Wall clock time and date at job start Tue Mar 31 2020 18:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.42898 * 113.99738 * 2 1 4 4 C 1.52999 * 109.46716 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.47525 * 64.99963 * 4 3 2 6 6 C 1.36932 * 119.99592 * 271.05426 * 5 4 3 7 7 H 1.08001 * 120.00040 * 146.13954 * 6 5 4 8 8 C 1.38809 * 120.00374 * 326.13910 * 6 5 4 9 9 N 1.31623 * 119.99758 * 336.82331 * 8 6 5 10 10 Si 1.86799 * 120.00332 * 156.81714 * 8 6 5 11 11 H 1.48496 * 109.47115 * 60.00006 * 10 8 6 12 12 H 1.48495 * 109.47301 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.46894 * 300.00207 * 10 8 6 14 14 C 1.46499 * 119.99918 * 91.04888 * 5 4 3 15 15 C 1.50707 * 109.47065 * 270.00061 * 14 5 4 16 16 N 1.31130 * 126.54781 * 90.00372 * 15 14 5 17 17 C 1.34492 * 105.61390 * 180.02562 * 16 15 14 18 18 C 1.50700 * 126.28885 * 179.97438 * 17 16 15 19 19 C 1.50702 * 109.47226 * 90.00116 * 18 17 16 20 20 C 1.38260 * 119.99075 * 90.00062 * 19 18 17 21 21 C 1.38217 * 120.05656 * 180.02562 * 20 19 18 22 22 C 1.38222 * 120.02615 * 0.24888 * 21 20 19 23 23 C 1.38441 * 119.96958 * 359.47721 * 22 21 20 24 24 F 1.35100 * 120.02842 * 180.25454 * 23 22 21 25 25 C 1.38179 * 119.98707 * 270.02501 * 19 18 17 26 26 N 1.29945 * 107.42650 * 0.23915 * 17 16 15 27 27 O 1.21302 * 110.24640 * 359.58505 * 26 17 16 28 28 H 1.08999 * 109.46813 * 300.00138 * 1 2 3 29 29 H 1.09001 * 109.46798 * 59.99967 * 1 2 3 30 30 H 1.08994 * 109.47001 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47273 * 59.99797 * 3 2 1 32 32 H 1.09008 * 109.46946 * 299.99674 * 3 2 1 33 33 H 1.08997 * 109.47274 * 304.99341 * 4 3 2 34 34 H 1.09006 * 109.47121 * 184.99840 * 4 3 2 35 35 H 0.97006 * 119.99662 * 180.02562 * 9 8 6 36 36 H 1.09004 * 109.46644 * 150.00694 * 14 5 4 37 37 H 1.08997 * 109.47215 * 30.00428 * 14 5 4 38 38 H 1.09005 * 109.46925 * 330.00012 * 18 17 16 39 39 H 1.08998 * 109.47461 * 209.99947 * 18 17 16 40 40 H 1.08005 * 119.97366 * 359.97438 * 20 19 18 41 41 H 1.08002 * 119.99386 * 179.97438 * 21 20 19 42 42 H 1.07996 * 120.01557 * 179.72455 * 22 21 20 43 43 H 1.08004 * 120.01211 * 359.97438 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9768 0.5639 -1.2509 6 6 4.0772 -0.7988 -1.3410 7 1 3.8593 -1.2957 -2.2748 8 6 4.4590 -1.5415 -0.2322 9 7 5.1477 -0.9735 0.7349 10 14 3.9952 -3.3470 -0.1126 11 1 4.5826 -4.0860 -1.2589 12 1 4.5171 -3.9090 1.1590 13 1 2.5165 -3.4813 -0.1425 14 6 4.3106 1.4011 -2.4059 15 6 3.0761 1.6178 -3.2427 16 7 2.2086 2.5930 -3.1167 17 6 1.2832 2.3797 -4.0691 18 6 0.0685 3.2299 -4.3387 19 6 0.4177 4.3024 -5.3382 20 6 0.2644 4.0626 -6.6912 21 6 0.5848 5.0451 -7.6090 22 6 1.0638 6.2670 -7.1754 23 6 1.2123 6.5103 -5.8206 24 9 1.6755 7.7060 -5.3953 25 6 0.8915 5.5249 -4.9020 26 7 1.6259 1.3028 -4.7104 27 8 2.6559 0.8525 -4.2545 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8464 -0.8901 33 1 3.8508 0.5686 0.8427 34 1 3.9785 2.1765 0.0902 35 1 5.4149 -1.4926 1.5096 36 1 5.0736 0.9050 -3.0057 37 1 4.6887 2.3631 -2.0601 38 1 -0.2642 3.6932 -3.4098 39 1 -0.7301 2.6057 -4.7398 40 1 -0.1052 3.1064 -7.0312 41 1 0.4651 4.8565 -8.6657 42 1 1.3183 7.0330 -7.8929 43 1 1.0111 5.7121 -3.8451 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459528636.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:31 Heat of formation + Delta-G solvation = 11.965242 kcal Electronic energy + Delta-G solvation = -28994.245406 eV Core-core repulsion = 24764.850218 eV Total energy + Delta-G solvation = -4229.395187 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.93959 -46.35608 -40.22027 -38.96792 -37.37852 -36.89106 -34.67074 -33.46624 -32.57545 -31.55940 -30.73046 -28.74799 -28.20739 -27.22041 -25.26063 -24.45528 -23.83216 -23.23402 -22.47528 -21.67683 -19.07941 -18.70864 -18.47010 -17.99940 -17.42573 -17.32888 -17.15980 -16.77805 -16.66054 -16.50321 -16.05222 -15.69504 -15.51819 -15.21660 -15.09538 -14.95197 -14.54381 -14.45879 -13.74522 -13.49166 -13.46623 -13.12325 -13.11059 -12.87765 -12.73272 -12.67416 -12.64117 -12.48926 -12.41987 -12.13631 -11.99913 -11.90166 -11.83263 -11.56824 -10.86918 -10.50695 -10.36679 -10.03747 -9.73560 -8.75105 -7.84647 -5.41428 0.03795 0.16769 0.32885 1.35029 1.48671 1.53154 1.60172 2.09364 2.44538 2.56296 2.91031 3.14686 3.17169 3.21735 3.34900 3.60527 3.62450 3.77896 4.06291 4.14080 4.18980 4.30939 4.34880 4.42581 4.44648 4.53347 4.58571 4.61320 4.67005 4.72848 4.75725 4.83719 4.91574 4.94637 5.00944 5.03953 5.09825 5.13294 5.28545 5.43936 5.70315 5.78709 5.86567 6.36764 6.60158 7.11937 7.30581 7.77793 8.23829 9.14638 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.018652 B = 0.002950 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.851375 B = 9489.624351 C = 9520.319829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.395 6.395 3 C 0.048 3.952 4 C 0.136 3.864 5 N -0.565 5.565 6 C -0.259 4.259 7 H 0.052 0.948 8 C -0.009 4.009 9 N -0.907 5.907 10 Si 0.946 3.054 11 H -0.275 1.275 12 H -0.292 1.292 13 H -0.290 1.290 14 C 0.219 3.781 15 C 0.196 3.804 16 N -0.502 5.502 17 C 0.169 3.831 18 C 0.017 3.983 19 C -0.063 4.063 20 C -0.121 4.121 21 C -0.087 4.087 22 C -0.151 4.151 23 C 0.077 3.923 24 F -0.149 7.149 25 C -0.147 4.147 26 N -0.410 5.410 27 O 0.050 5.950 28 H 0.050 0.950 29 H 0.029 0.971 30 H 0.080 0.920 31 H 0.043 0.957 32 H 0.042 0.958 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.253 0.747 36 H 0.097 0.903 37 H 0.110 0.890 38 H 0.114 0.886 39 H 0.118 0.882 40 H 0.142 0.858 41 H 0.165 0.835 42 H 0.156 0.844 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.428 13.008 -12.103 20.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.313 6.313 3 C -0.030 4.030 4 C 0.011 3.989 5 N -0.284 5.284 6 C -0.388 4.388 7 H 0.070 0.930 8 C -0.207 4.207 9 N -0.550 5.550 10 Si 0.775 3.225 11 H -0.201 1.201 12 H -0.218 1.218 13 H -0.217 1.217 14 C 0.088 3.912 15 C -0.028 4.028 16 N -0.237 5.237 17 C -0.104 4.104 18 C -0.022 4.022 19 C -0.065 4.065 20 C -0.139 4.139 21 C -0.105 4.105 22 C -0.170 4.170 23 C 0.058 3.942 24 F -0.127 7.127 25 C -0.166 4.166 26 N -0.124 5.124 27 O -0.001 6.001 28 H 0.069 0.931 29 H 0.048 0.952 30 H 0.099 0.901 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.100 0.900 34 H 0.083 0.917 35 H 0.062 0.938 36 H 0.115 0.885 37 H 0.128 0.872 38 H 0.132 0.868 39 H 0.136 0.864 40 H 0.160 0.840 41 H 0.182 0.818 42 H 0.174 0.826 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -10.796 12.809 -12.373 20.826 hybrid contribution -0.269 -0.680 0.633 0.968 sum -11.066 12.129 -11.739 20.184 Atomic orbital electron populations 1.22746 0.82034 1.02332 0.99578 1.88137 1.19163 1.28883 1.95163 1.23291 0.97249 0.83837 0.98651 1.21207 0.89313 0.97058 0.91369 1.43855 1.74184 1.02476 1.07872 1.18924 1.39957 0.82220 0.97726 0.93013 1.25373 0.96796 1.00477 0.98098 1.70030 1.36884 1.37269 1.10817 0.85702 0.77883 0.82128 0.76806 1.20108 1.21816 1.21684 1.19796 0.85651 0.98295 0.87495 1.31489 0.99900 0.84112 0.87273 1.71845 1.04355 1.24920 1.22601 1.26041 0.99678 0.93527 0.91157 1.18971 0.89809 0.93048 1.00359 1.19418 0.99250 0.93250 0.94545 1.21432 1.00002 1.00571 0.91920 1.21352 0.96202 0.91459 1.01476 1.21490 1.01975 1.00027 0.93506 1.17913 1.00957 0.81576 0.93782 1.91479 1.86586 1.43772 1.90907 1.21154 1.01644 0.93252 1.00518 1.74500 1.00850 1.14055 1.23003 1.85260 1.29214 1.46500 1.39120 0.93131 0.95188 0.90102 0.93853 0.93995 0.90031 0.91746 0.93797 0.88455 0.87201 0.86763 0.86360 0.84002 0.81779 0.82601 0.84647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.01 11.01 113.37 1.25 2.26 16 2 O -0.39 -17.62 10.13 -148.98 -1.51 -19.13 16 3 C 0.05 1.94 6.28 71.98 0.45 2.40 16 4 C 0.14 6.02 5.78 86.38 0.50 6.52 16 5 N -0.57 -25.93 2.42 -706.32 -1.71 -27.64 16 6 C -0.26 -13.50 8.93 84.03 0.75 -12.75 16 7 H 0.05 2.78 7.93 -2.91 -0.02 2.76 16 8 C -0.01 -0.49 4.96 84.86 0.42 -0.07 16 9 N -0.91 -50.18 11.31 21.65 0.24 -49.93 16 10 Si 0.95 44.85 29.61 68.60 2.03 46.88 16 11 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 12 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 13 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 14 C 0.22 8.19 6.33 85.64 0.54 8.73 16 15 C 0.20 7.30 7.71 88.38 0.68 7.98 16 16 N -0.50 -17.58 10.25 -303.22 -3.11 -20.68 16 17 C 0.17 5.38 7.45 138.46 1.03 6.41 16 18 C 0.02 0.37 5.97 29.10 0.17 0.55 16 19 C -0.06 -1.35 5.11 -19.87 -0.10 -1.45 16 20 C -0.12 -2.19 9.70 22.27 0.22 -1.98 16 21 C -0.09 -1.30 10.04 22.26 0.22 -1.08 16 22 C -0.15 -2.55 10.03 22.31 0.22 -2.32 16 23 C 0.08 1.66 7.30 22.38 0.16 1.83 16 24 F -0.15 -3.51 17.27 44.97 0.78 -2.73 16 25 C -0.15 -3.29 9.68 22.31 0.22 -3.07 16 26 N -0.41 -14.63 12.16 -60.34 -0.73 -15.37 16 27 O 0.05 1.95 11.31 74.90 0.85 2.80 16 28 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 31 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.04 1.67 6.34 -2.38 -0.02 1.65 16 33 H 0.08 4.22 5.31 -2.39 -0.01 4.21 16 34 H 0.06 2.54 7.88 -2.38 -0.02 2.52 16 35 H 0.25 13.70 8.31 -92.70 -0.77 12.93 16 36 H 0.10 3.47 8.04 -2.39 -0.02 3.46 16 37 H 0.11 3.60 7.88 -2.39 -0.02 3.58 16 38 H 0.11 2.30 8.09 -2.38 -0.02 2.28 16 39 H 0.12 2.20 8.09 -2.39 -0.02 2.18 16 40 H 0.14 2.22 8.06 -2.91 -0.02 2.19 16 41 H 0.16 1.40 8.06 -2.91 -0.02 1.38 16 42 H 0.16 1.87 8.06 -2.91 -0.02 1.84 16 43 H 0.14 3.02 8.06 -2.91 -0.02 2.99 16 Total: -1.00 -64.36 374.73 4.61 -59.75 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: 1.03 Total: 12.11 kcal Atomic # 6 Polarization: 7.21 SS G_CDS: 6.74 Total: 13.95 kcal Atomic # 7 Polarization: -108.32 SS G_CDS: -5.31 Total: -113.62 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: -0.66 Total: -16.33 kcal Atomic # 9 Polarization: -3.51 SS G_CDS: 0.78 Total: -2.73 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -64.36 4.61 -59.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459528636.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.711 kcal (2) G-P(sol) polarization free energy of solvation -64.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds