Wall clock time and date at job start Tue Mar 31 2020 18:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.45654 * 117.70619 * 2 1 4 4 C 1.53464 * 110.74105 * 157.95544 * 3 2 1 5 5 N 1.47270 * 107.93405 * 46.91495 * 4 3 2 6 6 C 1.34774 * 121.35690 * 118.50964 * 5 4 3 7 7 O 1.21360 * 119.99796 * 1.73398 * 6 5 4 8 8 C 1.49334 * 120.00250 * 181.73181 * 6 5 4 9 9 O 1.21392 * 119.99980 * 353.82313 * 8 6 5 10 10 N 1.34777 * 120.00001 * 173.81914 * 8 6 5 11 11 C 1.39935 * 119.99850 * 179.97438 * 10 8 6 12 12 C 1.40463 * 125.97890 * 359.97438 * 11 10 8 13 13 C 1.35219 * 107.86412 * 179.80642 * 12 11 10 14 14 N 1.34991 * 107.87551 * 0.36119 * 13 12 11 15 15 C 1.46498 * 125.97052 * 179.89784 * 14 13 12 16 16 C 1.50704 * 109.47193 * 124.71431 * 15 14 13 17 17 H 1.08008 * 119.99916 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00073 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99888 * 179.72511 * 18 16 15 20 20 Si 1.86796 * 120.00062 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.46884 * 269.72392 * 20 18 16 22 22 H 1.48498 * 109.47200 * 29.72398 * 20 18 16 23 23 H 1.48496 * 109.47315 * 149.72490 * 20 18 16 24 24 N 1.31272 * 125.97718 * 180.02562 * 11 10 8 25 25 C 1.47049 * 117.29055 * 298.23868 * 5 4 3 26 26 C 1.33379 * 117.70928 * 179.97438 * 2 1 3 27 27 O 1.21287 * 118.48295 * 4.36123 * 26 2 1 28 28 H 1.08999 * 109.47080 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47560 * 300.02275 * 1 2 3 30 30 H 1.09006 * 109.46852 * 60.02394 * 1 2 3 31 31 H 1.09006 * 109.21209 * 278.41170 * 3 2 1 32 32 H 1.09000 * 109.21643 * 37.73591 * 3 2 1 33 33 H 1.08998 * 109.85137 * 287.31542 * 4 3 2 34 34 H 1.09001 * 109.83932 * 166.50016 * 4 3 2 35 35 H 0.96993 * 120.00026 * 0.02562 * 10 8 6 36 36 H 1.07990 * 126.06960 * 0.04496 * 12 11 10 37 37 H 1.07995 * 126.06330 * 180.26115 * 13 12 11 38 38 H 1.08996 * 109.47025 * 4.71712 * 15 14 13 39 39 H 1.09001 * 109.47428 * 244.71386 * 15 14 13 40 40 H 0.96998 * 120.00042 * 180.27389 * 19 18 16 41 41 H 1.09002 * 109.56808 * 162.81156 * 25 5 4 42 42 H 1.08994 * 109.56627 * 283.05001 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1421 1.2895 0.0000 4 6 3.5726 1.1522 0.5387 5 7 4.1973 -0.0054 -0.1234 6 6 5.2936 0.1351 -0.8947 7 8 5.8045 1.2276 -1.0296 8 6 5.8797 -1.0535 -1.5831 9 8 5.4387 -2.1624 -1.3605 10 7 6.8981 -0.8950 -2.4515 11 6 7.4476 -2.0089 -3.0961 12 6 7.0379 -3.3424 -2.9325 13 6 7.8111 -4.1146 -3.7290 14 7 8.6839 -3.3071 -4.3681 15 6 9.7067 -3.7327 -5.3266 16 6 9.5305 -2.9766 -6.6182 17 1 8.7362 -2.2511 -6.7152 18 6 10.3832 -3.2108 -7.6761 19 7 10.2260 -2.5549 -8.8051 20 14 11.7564 -4.4660 -7.5086 21 1 12.9803 -3.7958 -7.0006 22 1 11.3426 -5.5284 -6.5570 23 1 12.0379 -5.0717 -8.8348 24 7 8.4368 -1.9903 -3.9589 25 6 3.5799 -1.3219 0.0960 26 6 2.0851 -1.1808 0.0005 27 8 1.4130 -2.1872 -0.0801 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5142 0.8898 30 1 -0.3633 0.5135 -0.8903 31 1 2.1756 1.6771 -1.0183 32 1 1.5883 1.9856 0.6299 33 1 3.5483 0.9907 1.6163 34 1 4.1407 2.0550 0.3141 35 1 7.2506 -0.0090 -2.6291 36 1 6.2436 -3.6890 -2.2882 37 1 7.7436 -5.1873 -3.8338 38 1 9.6060 -4.8016 -5.5147 39 1 10.6960 -3.5274 -4.9175 40 1 10.8234 -2.7226 -9.5506 41 1 3.9299 -2.0206 -0.6638 42 1 3.8509 -1.6919 1.0848 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000531499669.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:22 Heat of formation + Delta-G solvation = 0.452074 kcal Electronic energy + Delta-G solvation = -28290.926485 eV Core-core repulsion = 24080.952011 eV Total energy + Delta-G solvation = -4209.974474 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.68455 -41.99409 -41.04366 -39.76956 -37.79041 -36.77195 -35.82985 -35.18626 -33.16155 -31.46092 -31.07179 -29.96848 -29.21065 -27.16550 -26.27748 -24.91099 -24.01630 -22.64404 -21.72260 -21.15016 -20.07846 -19.13347 -19.05946 -18.56305 -18.11262 -17.71083 -17.61117 -17.19209 -16.98435 -16.71462 -16.29674 -16.27125 -15.76266 -15.49538 -15.21819 -14.94016 -14.62201 -14.52984 -14.42531 -13.93499 -13.86868 -13.80890 -13.55147 -13.30819 -13.03317 -13.00737 -12.65976 -12.55244 -12.37518 -12.21989 -11.83319 -11.74224 -11.59395 -11.47483 -10.87837 -10.48266 -10.10106 -9.86026 -9.81729 -9.22646 -8.37412 -6.48131 -0.08163 0.70220 1.09345 1.36583 1.40146 1.40707 1.48686 1.59934 1.66728 1.93465 2.18832 2.28563 2.29414 2.93889 2.95470 3.30809 3.65474 3.85507 4.07550 4.09689 4.19445 4.28842 4.39839 4.48957 4.60186 4.60505 4.61513 4.69232 4.75208 4.83012 4.84049 4.88379 4.96552 5.12730 5.23781 5.30267 5.58942 5.74189 5.86945 5.97821 6.24845 6.35193 6.38441 6.57707 6.62972 6.91535 6.94459 7.14784 8.79634 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.024453 B = 0.002227 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.780809 B =12570.333299 C =12875.604135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.607 5.607 3 C 0.098 3.902 4 C 0.090 3.910 5 N -0.580 5.580 6 C 0.532 3.468 7 O -0.521 6.521 8 C 0.517 3.483 9 O -0.496 6.496 10 N -0.596 5.596 11 C 0.257 3.743 12 C -0.286 4.286 13 C 0.064 3.936 14 N -0.339 5.339 15 C 0.238 3.762 16 C -0.548 4.548 17 H 0.026 0.974 18 C 0.013 3.987 19 N -0.943 5.943 20 Si 0.956 3.044 21 H -0.266 1.266 22 H -0.227 1.227 23 H -0.279 1.279 24 N -0.341 5.341 25 C 0.064 3.936 26 C 0.505 3.495 27 O -0.584 6.584 28 H 0.068 0.932 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.133 0.867 33 H 0.115 0.885 34 H 0.124 0.876 35 H 0.429 0.571 36 H 0.179 0.821 37 H 0.215 0.785 38 H 0.087 0.913 39 H 0.047 0.953 40 H 0.272 0.728 41 H 0.158 0.842 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.003 5.637 23.961 29.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.339 5.339 3 C -0.024 4.024 4 C -0.030 4.030 5 N -0.315 5.315 6 C 0.314 3.686 7 O -0.397 6.397 8 C 0.299 3.701 9 O -0.371 6.371 10 N -0.245 5.245 11 C 0.003 3.997 12 C -0.317 4.317 13 C -0.083 4.083 14 N -0.122 5.122 15 C 0.118 3.882 16 C -0.586 4.586 17 H 0.044 0.956 18 C -0.186 4.186 19 N -0.581 5.581 20 Si 0.777 3.223 21 H -0.191 1.191 22 H -0.149 1.149 23 H -0.205 1.205 24 N -0.172 5.172 25 C -0.060 4.060 26 C 0.293 3.707 27 O -0.465 6.465 28 H 0.087 0.913 29 H 0.109 0.891 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.151 0.849 33 H 0.133 0.867 34 H 0.142 0.858 35 H 0.267 0.733 36 H 0.196 0.804 37 H 0.232 0.768 38 H 0.105 0.895 39 H 0.064 0.936 40 H 0.081 0.919 41 H 0.174 0.826 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -15.406 5.688 23.139 28.374 hybrid contribution 0.183 -0.095 -0.485 0.527 sum -15.223 5.594 22.654 27.861 Atomic orbital electron populations 1.21935 0.78376 1.03963 1.03424 1.47322 1.08676 1.06148 1.71742 1.22101 0.92600 0.84078 1.03631 1.22588 0.92223 0.89510 0.98697 1.48009 1.26449 1.10528 1.46542 1.19284 0.81673 0.87595 0.80050 1.90813 1.60344 1.26654 1.61912 1.20366 0.79943 0.90095 0.79729 1.90431 1.57980 1.26465 1.62215 1.42111 1.32833 1.09281 1.40293 1.19343 0.95794 0.88709 0.95864 1.21807 1.09152 0.89677 1.11042 1.23333 0.91041 0.99911 0.94062 1.48587 1.27930 1.02486 1.33157 1.19952 0.85999 0.97020 0.85220 1.21241 1.16301 1.23848 0.97216 0.95582 1.25945 1.00266 0.98372 0.93994 1.70052 1.39987 1.43470 1.04641 0.85611 0.78379 0.79304 0.79033 1.19121 1.14925 1.20485 1.77379 1.20215 1.01628 1.17985 1.23082 0.87500 0.86210 1.09187 1.20581 0.91048 0.83357 0.75690 1.90739 1.66132 1.37242 1.52353 0.91343 0.89081 0.90904 0.91053 0.84942 0.86709 0.85830 0.73295 0.80426 0.76832 0.89530 0.93565 0.91899 0.82607 0.85191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.70 10.43 127.77 1.33 2.04 16 2 N -0.61 -8.21 3.20 -850.39 -2.72 -10.93 16 3 C 0.10 0.66 6.60 86.69 0.57 1.23 16 4 C 0.09 0.73 6.56 86.39 0.57 1.29 16 5 N -0.58 -9.19 2.97 -824.08 -2.45 -11.64 16 6 C 0.53 11.49 7.78 87.23 0.68 12.17 16 7 O -0.52 -12.69 15.97 -3.28 -0.05 -12.75 16 8 C 0.52 13.69 7.77 87.23 0.68 14.37 16 9 O -0.50 -13.77 10.21 -3.38 -0.03 -13.81 16 10 N -0.60 -18.44 5.43 -308.89 -1.68 -20.12 16 11 C 0.26 9.82 8.10 133.40 1.08 10.91 16 12 C -0.29 -9.95 9.60 22.12 0.21 -9.73 16 13 C 0.06 2.22 11.43 83.51 0.95 3.17 16 14 N -0.34 -14.68 3.67 -351.84 -1.29 -15.97 16 15 C 0.24 10.70 5.33 85.63 0.46 11.15 16 16 C -0.55 -31.30 9.79 25.60 0.25 -31.05 16 17 H 0.03 1.74 8.06 -2.91 -0.02 1.72 16 18 C 0.01 0.73 5.47 84.65 0.46 1.20 16 19 N -0.94 -58.05 13.96 21.45 0.30 -57.75 16 20 Si 0.96 40.24 27.47 68.60 1.88 42.12 16 21 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 22 H -0.23 -8.11 6.53 99.48 0.65 -7.46 16 23 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 24 N -0.34 -15.55 12.42 -54.53 -0.68 -16.22 16 25 C 0.06 1.13 6.13 85.45 0.52 1.65 16 26 C 0.51 10.21 7.58 87.79 0.67 10.88 16 27 O -0.58 -16.70 15.97 -3.05 -0.05 -16.75 16 28 H 0.07 1.13 6.59 -2.39 -0.02 1.12 16 29 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 31 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 32 H 0.13 -0.06 8.07 -2.39 -0.02 -0.08 16 33 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.12 0.97 7.06 -2.39 -0.02 0.95 16 35 H 0.43 12.37 8.31 -92.71 -0.77 11.59 16 36 H 0.18 5.60 5.91 -2.92 -0.02 5.59 16 37 H 0.22 5.22 8.06 -2.91 -0.02 5.19 16 38 H 0.09 3.34 7.12 -2.39 -0.02 3.33 16 39 H 0.05 2.01 7.57 -2.39 -0.02 1.99 16 40 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 41 H 0.16 3.55 4.35 -49.31 -0.21 3.34 16 42 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -81.78 354.73 1.73 -80.05 By element: Atomic # 1 Polarization: 24.43 SS G_CDS: 0.06 Total: 24.49 kcal Atomic # 6 Polarization: 20.83 SS G_CDS: 8.44 Total: 29.27 kcal Atomic # 7 Polarization: -124.11 SS G_CDS: -8.52 Total: -132.63 kcal Atomic # 8 Polarization: -43.17 SS G_CDS: -0.14 Total: -43.30 kcal Atomic # 14 Polarization: 40.24 SS G_CDS: 1.88 Total: 42.12 kcal Total: -81.78 1.73 -80.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531499669.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.503 kcal (2) G-P(sol) polarization free energy of solvation -81.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds