Wall clock time and date at job start Tue Mar 31 2020 18:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 S 1.81393 * 109.47347 * 2 1 4 4 C 1.81396 * 103.00068 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.47162 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47035 * 180.02562 * 5 4 3 7 7 H 1.08998 * 109.47645 * 305.00563 * 6 5 4 8 8 C 1.53001 * 109.47140 * 185.00246 * 6 5 4 9 9 N 1.46500 * 109.47447 * 65.00244 * 6 5 4 10 10 C 1.46508 * 119.99716 * 59.99668 * 9 6 5 11 11 S 1.65601 * 120.00413 * 240.00349 * 9 6 5 12 12 O 1.42104 * 104.27514 * 333.92415 * 11 9 6 13 13 O 1.42096 * 104.27563 * 206.06660 * 11 9 6 14 14 C 1.81399 * 104.44966 * 89.99362 * 11 9 6 15 15 C 1.53000 * 109.46950 * 173.49715 * 14 11 9 16 16 C 1.50711 * 115.54887 * 295.20430 * 15 14 11 17 17 H 1.07999 * 119.99791 * 95.14613 * 16 15 14 18 18 C 1.37870 * 119.99613 * 274.87279 * 16 15 14 19 19 N 1.31509 * 120.00621 * 6.47988 * 18 16 15 20 20 Si 1.86812 * 119.99658 * 186.47604 * 18 16 15 21 21 H 1.48504 * 109.46853 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47005 * 119.99861 * 20 18 16 23 23 H 1.48501 * 109.47046 * 240.00295 * 20 18 16 24 24 C 1.52994 * 117.50051 * 80.87192 * 15 14 11 25 25 C 1.53001 * 117.49974 * 149.53522 * 15 14 11 26 26 H 1.08999 * 109.46916 * 59.99490 * 1 2 3 27 27 H 1.08996 * 109.47185 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46611 * 299.99926 * 1 2 3 29 29 H 1.09006 * 109.46611 * 240.00074 * 2 1 3 30 30 H 1.08999 * 109.46916 * 120.00510 * 2 1 3 31 31 H 1.09009 * 109.46974 * 60.00377 * 4 3 2 32 32 H 1.08997 * 109.47366 * 300.00357 * 4 3 2 33 33 H 1.08997 * 109.46843 * 60.00806 * 5 4 3 34 34 H 1.08997 * 109.47367 * 300.00473 * 5 4 3 35 35 H 1.08999 * 109.46743 * 60.00377 * 8 6 5 36 36 H 1.09008 * 109.47179 * 179.97438 * 8 6 5 37 37 H 1.08996 * 109.46984 * 299.99881 * 8 6 5 38 38 H 1.09002 * 109.47067 * 269.99999 * 10 9 6 39 39 H 1.08993 * 109.47044 * 30.00645 * 10 9 6 40 40 H 1.09002 * 109.46912 * 150.00203 * 10 9 6 41 41 H 1.09002 * 109.46929 * 53.49998 * 14 11 9 42 42 H 1.08997 * 109.47684 * 293.49657 * 14 11 9 43 43 H 0.97003 * 120.00566 * 185.03627 * 19 18 16 44 44 H 1.08997 * 117.50263 * 215.00093 * 24 15 14 45 45 H 1.08998 * 117.49817 * 0.03047 * 24 15 14 46 46 H 1.08997 * 117.49617 * 359.97438 * 25 15 14 47 47 H 1.09002 * 117.49408 * 144.97253 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1348 1.7102 0.0000 4 6 3.9372 1.5057 -0.0008 5 6 4.6066 2.8815 -0.0015 6 6 6.1268 2.7090 -0.0028 7 1 6.4222 2.0824 0.8387 8 6 6.7957 4.0794 0.1222 9 7 6.5452 2.0739 -1.2549 10 6 6.2617 2.7244 -2.5367 11 16 7.3385 0.6206 -1.2216 12 8 7.9709 0.5957 0.0507 13 8 8.1023 0.6108 -2.4198 14 6 6.0161 -0.6188 -1.2994 15 6 6.6313 -2.0127 -1.4388 16 6 7.3924 -2.2626 -2.7154 17 1 8.4634 -2.1261 -2.7410 18 6 6.7220 -2.6710 -3.8488 19 7 5.4079 -2.7198 -3.8540 20 14 7.6807 -3.1548 -5.3775 21 1 9.1354 -3.0141 -5.1146 22 1 7.3755 -4.5654 -5.7273 23 1 7.2931 -2.2700 -6.5055 24 6 7.1452 -2.6886 -0.1661 25 6 5.8615 -3.1883 -0.8336 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8901 29 1 1.8934 -0.5139 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 4.2399 0.9543 -0.8911 32 1 4.2407 0.9540 0.8889 33 1 4.3040 3.4332 0.8885 34 1 4.3031 3.4328 -0.8914 35 1 6.4845 4.5518 1.0539 36 1 7.8788 3.9564 0.1218 37 1 6.5004 4.7059 -0.7193 38 1 5.2909 2.3930 -2.9055 39 1 6.2487 3.8057 -2.4003 40 1 7.0345 2.4584 -3.2579 41 1 5.3779 -0.4156 -2.1594 42 1 5.4216 -0.5736 -0.3870 43 1 4.9387 -3.0758 -4.6248 44 1 8.0338 -3.3140 -0.2520 45 1 7.0447 -2.1404 0.7706 46 1 4.9171 -2.9686 -0.3357 47 1 5.9053 -4.1424 -1.3589 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451264463.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:27 Heat of formation + Delta-G solvation = -79.165378 kcal Electronic energy + Delta-G solvation = -26838.432918 eV Core-core repulsion = 23274.450387 eV Total energy + Delta-G solvation = -3563.982531 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.138 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -38.93246 -38.61867 -38.01756 -36.81642 -34.08368 -33.67701 -33.58434 -31.08371 -29.78467 -27.58651 -27.26327 -25.36940 -23.86264 -23.04868 -21.79283 -21.35791 -19.71430 -18.77980 -18.41855 -17.16403 -17.06734 -16.86629 -16.71153 -16.28258 -15.97684 -15.72573 -15.53657 -15.21299 -14.96228 -14.73634 -14.51907 -13.79634 -13.73056 -13.65784 -13.57374 -13.37354 -13.27940 -13.15593 -12.91989 -12.86355 -12.74161 -12.69267 -12.52321 -12.43235 -12.32710 -12.27047 -12.04129 -11.95543 -11.87737 -11.65836 -11.49809 -10.95889 -10.84593 -10.56489 -10.17169 -9.75198 -8.64824 -8.20176 -6.32336 -0.56597 0.70718 1.35199 1.39766 1.50747 1.62577 1.87727 2.39862 2.95517 3.07792 3.28523 3.35584 3.60466 3.87308 3.95138 4.01143 4.01386 4.08667 4.13627 4.22764 4.32994 4.43193 4.49955 4.52209 4.54450 4.60319 4.71075 4.76886 4.78765 4.87296 4.88635 4.90888 4.91744 4.92426 5.02456 5.09008 5.16270 5.20156 5.29789 5.42325 5.44049 5.54134 5.72330 5.77460 6.21236 6.73399 7.39281 8.87588 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.009839 B = 0.005349 C = 0.004165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2845.274796 B = 5232.984471 C = 6720.946607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.092 4.092 3 S -0.279 6.279 4 C -0.102 4.102 5 C -0.103 4.103 6 C 0.141 3.859 7 H 0.092 0.908 8 C -0.155 4.155 9 N -0.999 5.999 10 C 0.078 3.922 11 S 2.612 3.388 12 O -0.992 6.992 13 O -0.984 6.984 14 C -0.549 4.549 15 C 0.012 3.988 16 C -0.520 4.520 17 H 0.047 0.953 18 C 0.043 3.957 19 N -0.891 5.891 20 Si 0.932 3.068 21 H -0.275 1.275 22 H -0.272 1.272 23 H -0.278 1.278 24 C -0.205 4.205 25 C -0.133 4.133 26 H 0.060 0.940 27 H 0.082 0.918 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.103 0.897 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.049 0.951 37 H 0.076 0.924 38 H 0.059 0.941 39 H 0.106 0.894 40 H 0.064 0.936 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.264 0.736 44 H 0.084 0.916 45 H 0.097 0.903 46 H 0.085 0.915 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.197 11.800 8.706 16.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.240 4.240 3 S -0.052 6.052 4 C -0.250 4.250 5 C -0.143 4.143 6 C 0.034 3.966 7 H 0.110 0.890 8 C -0.214 4.214 9 N -0.838 5.838 10 C -0.067 4.067 11 S 2.711 3.289 12 O -0.983 6.983 13 O -0.974 6.974 14 C -0.682 4.682 15 C 0.010 3.990 16 C -0.557 4.557 17 H 0.065 0.935 18 C -0.160 4.160 19 N -0.528 5.528 20 Si 0.758 3.242 21 H -0.200 1.200 22 H -0.197 1.197 23 H -0.203 1.203 24 C -0.242 4.242 25 C -0.172 4.172 26 H 0.079 0.921 27 H 0.101 0.899 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.104 0.896 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.121 0.879 34 H 0.105 0.895 35 H 0.110 0.890 36 H 0.068 0.932 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.124 0.876 40 H 0.083 0.917 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.073 0.927 44 H 0.103 0.897 45 H 0.115 0.885 46 H 0.104 0.896 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.017 12.669 8.592 17.280 hybrid contribution 0.577 -2.090 -1.211 2.484 sum -7.440 10.579 7.380 14.891 Atomic orbital electron populations 1.21499 0.90907 1.03398 1.03064 1.23395 1.01299 0.94341 1.05005 1.86584 1.06115 1.14370 1.98163 1.23717 0.93271 1.02982 1.05070 1.21722 0.92863 0.94394 1.05287 1.21145 0.93967 0.96700 0.84820 0.88985 1.22094 1.00318 0.94902 1.04082 1.57521 1.76619 1.36844 1.12780 1.21675 1.01321 1.00481 0.83215 1.04699 0.76694 0.74671 0.72863 1.93453 1.74178 1.86927 1.43707 1.93482 1.68670 1.86060 1.49183 1.30011 1.16573 1.12507 1.09080 1.18437 1.00019 0.88380 0.92161 1.20683 0.93087 1.47832 0.94131 0.93479 1.25436 0.95577 0.94743 1.00198 1.70048 1.06982 1.44373 1.31396 0.85906 0.79512 0.78246 0.80576 1.20007 1.19698 1.20327 1.23307 0.98630 1.05749 0.96505 1.22457 0.93648 0.98828 1.02299 0.92053 0.89889 0.91186 0.91051 0.89568 0.90625 0.89695 0.87876 0.89498 0.89019 0.93224 0.90535 0.92215 0.87581 0.91682 0.86053 0.85973 0.92712 0.89726 0.88488 0.89637 0.91387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.31 9.92 71.99 0.71 -1.59 16 2 C -0.09 -2.03 6.66 71.99 0.48 -1.55 16 3 S -0.28 -6.48 21.74 -56.49 -1.23 -7.71 16 4 C -0.10 -2.38 5.05 71.98 0.36 -2.02 16 5 C -0.10 -1.96 4.65 30.59 0.14 -1.82 16 6 C 0.14 3.21 2.58 44.99 0.12 3.32 16 7 H 0.09 2.27 6.87 -2.39 -0.02 2.25 16 8 C -0.16 -2.78 9.17 71.98 0.66 -2.12 16 9 N -1.00 -29.11 2.46 -516.51 -1.27 -30.38 16 10 C 0.08 1.99 9.60 127.77 1.23 3.21 16 11 S 2.61 104.79 5.32 -56.49 -0.30 104.49 16 12 O -0.99 -41.92 16.57 -127.65 -2.12 -44.03 16 13 O -0.98 -47.83 15.55 -127.65 -1.99 -49.82 16 14 C -0.55 -22.31 4.56 71.98 0.33 -21.98 16 15 C 0.01 0.58 1.34 -52.93 -0.07 0.51 16 16 C -0.52 -28.59 7.63 25.60 0.20 -28.40 16 17 H 0.05 2.74 7.82 -2.91 -0.02 2.72 16 18 C 0.04 2.33 5.39 84.65 0.46 2.78 16 19 N -0.89 -48.27 12.93 21.44 0.28 -48.00 16 20 Si 0.93 43.95 29.55 68.60 2.03 45.97 16 21 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 22 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 23 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 24 C -0.20 -8.68 9.96 30.62 0.30 -8.38 16 25 C -0.13 -5.86 9.44 30.62 0.29 -5.57 16 26 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 29 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.08 2.03 5.26 -2.39 -0.01 2.02 16 32 H 0.08 1.89 8.04 -2.39 -0.02 1.87 16 33 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.09 1.57 7.51 -2.39 -0.02 1.56 16 35 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 37 H 0.08 1.14 6.66 -2.39 -0.02 1.12 16 38 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.11 1.92 6.43 -2.39 -0.02 1.91 16 40 H 0.06 1.95 6.91 -2.39 -0.02 1.93 16 41 H 0.12 5.21 7.90 -2.39 -0.02 5.19 16 42 H 0.12 4.14 6.62 -2.39 -0.02 4.13 16 43 H 0.26 13.60 8.32 -92.71 -0.77 12.83 16 44 H 0.08 3.59 8.14 -2.39 -0.02 3.57 16 45 H 0.10 3.63 8.14 -2.39 -0.02 3.61 16 46 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 47 H 0.07 3.22 8.14 -2.39 -0.02 3.20 16 Total: -1.00 -67.34 395.55 1.54 -65.80 By element: Atomic # 1 Polarization: 26.34 SS G_CDS: 0.93 Total: 27.26 kcal Atomic # 6 Polarization: -68.80 SS G_CDS: 5.21 Total: -63.60 kcal Atomic # 7 Polarization: -77.38 SS G_CDS: -0.99 Total: -78.37 kcal Atomic # 8 Polarization: -89.75 SS G_CDS: -4.10 Total: -93.85 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Atomic # 16 Polarization: 98.30 SS G_CDS: -1.53 Total: 96.78 kcal Total: -67.34 1.54 -65.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451264463.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.366 kcal (2) G-P(sol) polarization free energy of solvation -67.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds