 17 1 8.4634 -2.1261 -2.7410 18 6 6.7220 -2.6710 -3.8488 19 7 5.4079 -2.7198 -3.8540 20 14 7.6807 -3.1548 -5.3775 21 1 9.1354 -3.0141 -5.1146 22 1 7.3755 -4.5654 -5.7273 23 1 7.2931 -2.2700 -6.5055 24 6 7.1452 -2.6886 -0.1661 25 6 5.8615 -3.1883 -0.8336 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8901 29 1 1.8934 -0.5139 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 4.2399 0.9543 -0.8911 32 1 4.2407 0.9540 0.8889 33 1 4.3040 3.4332 0.8885 34 1 4.3031 3.4328 -0.8914 35 1 6.4845 4.5518 1.0539 36 1 7.8788 3.9564 0.1218 37 1 6.5004 4.7059 -0.7193 38 1 5.2909 2.3930 -2.9055 39 1 6.2487 3.8057 -2.4003 40 1 7.0345 2.4584 -3.2579 41 1 5.3779 -0.4156 -2.1594 42 1 5.4216 -0.5736 -0.3870 43 1 4.9387 -3.0758 -4.6248 44 1 8.0338 -3.3140 -0.2520 45 1 7.0447 -2.1404 0.7706 46 1 4.9171 -2.9686 -0.3357 47 1 5.9053 -4.1424 -1.3589 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451264463.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:28 Heat of formation + Delta-G solvation = -61.680375 kcal Electronic energy + Delta-G solvation = -26837.674711 eV Core-core repulsion = 23274.450387 eV Total energy + Delta-G solvation = -3563.224325 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.138 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -37.86300 -36.82701 -36.36001 -35.13210 -32.82437 -32.53325 -32.05696 -30.08884 -28.18841 -26.26539 -25.47355 -24.46176 -22.96624 -21.29553 -20.66506 -19.58389 -18.35107 -17.32650 -16.57585 -16.15822 -15.76508 -15.24683 -15.22614 -14.86221 -14.75524 -14.48594 -14.17961 -13.97127 -13.71108 -13.49899 -13.12084 -12.75838 -12.52019 -12.29677 -12.22487 -12.04339 -11.90480 -11.79327 -11.68691 -11.43536 -11.35070 -11.15026 -11.04988 -10.97976 -10.94689 -10.91452 -10.64805 -10.54457 -10.51109 -10.16154 -9.94179 -9.75646 -8.99954 -8.82290 -8.57721 -8.12550 -7.67372 -6.16614 -4.25159 0.99159 1.64836 2.58126 3.25911 3.27209 3.35643 3.43433 4.36755 4.53872 4.60093 4.74855 4.88505 4.89964 4.92701 4.96048 5.10561 5.11602 5.20345 5.26271 5.33479 5.42309 5.51370 5.57028 5.65837 5.67497 5.72905 5.74004 5.80224 5.84648 5.90008 5.96578 5.96833 6.08926 6.16147 6.18156 6.27732 6.39240 6.53677 6.63140 6.87057 6.92932 7.17529 7.32582 7.79952 8.16812 8.81706 9.45761 10.91838 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.009839 B = 0.005349 C = 0.004165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2845.274796 B = 5232.984471 C = 6720.946607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.091 4.091 3 S -0.272 6.272 4 C -0.097 4.097 5 C -0.112 4.112 6 C 0.148 3.852 7 H 0.100 0.900 8 C -0.157 4.157 9 N -1.008 6.008 10 C 0.084 3.916 11 S 2.601 3.399 12 O -0.976 6.976 13 O -0.939 6.939 14 C -0.557 4.557 15 C 0.044 3.956 16 C -0.504 4.504 17 H 0.071 0.929 18 C 0.079 3.921 19 N -0.876 5.876 20 Si 0.890 3.110 21 H -0.268 1.268 22 H -0.283 1.283 23 H -0.281 1.281 24 C -0.215 4.215 25 C -0.138 4.138 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.061 0.939 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.052 0.948 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.133 0.867 42 H 0.095 0.905 43 H 0.261 0.739 44 H 0.087 0.913 45 H 0.074 0.926 46 H 0.064 0.936 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.900 10.341 7.621 14.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.239 4.239 3 S -0.045 6.045 4 C -0.246 4.246 5 C -0.152 4.152 6 C 0.040 3.960 7 H 0.118 0.882 8 C -0.216 4.216 9 N -0.844 5.844 10 C -0.062 4.062 11 S 2.700 3.300 12 O -0.967 6.967 13 O -0.930 6.930 14 C -0.690 4.690 15 C 0.042 3.958 16 C -0.541 4.541 17 H 0.089 0.911 18 C -0.125 4.125 19 N -0.512 5.512 20 Si 0.717 3.283 21 H -0.192 1.192 22 H -0.210 1.210 23 H -0.207 1.207 24 C -0.252 4.252 25 C -0.177 4.177 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.106 0.894 30 H 0.099 0.901 31 H 0.111 0.889 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.088 0.912 40 H 0.103 0.897 41 H 0.151 0.849 42 H 0.113 0.887 43 H 0.071 0.929 44 H 0.106 0.894 45 H 0.092 0.908 46 H 0.083 0.917 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.721 11.226 7.504 15.083 hybrid contribution 0.194 -1.678 -0.918 1.922 sum -6.527 9.548 6.586 13.310 Atomic orbital electron populations 1.21498 0.92408 1.02503 1.02837 1.23325 0.99956 0.95036 1.05567 1.86604 1.06129 1.13588 1.98195 1.23679 0.93041 1.02052 1.05785 1.21755 0.94506 0.95079 1.03877 1.20849 0.92626 0.95909 0.86627 0.88191 1.22074 1.01420 0.96069 1.01990 1.57884 1.76908 1.38656 1.10963 1.21495 1.01711 0.98490 0.84484 1.05354 0.76747 0.73850 0.74093 1.93487 1.73412 1.86321 1.43435 1.93540 1.66898 1.85045 1.47467 1.30164 1.16517 1.14052 1.08273 1.18321 0.98755 0.86378 0.92392 1.20580 0.93823 1.47502 0.92210 0.91129 1.24919 0.94760 0.94485 0.98316 1.70011 1.06525 1.43907 1.30795 0.86547 0.80955 0.77895 0.82866 1.19207 1.20955 1.20706 1.23256 0.99065 1.06443 0.96480 1.22513 0.92437 1.00242 1.02503 0.91769 0.91110 0.91971 0.89411 0.90125 0.88865 0.90036 0.90085 0.90193 0.91611 0.91802 0.92032 0.92973 0.91190 0.89668 0.84881 0.88685 0.92911 0.89400 0.90770 0.91739 0.89479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.30 9.92 37.16 0.37 -0.93 16 2 C -0.09 -1.06 6.66 37.16 0.25 -0.81 16 3 S -0.27 -3.41 21.74 -107.50 -2.34 -5.75 16 4 C -0.10 -1.23 5.05 37.16 0.19 -1.04 16 5 C -0.11 -1.23 4.65 -26.73 -0.12 -1.36 16 6 C 0.15 1.86 2.58 -67.93 -0.18 1.68 16 7 H 0.10 1.33 6.87 -51.93 -0.36 0.97 16 8 C -0.16 -1.64 9.17 37.16 0.34 -1.30 16 9 N -1.01 -15.26 2.46 -114.61 -0.28 -15.54 16 10 C 0.08 1.12 9.60 59.85 0.57 1.70 16 11 S 2.60 52.04 5.32 -107.50 -0.57 51.47 16 12 O -0.98 -20.77 16.57 -57.54 -0.95 -21.72 16 13 O -0.94 -22.20 15.55 -57.54 -0.89 -23.10 16 14 C -0.56 -11.35 4.56 37.16 0.17 -11.18 16 15 C 0.04 1.04 1.34 -155.66 -0.21 0.83 16 16 C -0.50 -13.54 7.63 -34.44 -0.26 -13.80 16 17 H 0.07 1.97 7.82 -52.49 -0.41 1.56 16 18 C 0.08 2.13 5.39 -17.82 -0.10 2.03 16 19 N -0.88 -23.55 12.93 55.43 0.72 -22.83 16 20 Si 0.89 21.22 29.55 -169.99 -5.02 16.19 16 21 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 C -0.22 -4.62 9.96 -26.70 -0.27 -4.89 16 25 C -0.14 -3.06 9.44 -26.69 -0.25 -3.31 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.09 1.13 8.14 -51.92 -0.42 0.71 16 30 H 0.08 0.90 8.14 -51.92 -0.42 0.47 16 31 H 0.09 1.31 5.26 -51.92 -0.27 1.03 16 32 H 0.08 0.99 8.04 -51.93 -0.42 0.57 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.08 0.86 7.51 -51.93 -0.39 0.47 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.74 8.14 -51.92 -0.42 0.31 16 37 H 0.06 0.57 6.66 -51.93 -0.35 0.23 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.73 6.43 -51.93 -0.33 0.40 16 40 H 0.08 1.27 6.91 -51.93 -0.36 0.91 16 41 H 0.13 2.82 7.90 -51.92 -0.41 2.41 16 42 H 0.09 1.66 6.62 -51.93 -0.34 1.31 16 43 H 0.26 6.72 8.32 -40.82 -0.34 6.38 16 44 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 45 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 46 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 47 H 0.09 2.05 8.14 -51.93 -0.42 1.62 16 LS Contribution 395.55 15.07 5.96 5.96 Total: -1.00 -31.06 395.55 -11.15 -42.20 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -8.27 Total: 5.50 kcal Atomic # 6 Polarization: -32.89 SS G_CDS: 0.50 Total: -32.38 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: 0.44 Total: -38.37 kcal Atomic # 8 Polarization: -42.97 SS G_CDS: -1.85 Total: -44.82 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: 48.63 SS G_CDS: -2.91 Total: 45.72 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.06 -11.15 -42.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451264463.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.475 kcal (2) G-P(sol) polarization free energy of solvation -31.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds