Wall clock time and date at job start Tue Mar 31 2020 18:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.42898 * 113.99738 * 2 1 4 4 C 1.52999 * 109.46716 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.47525 * 64.99963 * 4 3 2 6 6 C 1.36932 * 119.99592 * 271.05426 * 5 4 3 7 7 H 1.08001 * 120.00040 * 146.13954 * 6 5 4 8 8 C 1.38809 * 120.00374 * 326.13910 * 6 5 4 9 9 N 1.31623 * 119.99758 * 336.82331 * 8 6 5 10 10 Si 1.86799 * 120.00332 * 156.81714 * 8 6 5 11 11 H 1.48496 * 109.47115 * 60.00006 * 10 8 6 12 12 H 1.48495 * 109.47301 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.46894 * 300.00207 * 10 8 6 14 14 C 1.46499 * 119.99918 * 91.04888 * 5 4 3 15 15 C 1.50707 * 109.47065 * 270.00061 * 14 5 4 16 16 N 1.31130 * 126.54781 * 90.00372 * 15 14 5 17 17 C 1.34492 * 105.61390 * 180.02562 * 16 15 14 18 18 C 1.50700 * 126.28885 * 179.97438 * 17 16 15 19 19 C 1.50702 * 109.47226 * 90.00116 * 18 17 16 20 20 C 1.38260 * 119.99075 * 90.00062 * 19 18 17 21 21 C 1.38217 * 120.05656 * 180.02562 * 20 19 18 22 22 C 1.38222 * 120.02615 * 0.24888 * 21 20 19 23 23 C 1.38441 * 119.96958 * 359.47721 * 22 21 20 24 24 F 1.35100 * 120.02842 * 180.25454 * 23 22 21 25 25 C 1.38179 * 119.98707 * 270.02501 * 19 18 17 26 26 N 1.29945 * 107.42650 * 0.23915 * 17 16 15 27 27 O 1.21302 * 110.24640 * 359.58505 * 26 17 16 28 28 H 1.08999 * 109.46813 * 300.00138 * 1 2 3 29 29 H 1.09001 * 109.46798 * 59.99967 * 1 2 3 30 30 H 1.08994 * 109.47001 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47273 * 59.99797 * 3 2 1 32 32 H 1.09008 * 109.46946 * 299.99674 * 3 2 1 33 33 H 1.08997 * 109.47274 * 304.99341 * 4 3 2 34 34 H 1.09006 * 109.47121 * 184.99840 * 4 3 2 35 35 H 0.97006 * 119.99662 * 180.02562 * 9 8 6 36 36 H 1.09004 * 109.46644 * 150.00694 * 14 5 4 37 37 H 1.08997 * 109.47215 * 30.00428 * 14 5 4 38 38 H 1.09005 * 109.46925 * 330.00012 * 18 17 16 39 39 H 1.08998 * 109.47461 * 209.99947 * 18 17 16 40 40 H 1.08005 * 119.97366 * 359.97438 * 20 19 18 41 41 H 1.08002 * 119.99386 * 179.97438 * 21 20 19 42 42 H 1.07996 * 120.01557 * 179.72455 * 22 21 20 43 43 H 1.08004 * 120.01211 * 359.97438 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9768 0.5639 -1.2509 6 6 4.0772 -0.7988 -1.3410 7 1 3.8593 -1.2957 -2.2748 8 6 4.4590 -1.5415 -0.2322 9 7 5.1477 -0.9735 0.7349 10 14 3.9952 -3.3470 -0.1126 11 1 4.5826 -4.0860 -1.2589 12 1 4.5171 -3.9090 1.1590 13 1 2.5165 -3.4813 -0.1425 14 6 4.3106 1.4011 -2.4059 15 6 3.0761 1.6178 -3.2427 16 7 2.2086 2.5930 -3.1167 17 6 1.2832 2.3797 -4.0691 18 6 0.0685 3.2299 -4.3387 19 6 0.4177 4.3024 -5.3382 20 6 0.2644 4.0626 -6.6912 21 6 0.5848 5.0451 -7.6090 22 6 1.0638 6.2670 -7.1754 23 6 1.2123 6.5103 -5.8206 24 9 1.6755 7.7060 -5.3953 25 6 0.8915 5.5249 -4.9020 26 7 1.6259 1.3028 -4.7104 27 8 2.6559 0.8525 -4.2545 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8464 -0.8901 33 1 3.8508 0.5686 0.8427 34 1 3.9785 2.1765 0.0902 35 1 5.4149 -1.4926 1.5096 36 1 5.0736 0.9050 -3.0057 37 1 4.6887 2.3631 -2.0601 38 1 -0.2642 3.6932 -3.4098 39 1 -0.7301 2.6057 -4.7398 40 1 -0.1052 3.1064 -7.0312 41 1 0.4651 4.8565 -8.6657 42 1 1.3183 7.0330 -7.8929 43 1 1.0111 5.7121 -3.8451 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459528636.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:32 Heat of formation + Delta-G solvation = 29.037522 kcal Electronic energy + Delta-G solvation = -28993.505096 eV Core-core repulsion = 24764.850218 eV Total energy + Delta-G solvation = -4228.654878 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.06007 -44.94140 -39.40899 -37.31300 -35.77380 -35.50579 -33.36412 -31.99512 -31.03793 -30.71193 -29.13950 -27.76139 -26.49216 -25.69789 -23.59329 -23.13453 -22.95259 -22.08223 -21.03431 -20.21529 -17.75383 -17.37672 -16.82280 -16.76824 -16.50670 -16.37246 -15.77217 -15.74471 -15.11134 -14.76598 -14.63718 -14.39153 -14.18907 -13.91719 -13.70865 -13.61237 -13.49027 -13.30397 -12.47851 -12.33382 -12.12187 -11.97424 -11.79912 -11.62271 -11.46346 -11.17136 -10.99543 -10.89520 -10.78902 -10.72599 -10.49707 -10.21493 -10.09701 -9.79637 -9.42566 -9.22477 -8.91451 -8.77827 -8.56403 -6.86913 -5.87382 -3.42742 0.86714 0.96629 1.76577 2.71478 3.29178 3.40390 3.46199 3.53886 3.57829 3.98417 4.13796 4.38302 4.44007 4.48490 4.63028 4.68170 4.80387 4.95156 5.09620 5.23476 5.30585 5.38877 5.41454 5.53108 5.73040 5.75205 5.79180 5.85258 5.88108 6.02955 6.04928 6.06518 6.16717 6.20519 6.24942 6.33593 6.40224 6.56203 6.58665 6.61830 6.65317 7.58282 7.76997 8.03566 8.39806 8.73655 9.03728 9.67928 10.15266 11.15268 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.018652 B = 0.002950 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.851375 B = 9489.624351 C = 9520.319829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.355 6.355 3 C 0.040 3.960 4 C 0.136 3.864 5 N -0.551 5.551 6 C -0.262 4.262 7 H 0.064 0.936 8 C 0.030 3.970 9 N -0.885 5.885 10 Si 0.903 3.097 11 H -0.282 1.282 12 H -0.292 1.292 13 H -0.280 1.280 14 C 0.216 3.784 15 C 0.200 3.800 16 N -0.499 5.499 17 C 0.159 3.841 18 C 0.015 3.985 19 C -0.051 4.051 20 C -0.117 4.117 21 C -0.092 4.092 22 C -0.155 4.155 23 C 0.097 3.903 24 F -0.140 7.140 25 C -0.135 4.135 26 N -0.397 5.397 27 O 0.073 5.927 28 H 0.027 0.973 29 H 0.024 0.976 30 H 0.074 0.926 31 H 0.024 0.976 32 H 0.041 0.959 33 H 0.114 0.886 34 H 0.047 0.953 35 H 0.257 0.743 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.103 0.897 39 H 0.099 0.901 40 H 0.131 0.869 41 H 0.133 0.867 42 H 0.134 0.866 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.144 12.025 -10.635 18.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.273 6.273 3 C -0.039 4.039 4 C 0.011 3.989 5 N -0.269 5.269 6 C -0.391 4.391 7 H 0.082 0.918 8 C -0.171 4.171 9 N -0.527 5.527 10 Si 0.732 3.268 11 H -0.208 1.208 12 H -0.218 1.218 13 H -0.206 1.206 14 C 0.084 3.916 15 C -0.023 4.023 16 N -0.234 5.234 17 C -0.114 4.114 18 C -0.023 4.023 19 C -0.053 4.053 20 C -0.135 4.135 21 C -0.110 4.110 22 C -0.174 4.174 23 C 0.078 3.922 24 F -0.118 7.118 25 C -0.154 4.154 26 N -0.108 5.108 27 O 0.017 5.983 28 H 0.046 0.954 29 H 0.043 0.957 30 H 0.092 0.908 31 H 0.042 0.958 32 H 0.059 0.941 33 H 0.131 0.869 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.109 0.891 37 H 0.106 0.894 38 H 0.121 0.879 39 H 0.118 0.882 40 H 0.149 0.851 41 H 0.151 0.849 42 H 0.152 0.848 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -9.524 11.826 -10.888 18.685 hybrid contribution -0.580 -0.476 0.282 0.802 sum -10.104 11.350 -10.606 18.532 Atomic orbital electron populations 1.22592 0.84336 1.01342 0.98234 1.88206 1.16467 1.27735 1.94868 1.23414 0.98468 0.84216 0.97800 1.21289 0.87975 0.97043 0.92639 1.43818 1.73434 1.02968 1.06634 1.18897 1.41284 0.80563 0.98351 0.91784 1.24920 0.96141 0.98138 0.97884 1.69939 1.35598 1.36636 1.10512 0.86377 0.79003 0.84559 0.76818 1.20808 1.21766 1.20574 1.19686 0.85493 0.97789 0.88659 1.31804 0.99782 0.83717 0.87027 1.71822 1.04173 1.25185 1.22210 1.25295 0.99349 0.94094 0.92622 1.18755 0.91238 0.93063 0.99264 1.19460 0.98116 0.93600 0.94090 1.21178 1.00424 0.99706 0.92220 1.20986 0.97624 0.92325 1.00077 1.21168 1.03102 0.99186 0.93946 1.17670 0.99963 0.81760 0.92851 1.91505 1.86331 1.43308 1.90700 1.21105 1.01084 0.92784 1.00455 1.74498 1.00950 1.13133 1.22249 1.85285 1.28446 1.45901 1.38651 0.95440 0.95746 0.90789 0.95760 0.94102 0.86871 0.93509 0.93305 0.89077 0.89377 0.87874 0.88224 0.85113 0.84880 0.84798 0.84247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 11.01 101.05 1.11 1.69 16 2 O -0.35 -8.04 10.13 -35.23 -0.36 -8.40 16 3 C 0.04 0.83 6.28 37.16 0.23 1.06 16 4 C 0.14 3.04 5.78 -4.04 -0.02 3.01 16 5 N -0.55 -12.69 2.42 -174.60 -0.42 -13.11 16 6 C -0.26 -6.80 8.93 -15.06 -0.13 -6.94 16 7 H 0.06 1.70 7.93 -52.49 -0.42 1.28 16 8 C 0.03 0.79 4.96 -17.43 -0.09 0.71 16 9 N -0.89 -24.17 11.31 55.49 0.63 -23.54 16 10 Si 0.90 21.66 29.61 -169.99 -5.03 16.62 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 13 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 14 C 0.22 4.12 6.33 -5.19 -0.03 4.09 16 15 C 0.20 3.81 7.71 -13.05 -0.10 3.71 16 16 N -0.50 -9.05 10.25 -9.87 -0.10 -9.15 16 17 C 0.16 2.65 7.45 -156.38 -1.17 1.49 16 18 C 0.02 0.19 5.97 -29.03 -0.17 0.02 16 19 C -0.05 -0.60 5.11 -104.63 -0.54 -1.13 16 20 C -0.12 -1.21 9.70 -39.58 -0.38 -1.59 16 21 C -0.09 -0.83 10.04 -39.59 -0.40 -1.23 16 22 C -0.16 -1.50 10.03 -39.51 -0.40 -1.90 16 23 C 0.10 1.11 7.30 -39.42 -0.29 0.82 16 24 F -0.14 -1.70 17.27 2.25 0.04 -1.67 16 25 C -0.14 -1.59 9.68 -39.51 -0.38 -1.98 16 26 N -0.40 -7.30 12.16 30.89 0.38 -6.93 16 27 O 0.07 1.43 11.31 18.12 0.20 1.63 16 28 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.04 0.84 6.34 -51.92 -0.33 0.51 16 33 H 0.11 2.90 5.31 -51.93 -0.28 2.62 16 34 H 0.05 0.94 7.88 -51.93 -0.41 0.53 16 35 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 36 H 0.09 1.64 8.04 -51.93 -0.42 1.23 16 37 H 0.09 1.50 7.88 -51.93 -0.41 1.09 16 38 H 0.10 1.14 8.09 -51.93 -0.42 0.72 16 39 H 0.10 1.05 8.09 -51.93 -0.42 0.63 16 40 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 41 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 42 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 43 H 0.14 1.59 8.06 -52.48 -0.42 1.16 16 LS Contribution 374.73 15.07 5.65 5.65 Total: -1.00 -30.06 374.73 -7.39 -37.44 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -5.61 Total: -0.37 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: -2.75 Total: 1.83 kcal Atomic # 7 Polarization: -53.21 SS G_CDS: 0.48 Total: -52.73 kcal Atomic # 8 Polarization: -6.61 SS G_CDS: -0.15 Total: -6.77 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.06 -7.39 -37.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459528636.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.482 kcal (2) G-P(sol) polarization free energy of solvation -30.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds