Wall clock time and date at job start Tue Mar 31 2020 18:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.45654 * 117.70619 * 2 1 4 4 C 1.53464 * 110.74105 * 157.95544 * 3 2 1 5 5 N 1.47270 * 107.93405 * 46.91495 * 4 3 2 6 6 C 1.34774 * 121.35690 * 118.50964 * 5 4 3 7 7 O 1.21360 * 119.99796 * 1.73398 * 6 5 4 8 8 C 1.49334 * 120.00250 * 181.73181 * 6 5 4 9 9 O 1.21392 * 119.99980 * 353.82313 * 8 6 5 10 10 N 1.34777 * 120.00001 * 173.81914 * 8 6 5 11 11 C 1.39935 * 119.99850 * 179.97438 * 10 8 6 12 12 C 1.40463 * 125.97890 * 359.97438 * 11 10 8 13 13 C 1.35219 * 107.86412 * 179.80642 * 12 11 10 14 14 N 1.34991 * 107.87551 * 0.36119 * 13 12 11 15 15 C 1.46498 * 125.97052 * 179.89784 * 14 13 12 16 16 C 1.50704 * 109.47193 * 124.71431 * 15 14 13 17 17 H 1.08008 * 119.99916 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00073 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99888 * 179.72511 * 18 16 15 20 20 Si 1.86796 * 120.00062 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.46884 * 269.72392 * 20 18 16 22 22 H 1.48498 * 109.47200 * 29.72398 * 20 18 16 23 23 H 1.48496 * 109.47315 * 149.72490 * 20 18 16 24 24 N 1.31272 * 125.97718 * 180.02562 * 11 10 8 25 25 C 1.47049 * 117.29055 * 298.23868 * 5 4 3 26 26 C 1.33379 * 117.70928 * 179.97438 * 2 1 3 27 27 O 1.21287 * 118.48295 * 4.36123 * 26 2 1 28 28 H 1.08999 * 109.47080 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47560 * 300.02275 * 1 2 3 30 30 H 1.09006 * 109.46852 * 60.02394 * 1 2 3 31 31 H 1.09006 * 109.21209 * 278.41170 * 3 2 1 32 32 H 1.09000 * 109.21643 * 37.73591 * 3 2 1 33 33 H 1.08998 * 109.85137 * 287.31542 * 4 3 2 34 34 H 1.09001 * 109.83932 * 166.50016 * 4 3 2 35 35 H 0.96993 * 120.00026 * 0.02562 * 10 8 6 36 36 H 1.07990 * 126.06960 * 0.04496 * 12 11 10 37 37 H 1.07995 * 126.06330 * 180.26115 * 13 12 11 38 38 H 1.08996 * 109.47025 * 4.71712 * 15 14 13 39 39 H 1.09001 * 109.47428 * 244.71386 * 15 14 13 40 40 H 0.96998 * 120.00042 * 180.27389 * 19 18 16 41 41 H 1.09002 * 109.56808 * 162.81156 * 25 5 4 42 42 H 1.08994 * 109.56627 * 283.05001 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1421 1.2895 0.0000 4 6 3.5726 1.1522 0.5387 5 7 4.1973 -0.0054 -0.1234 6 6 5.2936 0.1351 -0.8947 7 8 5.8045 1.2276 -1.0296 8 6 5.8797 -1.0535 -1.5831 9 8 5.4387 -2.1624 -1.3605 10 7 6.8981 -0.8950 -2.4515 11 6 7.4476 -2.0089 -3.0961 12 6 7.0379 -3.3424 -2.9325 13 6 7.8111 -4.1146 -3.7290 14 7 8.6839 -3.3071 -4.3681 15 6 9.7067 -3.7327 -5.3266 16 6 9.5305 -2.9766 -6.6182 17 1 8.7362 -2.2511 -6.7152 18 6 10.3832 -3.2108 -7.6761 19 7 10.2260 -2.5549 -8.8051 20 14 11.7564 -4.4660 -7.5086 21 1 12.9803 -3.7958 -7.0006 22 1 11.3426 -5.5284 -6.5570 23 1 12.0379 -5.0717 -8.8348 24 7 8.4368 -1.9903 -3.9589 25 6 3.5799 -1.3219 0.0960 26 6 2.0851 -1.1808 0.0005 27 8 1.4130 -2.1872 -0.0801 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5142 0.8898 30 1 -0.3633 0.5135 -0.8903 31 1 2.1756 1.6771 -1.0183 32 1 1.5883 1.9856 0.6299 33 1 3.5483 0.9907 1.6163 34 1 4.1407 2.0550 0.3141 35 1 7.2506 -0.0090 -2.6291 36 1 6.2436 -3.6890 -2.2882 37 1 7.7436 -5.1873 -3.8338 38 1 9.6060 -4.8016 -5.5147 39 1 10.6960 -3.5274 -4.9175 40 1 10.8234 -2.7226 -9.5506 41 1 3.9299 -2.0206 -0.6638 42 1 3.8509 -1.6919 1.0848 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000531499669.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:22 Heat of formation + Delta-G solvation = 27.624073 kcal Electronic energy + Delta-G solvation = -28289.748219 eV Core-core repulsion = 24080.952011 eV Total energy + Delta-G solvation = -4208.796208 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.64988 -40.80233 -40.04256 -38.73233 -36.96435 -35.77511 -34.75812 -33.34881 -31.40287 -30.85528 -29.58291 -29.19036 -27.57128 -26.25051 -25.52771 -23.85842 -22.48379 -21.45629 -20.41259 -19.92663 -19.20733 -18.23090 -17.73552 -17.12077 -16.88014 -16.70224 -16.67030 -16.25018 -16.05492 -15.52442 -15.25986 -14.91142 -14.63084 -14.41721 -13.94637 -13.84609 -13.62346 -13.29135 -13.14128 -13.05167 -12.66581 -12.60248 -12.49198 -12.47220 -12.12811 -11.98314 -11.54061 -11.23390 -10.93347 -10.71476 -10.64475 -10.18820 -10.06121 -9.61418 -9.44576 -9.36973 -9.16907 -8.80354 -8.37029 -7.72759 -6.26837 -4.29972 0.95631 1.68756 2.20595 2.44633 2.50375 2.82795 2.83453 3.13841 3.18392 3.21920 3.49195 3.51001 3.93270 4.04693 4.17422 4.19643 4.51197 4.64949 4.89555 4.94798 5.00213 5.03402 5.03777 5.20051 5.25830 5.29605 5.48133 5.51328 5.60675 5.87076 5.96564 6.20568 6.27574 6.37136 6.45730 6.55593 6.92032 7.02646 7.10850 7.21531 7.40383 7.68145 7.69873 7.76037 8.26722 8.39289 8.82081 9.27374 10.85732 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.024453 B = 0.002227 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.780809 B =12570.333299 C =12875.604135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.611 5.611 3 C 0.100 3.900 4 C 0.094 3.906 5 N -0.591 5.591 6 C 0.525 3.475 7 O -0.507 6.507 8 C 0.516 3.484 9 O -0.491 6.491 10 N -0.591 5.591 11 C 0.250 3.750 12 C -0.280 4.280 13 C 0.055 3.945 14 N -0.313 5.313 15 C 0.231 3.769 16 C -0.537 4.537 17 H 0.086 0.914 18 C 0.077 3.923 19 N -0.886 5.886 20 Si 0.875 3.125 21 H -0.271 1.271 22 H -0.265 1.265 23 H -0.280 1.280 24 N -0.285 5.285 25 C 0.059 3.941 26 C 0.510 3.490 27 O -0.539 6.539 28 H 0.093 0.907 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.118 0.882 35 H 0.425 0.575 36 H 0.164 0.836 37 H 0.172 0.828 38 H 0.056 0.944 39 H 0.040 0.960 40 H 0.269 0.731 41 H 0.179 0.821 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.664 6.312 21.383 27.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.345 5.345 3 C -0.023 4.023 4 C -0.028 4.028 5 N -0.327 5.327 6 C 0.307 3.693 7 O -0.381 6.381 8 C 0.297 3.703 9 O -0.366 6.366 10 N -0.239 5.239 11 C -0.003 4.003 12 C -0.311 4.311 13 C -0.094 4.094 14 N -0.095 5.095 15 C 0.112 3.888 16 C -0.575 4.575 17 H 0.104 0.896 18 C -0.127 4.127 19 N -0.523 5.523 20 Si 0.701 3.299 21 H -0.197 1.197 22 H -0.189 1.189 23 H -0.206 1.206 24 N -0.115 5.115 25 C -0.065 4.065 26 C 0.298 3.702 27 O -0.416 6.416 28 H 0.112 0.888 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.111 0.889 33 H 0.106 0.894 34 H 0.136 0.864 35 H 0.263 0.737 36 H 0.182 0.818 37 H 0.190 0.810 38 H 0.073 0.927 39 H 0.057 0.943 40 H 0.079 0.921 41 H 0.195 0.805 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -15.004 6.316 20.500 26.178 hybrid contribution 0.308 -0.453 0.236 0.596 sum -14.696 5.863 20.736 26.083 Atomic orbital electron populations 1.21821 0.79297 1.04952 1.01419 1.47174 1.07842 1.05962 1.73480 1.21865 0.92751 0.84972 1.02761 1.22238 0.92269 0.90784 0.97505 1.47948 1.27582 1.09528 1.47649 1.19779 0.80965 0.88831 0.79708 1.90808 1.59580 1.26633 1.61073 1.19840 0.80787 0.89233 0.80446 1.90416 1.58156 1.25785 1.62250 1.41963 1.32201 1.09932 1.39788 1.18999 0.96947 0.87166 0.97179 1.21543 1.08772 0.90158 1.10658 1.22596 0.92881 0.98204 0.95747 1.48724 1.26718 1.02025 1.32048 1.20121 0.85019 0.96340 0.87339 1.21092 1.17748 1.24369 0.94323 0.89598 1.24834 0.97131 0.95854 0.94914 1.69869 1.38166 1.40956 1.03295 0.86886 0.82923 0.81858 0.78249 1.19669 1.18946 1.20554 1.77473 1.17837 1.00467 1.15765 1.23240 0.88013 0.86395 1.08817 1.20454 0.90865 0.83038 0.75884 1.90756 1.65318 1.35569 1.49911 0.88849 0.92015 0.92062 0.90815 0.88897 0.89360 0.86382 0.73680 0.81834 0.81031 0.92678 0.94253 0.92109 0.80540 0.87303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.43 10.43 59.84 0.62 1.06 16 2 N -0.61 -4.80 3.20 -182.47 -0.58 -5.38 16 3 C 0.10 0.50 6.60 -4.26 -0.03 0.47 16 4 C 0.09 0.53 6.56 -3.38 -0.02 0.51 16 5 N -0.59 -5.23 2.97 -174.41 -0.52 -5.75 16 6 C 0.52 5.93 7.78 -11.64 -0.09 5.84 16 7 O -0.51 -6.41 15.97 5.49 0.09 -6.32 16 8 C 0.52 6.91 7.77 -11.64 -0.09 6.81 16 9 O -0.49 -6.94 10.21 5.46 0.06 -6.88 16 10 N -0.59 -8.98 5.43 -11.58 -0.06 -9.05 16 11 C 0.25 4.71 8.10 -154.55 -1.25 3.46 16 12 C -0.28 -4.98 9.60 -39.82 -0.38 -5.36 16 13 C 0.06 0.99 11.43 -17.24 -0.20 0.79 16 14 N -0.31 -6.79 3.67 -62.56 -0.23 -7.02 16 15 C 0.23 5.28 5.33 -5.19 -0.03 5.26 16 16 C -0.54 -14.87 9.79 -34.44 -0.34 -15.20 16 17 H 0.09 2.70 8.06 -52.48 -0.42 2.28 16 18 C 0.08 2.12 5.47 -17.82 -0.10 2.03 16 19 N -0.89 -26.27 13.96 55.43 0.77 -25.50 16 20 Si 0.87 19.81 27.47 -169.99 -4.67 15.14 16 21 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 22 H -0.26 -5.53 6.53 56.52 0.37 -5.16 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 N -0.28 -6.28 12.42 31.41 0.39 -5.89 16 25 C 0.06 0.56 6.13 -5.02 -0.03 0.53 16 26 C 0.51 5.41 7.58 -11.73 -0.09 5.32 16 27 O -0.54 -7.65 15.97 5.55 0.09 -7.56 16 28 H 0.09 0.79 6.59 -51.93 -0.34 0.45 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 0.21 8.07 -51.93 -0.42 -0.21 16 33 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.12 0.65 7.06 -51.93 -0.37 0.28 16 35 H 0.43 5.91 8.31 -40.82 -0.34 5.57 16 36 H 0.16 2.68 5.91 -52.49 -0.31 2.37 16 37 H 0.17 2.40 8.06 -52.49 -0.42 1.97 16 38 H 0.06 1.15 7.12 -51.93 -0.37 0.78 16 39 H 0.04 0.89 7.57 -51.93 -0.39 0.49 16 40 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 41 H 0.18 2.05 4.35 -54.89 -0.24 1.81 16 42 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 354.73 15.07 5.35 5.35 Total: -1.00 -34.98 354.73 -6.25 -41.23 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -4.91 Total: 6.13 kcal Atomic # 6 Polarization: 13.53 SS G_CDS: -2.02 Total: 11.51 kcal Atomic # 7 Polarization: -58.36 SS G_CDS: -0.23 Total: -58.59 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: 0.23 Total: -20.76 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -4.67 Total: 15.14 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.98 -6.25 -41.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531499669.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.851 kcal (2) G-P(sol) polarization free energy of solvation -34.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds